BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57140.1
Length=2837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938685 jgi|Araly1|938685|scaffold_502876.1 3818 0.0
> Ahg938685 jgi|Araly1|938685|scaffold_502876.1
Length=2432
Score = 3818 bits (2067), Expect = 0.0
Identities = 2304/2419 (95%), Gaps = 13/2419 (1%)
Strand=Plus/Plus
Query 91 CTCGTCTTCGAGTCGGAGACAATGGATATAAGCAACGAAGCAGGCGTTGATGCGTTCTCA 150
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 CTCATCTTTGAGTCGGAGACAATGGATATAAGCAACGAAGCAGGTGTTGATGCGTTCTCA 60
Query 151 ATTATAGGACCCACGACTATAATCGGAAGAACAATTGCCGTCCGGATCTTGTTCTGCAAC 210
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ATTATAGGACCCACAACTATAATCGGAAGAACAATTGCCTTCCGGATCTTGTTCTGCAAC 120
Query 211 TCCGTGTCTATATTCAGACACAAAGTTTTCAGAATTCTCAAATTTTTCCTCAGAGGAGGT 270
|||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct 121 TCCGTGTCTATATTCAGACACAAAGTCTTCAGATTTCTCATGTTTTTCCTCAGAGGAGGT 180
Query 271 AGGGTTTTACTATCACCGTTTGTGTCCTTGCTACATCCCAGGAATCCACAAGGGATATTA 330
||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 181 AGGGTTTTACTGTCACCGTTTGTGTCCTTACTACATCCCAGGAATCCCCAAGGGATATTA 240
Query 331 GTAATGGTGACGACGATGGCCTTTCTGTTGAACCGCTACACAAGCTTAAAAGCAAAGGCT 390
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 GTAATGGTGACGACGATGGCCTTTCTGTTGAATCGCTACACCAGCTTAAAAGCAAAGGCT 300
Query 391 GAGATGGCTTACAGGAGAAAATTTTGGAGGAACATGATGAGAGCTGCATTGACATATGAG 450
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 301 GAGATGGCTTACAGGAGGAAATTCTGGAGGAACATGATGAGAGCTGCATTGACATACGAG 360
Query 451 GAATGGTCTCACGCCGCAAAGATGCTAGATAAAGAGACTCCCAAGGTGAACGAGACAGAT 510
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 361 GAATGGTCTCACGCCGCAAAGATGCTCGATAAAGAGACTCCGAAGGTGAACGAGACAGAT 420
Query 511 CTTTTTGATGTGGAGCTCGTAAGTAATAAGCTTGATGAACTTAAGCATAGACGTCATGAG 570
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 421 CTTTTTGATGTGGAGCTCGTGAGTAATAAGCTTGAGGAGCTTAAGCATAGACGTCATGAG 480
Query 571 GGCTCTCTTAGAGACATTATTTTCTGTATGAGAGCTGATCTTGTGAGAAATCTCGGTAAT 630
|||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 481 GGCTCTCTGAGAGACATTATCTTCTGTATGAGAGCTGATCTTGTGAGAAATTTAGGTAAT 540
Query 631 ATGTGTAACCCTGAGCTTCACAAGGGAAGGCTTCACGTGCCGAGACTCATCAAAGAGTAT 690
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 ATGTGTAACCCTGAGCTTCACAAGGGAAGGCTTCACGTACCGAGACTCATCAAAGAGTAT 600
Query 691 ATCGATGAGGTCTCTACACAGCTTAGGATGGTTTGCGACATGGACACTGAAGAGCTTTCT 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCGATGAGGTCTCTACACAGCTTAGGATGGTTTGCGACATGGACACTGAAGAGCTTTCT 660
Query 751 CTGGAGGAGAAACTTTCTTTTATGCATGAGACCAGACACGCGTATGGAAGAACAGCTCTA 810
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 661 CTGGAGGAGAAACTCTCTTTTATGCATGAGACGAGACACGCATATGGAAGAACGGCTCTG 720
Query 811 CTTCTCAGTGGAGGAGCTTCTCTTGGGGCTTTCCATCTTGGTGTGGTCAAGACGCTTGTG 870
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 CTTCTGAGCGGAGGAGCTTCTCTAGGGGCTTTCCATCTTGGTGTGGTCAAGACGCTTGTG 780
