BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57130.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324222 jgi|Araly1|324222|fgenesh1_pm.C_scaffold_5001766 2241 0.0
Ahg934964 jgi|Araly1|934964|scaffold_402952.1 822 0.0
> Ahg324222 jgi|Araly1|324222|fgenesh1_pm.C_scaffold_5001766
Length=1407
Score = 2241 bits (1213), Expect = 0.0
Identities = 1343/1407 (95%), Gaps = 3/1407 (0%)
Strand=Plus/Plus
Query 1 ATGAGCAATACTTTCGAAGAATCACTCAAATCTATGTCATTGGATTACCTAAACCTCTTA 60
||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGCAGTACTTTCGAAGAATCCCTCAAATCTATGTCGTTGGATTACCTAAACCTCTTA 60
Query 61 ATCAACGGTCAAGCTTTCTCCGATGTCACTTTCAGCGTCGAAGGCCGTCTAGTCCACGCT 120
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 61 ATCAACGGTCAAGCTTTCTCTGATGTCACTTTCAGCGTCGAAGGCCGTTTAGTCCACGCT 120
Query 121 CACCGTTGCATCCTCGCTGCTCGTAGCCTCTTCTTCCGCAAATTCTTCTGTGAATCTGAT 180
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 121 CACCGTTGCATCCTCGCCGCTCGTAGCCTCTTCTTCCGCAAGTTCTTCTGCGAATCTGAT 180
Query 181 CCTTCGCAACCCGGAGCTGAACCCGCTAACCAAACCGGATCAGGAGCCAGAGCAGCCGCA 240
||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 181 CCTTCGCAAAGCGGAGCTGAACAGGCTAACCAAACCGGATCAGGAGCCAGAGCAGCTGCA 240
Query 241 GTAGGAGGAGTCATACCGGTTAACTCAGTCGGTTACGAAGTTTTCTTACTTCTACTTCAA 300
|| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GTGGGAGGAGTGATACCGGTTAACTCGGTCGGTTACGAAGTTTTCTTACTTCTACTTCAG 300
Query 301 TTCTTGTACAGTGGTCAAGTCTCAATTGTACCACATAAGCACGAGCCAAGATCGAATTGT 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCTTATACAGTGGTCAAGTCTCAATTGTACCACATAAGCACGAGCCAAGATCGAATTGT 360
Query 361 GGAGATAGAGGATGCTGGCACACGCATTGCACTGCAGCCGTCGATCTCTCTTTAGATATT 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAGATAGGGGATGCTGGCACACGCATTGCACTGCAGCCGTCGATCTCTCTTTAGATATC 420
Query 421 TTAGCCGCCGCTCGCTACTTTGGCGTCGAGCAGCTCGCGTTGCTTACTCAGAAACATTTG 480
|||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 421 TTAGCCGCCGCTCGATATTTTGGCGTCGAGCAGCTCGCGTTACTTACGCAGAAACATTTG 480
Query 481 ACAAGTATGGTGGAGAAAGCCTCCATTGAAGATGTGATGAAAGTGCTCATAGCTTCAAGA 540
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 481 ACAAGTATGGTGGAGAAAGCCTCCGTTGAAGATGTGATGAAAGTGCTGATAGCTTCAAGA 540
Query 541 AAGCAAGACATGCATCAATTATGGACTACTTGCTCTTACTTAATCGCCAAATCCGGTCTT 600
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 541 AAGCAAGACATGCATCAATTATGGACCACTTGCTCTTACCTAATCGCCAAATCCGGTCTT 600
Query 601 CCACAAGAGATTCTAGCCAAACATCTCCCAATCGAACTTGTAGCCAAGATTGAGGAGCTC 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 CCACAAGAGATTCTAGCCAAACATCTCCCAATCGAACTTGTAGCCAAGGTTGAGGAGCTC 660
Query 661 CGTCTCAAATCTTCAATGCCTCTCCGTTCACTAATGCCTCACCACCATGACCTAACCTCG 720
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 661 CGTCTCAAATCTTCAATGCCTCTTCGTTCCCTAATGCCTCACCACCATGACCTAACCTCG 720
Query 721 ACTTTAGACCTCGAAGACCAGAAGATCAGGAGGATGAGACGTGCATTGGACTCCTCTGAT 780
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 721 TCTTTAGACCTCGAGGACCAGAAGATCAGGAGGATGAGACGTGCATTGGATTCCTCCGAT 780
