BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57120.1
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486155 jgi|Araly1|486155|fgenesh2_kg.5__2147__AT3G57120.1 2204 0.0
> Ahg486155 jgi|Araly1|486155|fgenesh2_kg.5__2147__AT3G57120.1
Length=1496
Score = 2204 bits (1193), Expect = 0.0
Identities = 1416/1520 (93%), Gaps = 30/1520 (2%)
Strand=Plus/Plus
Query 66 ACAAAAGAAGAGTAGACTTCCCATCATCCTCCGCTATAATGCGCC-ACTCTCCGCGTTAT 124
||||||||||||||||||| |||||| ||||||||||||||| | |||||||||| |
Sbjct 1 ACAAAAGAAGAGTAGACTTTCCATCA----CCGCTATAATGCGCCGA-TCTCCGCGTTCT 55
Query 125 CTATAATACGCTAGTATTCCGTGCCCGCTATAATGCGCAAGTCTCCGTCTCAGCCTCTCT 184
|||||| |||| |||| ||||||||||||||||||||| |||||||| || ||||||||
Sbjct 56 CTATAAGACGCCAGTA-TCCGTGCCCGCTATAATGCGCTGGTCTCCGTGTCCGCCTCTCT 114
Query 185 TCGCCGTCTGATGTCTGATCTTCTAGGTCACCTCCACAAATTCGAACAAGAATTTGTCTT 244
|||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 115 CCGCCGTCTAATGTCTGATCTTCTAGGTCTCCTCCACAGATTCGAACAAGAATTTGTCTT 174
Query 245 TATGTGCAAAACCAAAATGGGAGTCAATGCTTCAGAGCCAAAACGAACACGATCGCGACC 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 AATGTGCAAAACCAAAATGGGAGTCAATGCTTCAGAGCCAAAACGAACACGATCGCGACC 234
Query 305 AAGTCAATCGCAGGGGAGGCATCCGTCGACGAGACGATCTCCGTCAACGAGCAACACCGG 364
||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 235 GAGTCAATCGCAAGAGAGGCATCCGTCGACGAGACGATCTCCGTCAACGAGCACCACCGG 294
Query 365 CACAACAACAACCACGACGACATCGAATTCTAACAAAACTGGTGCCTCCTCTTCCTCCTC 424
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 295 --C-ACAACAACCACGACGACATCGAATTCTAACAAAACTGGTGCCTCCTCCTCCTCCTC 351
Query 425 CGGTGCGGCTTCTTCCTCAGTCGCTAGTCGAACATCTCTCGCTAGTCTCCGAGAATCCTT 484
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AGGT---GCTTCTTCTTCAGTCGCTAGTCGAACATCTCTCGCTAGTCTCCGAGAATCCTT 408
Query 485 ACCGGAAAATCCTCACATATACAACGTCTCCGAGATTCGTGCCGCTACCAACAATTTCCT 544
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 409 ACCGGAGAACCCTCACATATACAACGTCTCCGAGATTCGTGCCGCCACCAACAATTTCCT 468
Query 545 CGCTAATCGCTTATCTTCCTCTTCCTCTAAAGCCTCCTGGCGTTGCAATTTAAGAGGGAA 604
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 469 CGCTAATCGCTTATCTTCCTCTTCCTCTAAAGCCTCGTGGCGTTGCAATTTGAGAGGGAA 528
Query 605 AGAAGTCGTTGTGTTTCAGAGAAAGTTTAGGCGAAGGATCGACACGGATGAGCTTAGAGA 664
|||||||||||| ||||||||||||||||| ||||| |||| || |||||||||||||||
Sbjct 529 AGAAGTCGTTGTCTTTCAGAGAAAGTTTAGACGAAGAATCGCCATGGATGAGCTTAGAGA 588
Query 665 TCGTCTTTCAGATATTTGCCGGAGCCACCACGGAAGCATCATTAATCTACTCGGCGCTTC 724
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 589 TCGTCTTTCAGATATTTGCCGGAGCCACCACGGAAGCATCACAAATCTACTCGGCGCTTC 648
Query 725 TGTTTCCGGCGGTGGAAGAGTaggaggaggaggaggaggaggaggTGATCACATCTACTT 784
||||||||||||| | | | | ||||||||||||||||||| |||||||||||| |
Sbjct 649 TGTTTCCGGCGGT----G-G-A--A-GAGGAGGAGGAGGAGGAGGCGATCACATCTACCT 699
Query 785 GGTCTACGAATACGTCAACGGAGCATCTCTAGCTGATTGCTTGAGAAACCCTAAGAACCC 844