Query 871 GAACATAAGCTATTGCCAAGAATTATAGCTGGTTCAAGCGTGGGGTCTGTAATGTGTGCG 930
||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 781 GAACATAAGCTCTTGCCGAGAATTATAGCCGGTTCAAGTGTGGGGTCTGTAATGTGTGCG 840
Query 931 GTTGTGGGGACAAGGTCATGGCCCGAGTTGCAGAGCTTCTTTGAAGGGTCCTGGCATGCT 990
||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||
Sbjct 841 GTTGTGGGGACAAGGTCATGGCCTGAGTTACAGAGCTTCTTTGAAGGCTCTTGGCATGCT 900
Query 991 CTGCAGTTCTTTGATCAGATGGGAGGAATTTTCACTACTGTGAAGCGGGTTATGACTCAA 1050
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 901 TTGCAGTTCTTTGATCAGATGGGAGGGATTTTCACTACTGTGAAACGGGTTATGACTCAA 960
Query 1051 GGCGCAGTCCATGAGATCCGGCATCTGCAATGGAAGTTGAGGAATCTCACCAACAATCTC 1110
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 961 GGCGCAGTCCATGAGATCCGGCATTTGCAATGGAAGTTGAGGAATCTCACCAACAATCTC 1020
Query 1111 ACATTCCAAGAAGCTTACGACATAACAGGACGGATTCTAGGGATAACAGTTTGTTCCCTG 1170
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACATTCCAAGAAGCTTACGATATTACAGGACGGATTCTAGGGATAACAGTTTGTTCCCTG 1080
Query 1171 AGGAAACACGAGCCGCCTAGATGTCTCAATTATCTGACTTCGCCTCATGTTGTGATATGG 1230
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 AGGAAACACGAGCCGCCTAGATGTCTCAATTACCTGACTTCGCCTCATGTTGTGATATGG 1140
Query 1231 AGTGCAGTGACTGCATCTTGTGCTTTCCCAGGTCTTTTCGAAGCTCAAGAACTCATGGCC 1290
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1141 AGTGCAGTGACTGCCTCTTGTGCTTTCCCAGGTCTGTTCGAGGCTCAAGAACTCATGGCC 1200
Query 1291 AAAGACAGAACTGGAGAGATTGTTCCTTATCATCCACCATTTAACTTAGATCCTGAAGAG 1350
||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1201 AAAGATAGAACTGGAGAGATTGTTCCATATCACCCACCTTTTAACTTAGATCCTGAAGAG 1260
Query 1351 GGCTCAGCATCAGTTCGGCGCTGGAGGGACGGTAGTTTGGAGATGGACTTACCGATGATA 1410
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1261 GGCTCAGCATCAGTTCGGCGCTGGAGGGACGGTAGTTTAGAGATGGATTTACCGATGATA 1320
Query 1411 CAACTCAAAGAGCTTTTCAATGTCAACCATTTCATTGTCAGTCAAGCCAACCCTCACATA 1470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1321 CAACTCAAAGAGCTTTTCAATGTCAACCATTTCATTGTCAGTCAAGCCAACCCTCATATA 1380
Query 1471 GCACCCTTCTTGAGGATGAAGGAGTTTGTGAGAGCTTGTGGAGGTCGATTTGCAGCAAAG 1530
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1381 GCACCATTCTTGAGGATGAAGGAGTTTGTAAGAGCTTGTGGAGGTCGATTTGCAGCAAAG 1440
Query 1531 CTCGCGCAACTCGCGGAGATGGAAGTGAAGCATAGATGTAATCAAGTACTAGAACTCGGG 1590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CTCGCGCAACTCGCGGAGATGGAAGTGAAGCATAGATGTAATCAAGTACTAGAACTCGGG 1500
Query 1591 CTTCCTCTAAGAGAAGTAGCTTCACTATTTGCTCAAGAATGGGAAGGCGATGTCACAATT 1650
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1501 CTTCCTCTACGAGAAGTAGCTTCACTATTTGCTCAAGAATGGGAAGGCGATGTCACTATC 1560
Query 1651 GTCATGCCAGCTACTTTTTCTCAGTACTTGAAGATCATACAAAATCCAAGCAATGTAGAG 1710
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1561 GTCATGCCAGCTACTTTTTCTCAGTACTTGAAGATCATACAGAACCCAAGCAATGTAGAG 1620