Query 781 GTCGAGCTTGTGAAGCTAATGGTGATGGGAGAAGGACTCAATCTAGATGAGTCCCTAGCT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTCGAGCTTGTGAAGCTAATGGTGATGGGAGAAGGACTCAATCTAGATGAGTCCCTAGCT 840
Query 841 TTGATTTACGCGGTTGAAAATTGTAGTAGAGAGGTTGTAAAGGCACTTCTTGAGCTTGGA 900
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 TTGATTTACGCCGTTGAGAATTGTAGTAGAGAGGTTGTGAAGGCACTTCTTGAGCTTGGA 900
Query 901 GCAGCTGATGTGAACTATCCCGCGGGTCCCACAGGGAAAACCGCTCTTCACATTGCGGCT 960
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 901 GCAGCCGATGTGAACTATCCCGCCGGTCCCACAGGGAAAACCGCTCTTCACATCGCGGCT 960
Query 961 GAAATGGTGTCTCCGGACATGGTGGCTGTTTTACTCGACCACCACGCCGACCCTAACGTC 1020
|||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 961 GAAATGGTCTCTCCGGACATGGTGGCTGTCTTACTTGACCACCACGCTGACCCAAACGTG 1020
Query 1021 CAGACAGTGGATGGAATCACTCCTCTCGACATCCTTCGAACCCTAACGTCAGATTTTTTG 1080
||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1021 CAGACTGTGGATGGAATCACTCCTCTCGACATCCTTAGAACCCTAACGTCGGATTTTTTG 1080
Query 1081 TTCAAGGGGGCAATTCCTGGATTGACTCACATTGAGCCCAATAAGCTTAGGCTTTGTCTC 1140
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1081 TTCAAGGGGGCGATTCCTGGATTGACTCATATTGAGCCCAATAAGCTCAGGCTTTGTCTC 1140
Query 1141 GAGCTGGTCCAGTCCGCGGCATTGGTTATATCACGCGAAGAAGGAAACAATAACAGTAAC 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1141 GAGCTGGTCCAGTCCGCGGCATTGGTTATATCACGCGAAGAAGGAAACAATACCAGTAAC 1200
Query 1201 GATAACAACACAATGATCTACCCTAGGATGAAAGACGAACACACGAGCGGAAGTAGTTTG 1260
|| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1201 GACAACAACGCAATGATCTACCCTAGAATGAAAGACGAACACACGAGCGGAAGTAGTTTG 1260
Query 1261 GATTCAAGATTGGTTTATCTGAATCTTGGTGCTACAAATCGTGATATTGGAGATGACAAT 1320
||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |||
Sbjct 1261 GATTCAAGATTGGTTTATCTGAATCTTGGTGCTACAAATCGGGATCTTGGGGATGAAAAT 1320
Query 1321 AGCAATCAAAGGGAAGGAATGAATCTGcatcatcatcatcatgacccatcaacgatgtat 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGCAATCAAAGGGAAGGAATGAATCTGCATCATCATCATCATGACCCATCAACGATGTAT 1380
Query 1381 catca-c-c-accaccaccatTTCTAG 1404
||||| | | |||||||||||||||||
Sbjct 1381 CATCATCACCACCACCACCATTTCTAG 1407
> Ahg934964 jgi|Araly1|934964|scaffold_402952.1
Length=1517
Score = 822 bits (445), Expect = 0.0
Identities = 797/965 (83%), Gaps = 32/965 (3%)
Strand=Plus/Plus
Query 247 GGAGTCATACCGGTTAACTCAGTCGGTTACGAAGT-TTTCTTACTT-CTACTTCA-ATTC 303
||||| ||||| || |||||||||||||| || || |||| | || |||||||| |||
Sbjct 282 GGAGTTATACCAGTGAACTCAGTCGGTTATGAGGTGTTTC-T-GTTGCTACTTCAGTTTC 339
Query 304 TTGTACAGTGGTCAAGTCTCAATTGTACCACATAAGCACGAGCCAAGATCGAATTGTGGA 363
|| || || || |||||||| || || || || || |||||||| ||| | ||||||||
Sbjct 340 TT-TATAGCGGACAAGTCTCCATCGTGCCGCAGAAACACGAGCCTAGACCTAATTGTGGC 398
Query 364 GATAGAGGATGCTGGCACACGCATTGCACTGCAGCCGTCGATC-T-CTCTTTAGATATTT 421
|| |||||||| |||||||| |||||| | || ||||| |||| | ||| || |||| |
