BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G57160.1

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg324226 jgi|Araly1|324226|fgenesh1_pm.C_scaffold_5001770           145    4e-34
  Ahg483214 jgi|Araly1|483214|fgenesh2_kg.4__2274__AT2G41420.1        87.9    8e-17


> Ahg324226 jgi|Araly1|324226|fgenesh1_pm.C_scaffold_5001770
Length=264

 Score =  145 bits (78),  Expect = 4e-34
 Identities = 135/162 (83%), Gaps = 5/162 (3%)
 Strand=Plus/Plus

Query  71   CAACCTCCTGCTGTTGGTGTTCCTCCTTCTCATGCTTATCCGGCGGAAGGACCACCCAAG  130
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct  7    CAACCTCCTGCTGTTGGTGTTCCTCCTTCTCAAGGTTATCCGGCGGAAGGACCACCCAAG  66

Query  131  GACGCTTATCCACCTCCGGGACAACCCT-ATCCTCAGCAAGGATATCC-T--CCTCCGCA  186
            |||||||||||||| |  || | || || |||| |  |  ||| | || |  ||||||||
Sbjct  67   GACGCTTATCCACC-CAAGGTCGACGCTTATCCACCTCCGGGACAACCCTATCCTCCGCA  125

Query  187  GGGATATCCTCAACAAGGTTATCCTCCTCAAGGTTATCCTCC  228
             || |||||||  || || |||||||  ||||||||||||||
Sbjct  126  AGGTTATCCTCCGCAGGGCTATCCTCAACAAGGTTATCCTCC  167


 Score =  124 bits (67),  Expect = 6e-28
 Identities = 88/97 (91%), Gaps = 6/97 (6%)
 Strand=Plus/Plus

Query  122  CCACCCAA-G--GACGCTTATCCACCTCCGGGACAACCCTATCCTCAGCAAGGATATCCT  178
            |||||||| |  |||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct  76   CCACCCAAGGTCGACGCTTATCCACCTCCGGGACAACCCTATCCTCCGCAAGGTTATCCT  135

Query  179  CCTCCGCAGGGATATCCTCAACAAGGTTATCCTCCTC  215
            ||   |||||| |||||||||||||||||||||||||
Sbjct  136  CC---GCAGGGCTATCCTCAACAAGGTTATCCTCCTC  169


> Ahg483214 jgi|Araly1|483214|fgenesh2_kg.4__2274__AT2G41420.1
Length=673

 Score = 87.9 bits (47),  Expect = 8e-17
 Identities = 132/170 (78%), Gaps = 17/170 (10%)
 Strand=Plus/Plus

Query  59   ACAATGAGTCA--ACAA-CCTCCTGCTGTTGGTGTTCCTCCTTCTCATGCTTATCCGGCG  115
            |||||||| ||  |||| |  ||| |||| |||||||||||| |||| | ||||||  ||
Sbjct  144  ACAATGAGCCAGTACAATCAACCTCCTGTCGGTGTTCCTCCTCCTCAAGGTTATCCACCG  203

Query  116  GAAGGACCA-CCCAAGGACGCTTATCCACCTC-CGG-GA-CAACC-C-----TATCCTCA  165
            || |||  | || ||||| ||||||||||| |  ||  | |  || |     ||||||||
Sbjct  204  GAGGGA-TATCCAAAGGATGCTTATCCACCACAAGGATATCCTCCTCATGGATATCCTCA  262

Query  166  GCAAGGATATCCTCCTCCGCAGGGATATCCTCAACAAGGTTATCCTCCTC  215
            |||||| ||||| |||   |||||||||||||||||||||||||||||||
Sbjct  263  GCAAGGCTATCCACCT---CAGGGATATCCTCAACAAGGTTATCCTCCTC  309



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22263783528


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5