Query 1711 ATTCAAAAGGCAGCAAATCAAGGAAGGAGATGCACCTGGGAAAAACTAGCAGTAATCAAA 1770
||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1621 ATTCAAAAGGCGGCAAATCAAGGAAGGAGATGCACCTGGGAGAAACTCGCAGTAATCAAA 1680
Query 1771 GCAAACTTCGGGATCGAACTAGCACTCGACGAGTGCGTCACCGTTCTTAACCACATGCGC 1830
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1681 GCAAACTTTGGGATCGAACTAGCACTCGACGAGTGCGTCGCCGTTCTTAACCACATGCGC 1740
Query 1831 CGCCTTAAACGCAGCGCAGAAAGAGCCGCTGCTTTCTCCGCCATCTCTTCCTCTCCACCA 1890
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1741 CGCCTAAAACGCAGCGCTGAAAGAGCCGCTGCTTTCTCCGCCATCTCATCCTCACCGCCA 1800
Query 1891 TCTAAACATCTTTTGGCCGGAACCAATAGATTCAACGCCTCCAAAAGAATCCCTTCCTGG 1950
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TCTAAACACCTTTTGGCCGGAACCAATAGATTCAACGCCTCCAAAAGAATCCCTTCCTGG 1860
Query 1951 AATTGTATAGCTCGTCAGAACTCCTCCGGATCCGTCGATGATGATGTCCTAGCTGAAGCT 2010
|| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1861 AACTGTATAGCTCGTCAGAACTCATCCGGATCCGTCGACGATGATGTACTAGCTGAAGCT 1920
Query 2011 TCACGGTTGTACCAGCATATCGTGGTTGGATCTGGGAGGAATAGTAATCGAACCAGTAAC 2070
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1921 TCACGGTTGTACCAGCATATCGTGGTTGGATCCGGGAGGAATAGTAATCGAACCAGCAAC 1980
Query 2071 TTAAGCCATACCTATGACGCAGGAAGCGAATGTGATTCTCCAGAAGCTGAAGATTGGACT 2130
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1981 TTAAGCCATTCCTATGACGCAGGAAGCGAATGTGATTCTCCAGAAGCTGAAGACTGGACT 2040
Query 2131 AGATCTGGCGGACCATTGATGAGGACCAATTCTGCTCAGATGTTCACTGACTACGTCCAG 2190
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2041 CGATCTGGTGGACCATTGATGAGGACCAATTCTGCTCAGATGTTCACAGACTACGTCCAG 2100
Query 2191 AATCTCGACGCCGTTGATCCGGAACAGATTAGAGCTTCGGAGAACGATTCGATTGTAGCT 2250
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 2101 AATCTCGACGCCGTTGATCCCGAACAGATTAGAGCTTCGGAGAACGATTCGATTATGGCT 2160
Query 2251 GCTTCGTCGTCTTCTCATAGCATCACTGTCACGGAAGGCGATTATCTTCAGACGGGAAGA 2310
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2161 GCTTCTTCGTCTTCTCATAGCATCACTGTCACGGAAGGCGATTATCTGCAGACGGGAAGA 2220
Query 2311 ACACACAATGGATTTGTGTTGAATCTCGTTAGAGGAGAGAATTTGAGGATGAATTCA-GA 2369
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 2221 ACACACAACGGATTCGTGTTGAATCTCGTAAGAGGAGAGAATTTGAGGATGAAT-CAAGA 2279
Query 2370 GCCGGAAGATAGCCAAAACGAAAGTGAAATTCCGGAGACTCCGGAAAGCGTGCAACTTG- 2428
| ||||||||||| |||||||||||||| |||||||| | ||||||| |||
Sbjct 2280 TCTGGAAGATAGCCCAAACGAAAGTGAAACTCCGGAGA----G-----CGTGCAA-TTGG 2329
Query 2429 ATTCGCCGGAAAAGGACATTATTGACGGAGAGAGCTCGGCGTCGGAAGACGGAGACGCTC 2488
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2330 ATTCGCCGGAAAAGGACATTATTGACGGAGATAGCTCGGCGTCGGAAGACGGAGACGCTC 2389
Query 2489 AGGCGAATCTAATCCATGA 2507
|||||||||||||||||||
Sbjct 2390 AGGCGAATCTAATCCATGA 2408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107071678695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5