BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57100.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938682 jgi|Araly1|938682|scaffold_502873.1 1399 0.0
Ahg947448 jgi|Araly1|947448|scaffold_703677.1 381 8e-105
> Ahg938682 jgi|Araly1|938682|scaffold_502873.1
Length=1117
Score = 1399 bits (757), Expect = 0.0
Identities = 1000/1115 (90%), Gaps = 26/1115 (2%)
Strand=Plus/Plus
Query 122 TTCTTTTTACTCTGCAAAAAACGACGATGAAATTTTGCAATCCTTTCTTGAGACTCATTC 181
||| |||| || ||| ||||| || ||| || |||||||||||||||||||||||||||
Sbjct 4 TTC-TTTTGCTTTGC-AAAAA-GATGAT--AA-TTTGCAATCCTTTCTTGAGACTCATTC 57
Query 182 TCAGGCGTAAACCGATCTCCATGATTTCTCCAACAATGTTTCTCCTATCGTCACCTACCA 241
||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct 58 TCAAGCGTAAACCGATCTCCATGGTTTCTCCAACAATGTTTCTCCTATCGCCACCTAGCA 117
Query 242 CTTCGTCTTCCATCGGCCACAGTAATGGGATGCTGCGATCACGATCAGAAGATAATCTTA 301
||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| |
Sbjct 118 CTTCGTCGTCCATCGGCCACACTAATGGGATGCTGCGATCGCGATCAGAAGATAATCTAA 177
Query 302 ACAAACTTGGCGAGTGTATGGATAATATGGACGAAGACGTCTCTAAACTCTTCATCGAGT 361
| ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 178 AGAAACTTGGCGACTGCATGGAGAATATGGATGAAGACGTCTCTAAACTCTTCATCGA-A 236
Query 362 TTC-AACAAACTGATCTCCGTGAAGATCCCGACTTGTTCCGTCTTCTCAACCATTACTTC 420
||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 237 TTCGAGCAAACTGATCTCCGCGAAGATCCCGACTTGTTCCGTCTTCTCAACCACTACTTC 296
Query 421 ACCACTAGCAAAGGTGTTTCCCAGCTCTGCGAGTCTCTTAGAACTTGCTTAGAGAGATCC 480
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||
Sbjct 297 ACCACTAGCAAAGGTGTTTCCCAGCTCTGCGAGTCTCTTAGAACATGCTTGGAGAGAGCC 356
Query 481 GAGAACAACGAGTGTCTCTTACTTGATGAAGCACTAGT-TGATTTTGAGTTGGAAAAATT 539
||||||||||||||||||||| |||||||||||||| | |||||||||| ||||||||
Sbjct 357 GAGAACAACGAGTGTCTCTTAATTGATGAAGCACTA-TCTGATTTTGAGCAAGAAAAATT 415
Query 540 AGGTTATGGTGGG-T-C-ACTCGAAGAAGCTAGTTTCAGAAAAACCTACCGAGATCTGAG 596
|||||||| ||| | | |||||| ||||||| ||||||||||||| ||||||||||||
Sbjct 416 GGGTTATGGCGGGTTACTTCTCGAACAAGCTAGCTTCAGAAAAACCTTCCGAGATCTGAG 475
Query 597 GAACTTCAACGCCTTTTACAACAACAATTCCGGTGAAGAAGACGACTTGGATTATTGCGA 656
||||||||| ||||||| | ||||| ||| || ||||||||||||||||||||
Sbjct 476 GAACTTCAATGCCTTTT---ATAACAA------TGACGACGACGACTTGGATTATTGCGA 526
Query 657 GTTTCTCAGAAAGTTTCAGACTTGTCATGAAGAGTTGGCGAAGATGGTCGTTAAACTGGA 716
||||||||||| |||||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct 527 ATTTCTCAGAAAATTTCAGACCTGTCATGAAGAGCTGGCGAAGATGATCGTTAAACTGGA 586
Query 717 GAAGACGATGAAAGATATCGACAAAAAGCTGAGACGTGTTCGAGGACGAAGAGCGATTGT 776
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 587 GAAGACTATGAAAGAAATCGACAAAAAGCTGAGACGTGTTCGAGGACGAAGAGCAATTGT 646
Query 777 CACGGCAGCTTTACTAGCTCCGGTAATTGCTGTAATCTTCTTGAGTAAACTCGTTGCCGG 836
|| ||||||||||| ||||| |||||||||| ||||||| |||| |||||| |||||||