||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 700 AGTCTACGCATACGTCAACGGAGCATCTCTCGCTGAGTGCTTGAGAAACCCTAAGAACCC 759
Query 845 TAAATTT-ACAGTTCTATCGAATTGGACTTCACGGATTCAAATTGCAACAGATCTAGCTC 903
| ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 760 T-AATTTCACAGTTTTATCGAATTGGACATCACGGATTCAAATTGCAACAGATCTAGCTC 818
Query 904 ATGGACTCGATTACATCCACAACAAAACCGGATTAAAGATCGAAAACCTAGTTCACAATC 963
||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||
Sbjct 819 ATGGACTCGATTACATCCACAACAAGACTGGATTAAAGATCGAAAATCTCGTTCACAATC 878
Query 964 ACATCAAGAGCTCGGCGGTGATCGTGACGGAGCCAGATTTCAACGCTAAGATCTGTCACT 1023
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 879 ACATCAAGAGCTCGGCGGTGATCGTGACGGAGCCTGATTTCAACGCTAAGATCTGTCACT 938
Query 1024 TCGGAACTGCGCAGCTTTGCGGCGAAACAGATGAAATGTCACTGGAGAGAGACGAATCGA 1083
|||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 939 TCGGAACTGCGCAGCTTTGCGGTGAAACAGATGAAATGTCACCGGAGATAGACGAATCGA 998
Query 1084 GAAATTCAAGGCGATCTGATAGCAGAGCGATCAGATTCGAAGGAGTTAGAGGTTACATGT 1143
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 GAAATTCCCGGCGATCTGATAGCAGAGCGATCAGATTCGAAGGAGTTAGAGGTTACATGT 1058
Query 1144 CGCCGGAATTTCAAA-ATTTGGGAATCGCTACTCAGAAATCGGATGTTTACGCTTTCGGA 1202
|||||||||||||| || ||||||||| ||||||||||| || |||||||||||||||
Sbjct 1059 CGCCGGAATTTCAATCATC-GGGAATCGCGACTCAGAAATCAGACGTTTACGCTTTCGGA 1117
Query 1203 GTTATGATGTTGGAGCTTCTCTCAGGCGAGGAGCCGTTGAAGTACAGGTATGATAAAGCC 1262
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1118 GTTATGATGTTGGAGCTTCTCTCAGGCGAGGAGCCGTTGAAGTACAGATATGATAAATCC 1177
Query 1263 ACAGGAGATTTCGAGCGGACGTCGGTGATTGAAACGGCGAGAGCGGCGATCGAAG-ATGG 1321
|| |||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||
Sbjct 1178 ACCGGAGATTTCGAGCGGACGTCGGTGATTGAAACGGCGGGAGCGGCGATCGA-GTACGG 1236
Query 1322 AGATGGTGATAGAGATGGAAGACTGAGGAGGTGGATGGATCGGAGATT-GGAGGATTCGT 1380
||||||||||| ||| |||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 1237 AGATGGTGATAAAGAGGGAAGATTGAGGAGGTGGATGGATCGGAGATTAGG-GGATTCGT 1295
Query 1381 TTCCTGTGACGGTGGTGGAGAAGTTAACGAGGCTAGCGTTGGATTGTGTTCAGGATGATC 1440
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1296 TTCCTGTGACGGTGGTGGAGAAATTAACGAGGCTGGCGTTGGATTGCGTTCAGGATGATC 1355
Query 1441 CAGTGAATAGGCCGGAGATGGGAAGAGTCGCCGGAAAAATATCACAACTGTATTTAGAAT 1500
| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||
Sbjct 1356 CGGTGAATAGGCCGGAGATGGGAAGAGTCGCCGGGAAAATATCTCAATTGTATTTGGAAT 1415
Query 1501 CGGAAAAATGGTCGGCGAATATGAAACGGCCAACGGATATCACCGTCTCTTTCGCTCCCA 1560
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1416 CGGAAAAATGGTCGGCGAATATGAAACGGCCAACGGATATCACCGTCTCCTTCGCTCCCA 1475
Query 1561 GATGAGGGAATCTTCTTATT 1580
||||||||||| ||| ||||
Sbjct 1476 GATGAGGGAATATTCCTATT 1495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63991611600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5