Sbjct 399 GAGAGAGGATGTTGGCACACTCATTGCTCAGCCGCCGTTGATCTTGCTC-TT-GATACTC 456
Query 422 TAGCCGCCGCTCGCTACTTTGGCGTCGAGCAGCTCGCGTTGCTTACTCAGAAACATTTGA 481
| |||||| |||| ||||| ||||||||||||||||| ||||| ||||||||||| |||
Sbjct 457 TCGCCGCCTCTCGTTACTTCGGCGTCGAGCAGCTCGCATTGCTCACTCAGAAACAATTGG 516
Query 482 CAAGTATGGTGGAGAAAGCCTCCATTGAAGATGTGATGAAAGTGCTCATAGCTTCAAGAA 541
|||| ||||||||||||||||| |||||||||||||||||||| | ||||| |||||||
Sbjct 517 CAAGCATGGTGGAGAAAGCCTCTATTGAAGATGTGATGAAAGTTTTAATAGCATCAAGAA 576
Query 542 AGCAAGACATGCATCAATTATGGACTACTTGCTCTTACTTAATCGCCAAATCCGGTCTTC 601
||||||||||||||||||||||||| ||||||||| ||||| | || ||||| ||||| |
Sbjct 577 AGCAAGACATGCATCAATTATGGACCACTTGCTCTCACTTAGTTGCTAAATCAGGTCTCC 636
Query 602 CACAAGAGATTCTAGCCAAACATCTCCCAATCGAACTTGTAGCCAAGATTGAGGAGCTCC 661
||| |||||||||||||||||||||||| ||||| |||| ||||| || || ||||| |
Sbjct 637 CACCAGAGATTCTAGCCAAACATCTCCCTATCGATGTTGTCGCCAAAATAGAAGAGCTTC 696
Query 662 GTCTCAAATCTTCAAT-GCCTCTCCGTTCACTAATGCCTCACCACCATGACC-TAACCTC 719
|||| |||||||| || || || |||||| |||||||||||| |||| ||| | | |||
Sbjct 697 GTCTGAAATCTTCTATAGC-TCGCCGTTCTCTAATGCCTCACAACCACCACCATGATCTC 755
Query 720 -GACTT---T-A-GACCTCGAAGACCAGAAGATCAGGAGGATGAGACGTGCATTGGACTC 773
| | | | | ||||| ||||| || ||||| || |||||| |||| || ||||| ||
Sbjct 756 AG-CGTGGCTCAAGACCTAGAAGATCAAAAGATTAGAAGGATGCGACGAGCTTTGGATTC 814
Query 774 CTCTGATGTCGAGCTTGTGAAGCTAATGGTGATGGGAGAAGGACTCAATCTAGATGAGTC 833
|| || || ||||| |||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 815 ATCAGACGTGGAGCTAGTGAAGCTGATGGTTATGGGAGAAGGACTCAATCTTGATGAGTC 874
Query 834 CCTAGCTTTG-ATTTACGCGGTTGAAAATTGTAGTAGAGAGGTTGTAAAGGCACTT-CTT 891
|||| ||| ||| |||| ||||||| |||||||||||| ||||| ||||| || |||
Sbjct 875 ATTAGCATTGCATT-ACGCTGTTGAAAGTTGTAGTAGAGAAGTTGTCAAGGCT-TTGCTT 932
Query 892 GAGCTTGGAGCAGCTGATGTGAACTATCCCGCGGGTCCCA-CAGGGAAAACCGCTC-TT- 948
|| |||||||| || || ||||| ||||| |||||||| | | ||||||| | | | ||
Sbjct 933 GAACTTGGAGCTGCCGACGTGAATTATCCGGCGGGTCC-AGC-GGGAAAAACAC-CGTTG 989
Query 949 CACATTGCGGCTGAAATGGTGTCTCCGGACATGGTGGCTGTTTTACTCGACCACCACGCC 1008
|||||||||||||| ||||| ||||| ||||||||||||||| | | |||||||||||
Sbjct 990 CACATTGCGGCTGAGATGGTCTCTCCAGACATGGTGGCTGTTCTGTTAGACCACCACGCT 1049
Query 1009 GACCCTAACGTCCAGACAGT-GGATGGAATCACTCCTCTCGACATCCTTCGAACCCTAAC 1067
|| ||||| || | |||||| || ||||||||||||||| || |||||| |||| ||||
Sbjct 1050 GATCCTAATGTACGGACAGTTGG-TGGAATCACTCCTCTTGATATCCTTAGAACATTAAC 1108
Query 1068 GTCAGATTTTTTGTTCAAGGGGGCAATTCCTGGATTGACTCACATTGAGCCCAATAAGCT 1127
|| ||||| ||||||||||||||| |||||||||||||||||||||| || || |||||
Sbjct 1109 TTCGGATTTCTTGTTCAAGGGGGCAGTTCCTGGATTGACTCACATTGAACCGAACAAGCT 1168
Query 1128 TAGGCTTTGTCTCGAGCTGGTCCAGTCCGCGGCATTGGTTATATCACGCGAAGAAGGAAA 1187
||||||||| |||||||| || || || || ||| |||| ||||| || |||||||||||
Sbjct 1169 TAGGCTTTGCCTCGAGCTTGTTCAATCAGCTGCAATGGTGATATCTCGAGAAGAAGGAAA 1228
Query 1188 CAATA 1192
|||||
Sbjct 1229 CAATA 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5