BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G57157.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938687 jgi|Araly1|938687|scaffold_502878.1                        388    7e-108


> Ahg938687 jgi|Araly1|938687|scaffold_502878.1
Length=277

 Score =  388 bits (210),  Expect = 7e-108
 Identities = 228/237 (96%), Gaps = 0/237 (0%)
 Strand=Plus/Plus

Query  1    ATGGCCGGCCTTCAATATAGTTTCTTCCCGACCGACTTCTTCTACCCACGAGCTTCTCCT  60
            |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGGCCGGACTTCAATACAGTTTCTTCCCGACCGACTTCTTCTACCCACGAGCTTCTCCT  80

Query  61   CCGGCTACGACAAGCCTTGTCGCCACCAATCCAAAACTGGAGAAAACCCAAAAGAGAGAT  120
            |||||||| ||||||||||| ||||||||||| ||||| ||||||| |||||||||||||
Sbjct  81   CCGGCTACAACAAGCCTTGTAGCCACCAATCCGAAACTAGAGAAAATCCAAAAGAGAGAT  140

Query  121  GGTTTAGTAGTGATTGATGAAACTCGTGCTTCTCTGTCTCTGTTTATACGTGAAAAGAAG  180
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  141  GGTTTAGTAGTGATTGATGAAACTCGTGCTTCTTTGTCTCTGTTTATACGTGAAAAGAAG  200

Query  181  ACTAATCAGTCACAAACATGGAAGAAGCAGCCACTTTGGATCGAAGATGACATGTGA  237
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  201  ACTAATCAGTCACAAACATGGAAGAAGAAGCCACTTTGGATCGAAGATGACATGTGA  257



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5