Sbjct 647 TACCGCAGCTTTACTTGCTCCAGTAATTGCTGCAATCTTCCTGAGCAAACTCATTGCCGG 706
Query 837 ATTAGTTCCTATAGAGGGATTGAGTACCTTCGTAGCTTCAAGATGGAGAAAATCAACGGA 896
|||||||||||| |||||||||| ||| || ||||||||||| ||||||||||| || ||
Sbjct 707 ATTAGTTCCTATGGAGGGATTGACTACATTTGTAGCTTCAAGGTGGAGAAAATCGACCGA 766
Query 897 ATCTTTGAAAAGGGAGAAGACGGCCATGAGTTCAATGGAAAGAGGAATTATCG-TGGCTC 955
||| |||||| |||||||||||||||||||||| ||||||||||||| | || | ||||
Sbjct 767 ATCATTGAAACGGGAGAAGACGGCCATGAGTTCTATGGAAAGAGGAACGA-CGGTTGCTC 825
Query 956 TCAAGCAAGTGGAGAAAATTAGTAAACTCGTGAGTCGATTGGAGT-CTGTGGAGAGGTCA 1014
|||| ||||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 826 TCAAACAAGTTGAGAAAATTAGTAAACTCGTGAGTCGATTGGA-TACTGTGGAGAGGTCG 884
Query 1015 ATTAGTTTGACGGCGGAGTTTGCTGTTAAGAAAAGGTCTTCGGTGGTTGTAGCTATGAGA 1074
||| || |||| ||||||||||| ||||| ||||||||| || || | |||||||| ||
Sbjct 885 ATTCGTGTGACTGCGGAGTTTGCCGTTAATAAAAGGTCTCCGTTGACTATAGCTATGGGA 944
Query 1075 GAGGTGGAAGAGGAACGGAAGAGGTTGAAGTCAACTCTCGTTGACCTAGACAGAGAGACT 1134
|| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 945 GATGTGGAGGAGGAACGAAAGAGGTTGAAGTCAACTCTCGTTGACTTAGACAGAGAGACC 1004
Query 1135 GGACTTTGCAATGGTTTTGCTCAGTTTGGTCGTACGGTGGCTCTGGAGAAGATTACTGAG 1194
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1005 GGACTTTGCAATGGTTTTGCTCAGTTTGGGCGTACGGTGGCTTTGGAGAAGATTACTGAG 1064
Query 1195 TTTCTTTCTCGTGGCGACAAGAGCTCCAAATAGTT 1229
||||||||||||||| |||||||||| ||||||||
Sbjct 1065 TTTCTTTCTCGTGGCAACAAGAGCTCGAAATAGTT 1099
> Ahg947448 jgi|Araly1|947448|scaffold_703677.1
Length=358
Score = 381 bits (206), Expect = 8e-105
Identities = 281/317 (89%), Gaps = 6/317 (2%)
Strand=Plus/Plus
Query 921 CATGAGTTCAATGGAAAGAGGAATTATCGTGGCTCTCAAGCAAGTGGAGAAAATTAGTAA 980
|||||||||||||||||||| || |||||||||||||| ||| ||||||||| ||||||
Sbjct 32 CATGAGTTCAATGGAAAGAGAAACGATCGTGGCTCTCAAACAAATGGAGAAAAATAGTAA 91
Query 981 ACTCGTGAGTCGATTGGAGTCTGTGGAGAGG-TCAATTAGTTTGACGGCGGAGTTTGCTG 1039
|||||||||||||||||| |||| ||| || || ||| ||||||| ||| ||||||| |
Sbjct 92 CCTCGTGAGTCGATTGGAGACTGTTGAG-GGATCGATTTGTTTGACTGCGAAGTTTGCCG 150
Query 1040 TTAAGAAAAGGTCTTCGGTGGTTGTAGCTATGAG-AGAGGTGGAAGAGGAACGGAAGAGG 1098
||||||||||||||| |||| ||||||||||| | ||| |||| |||||||||||||||
Sbjct 151 TTAAGAAAAGGTCTTGGGTGATTGTAGCTATG-GTAGAAATGGAGGAGGAACGGAAGAGG 209
Query 1099 TTGAAGTCAACTCTCGTTGACCTAGACAGAGAGA-CTGGACTTTGCAATGGTTTTGCTCA 1157
||||||||||||||||||||||| |||||||||| | ||| | ||| || ||| ||||
Sbjct 210 TTGAAGTCAACTCTCGTTGACCTCGACAGAGAGACCGGGA-TGTGCCATTGTTGTGCTTT 268
Query 1158 GTTTGGTCGTACGGTGGCTCTGGAGAAGATTACTGAGTTTCTTTCTCGTGGCGACAAGAG 1217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 GTTTGGTCGTACGGTGGCTCTGGAGAAGATTACTGAGTTTCTTTCTCGTGGCGACAAGAA 328
Query 1218 CTCCAAATAGTTGTTTT 1234
||| ||||||||| |||
Sbjct 329 CTCGAAATAGTTGATTT 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5