BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57180.1
Length=2233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486162 jgi|Araly1|486162|fgenesh2_kg.5__2154__AT3G57180.1 2344 0.0
> Ahg486162 jgi|Araly1|486162|fgenesh2_kg.5__2154__AT3G57180.1
Length=2051
Score = 2344 bits (1269), Expect = 0.0
Identities = 1389/1446 (96%), Gaps = 12/1446 (1%)
Strand=Plus/Plus
Query 772 AAGAAGAAACGGGTTTCCAAAACAGAGAGGAAGAAGATAGCTAGAGAGGAGGCAAAGAAA 831
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 616 AAGAAGAAACGGGTTTCGAAAACAGAGAGGAAGAAGATAGCTAGGGAAGAGGCAAAGAAA 675
Query 832 GACAATTATGATGATGTGACTGTGTGTGCTCGTTGCCATTCTCTGAGGAATTATGGCCAG 891
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 676 GACAATTATGATGATGTGACGGTGTGTGCTCGTTGCCATTCTCTGAGGAATTATGGCCAG 735
Query 892 GTGAAGAATCAGGCTGCAGAGAATCTCTTACCCGATTTTGATTTCGATAGGTTGATCTCA 951
||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||
Sbjct 736 GTGAAGAATCAGGCTGCAGAGAACCTCTTACCAGATTTTGATTTTGATAGGTTGATATCA 795
Query 952 ACTAGACTGATCAAACCGATGAGTAACTCCAGCACTACAGTTGTAGTCATGGTTGTTGAT 1011
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 796 ACTAGACTGATCAAACCAATGAGTAATTCCAGCACTACAGTTGTAGTCATGGTTGTTGAT 855
Query 1012 TGTGTAGACTTTGATGGTTCGTTTCCCAAACGAGCTGCCAAGTCTCTGTTTCAAGTGCTT 1071
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 856 TGTGTCGACTTTGATGGTTCGTTTCCCAAACGAGCAGCCAAGTCTCTGTTTCAAGTGCTT 915
Query 1072 CAAAAAGCTGAAAATGATCCTAAGGGTAGCAAAAACCTCCCAAAACTTGTACTTGTTGCA 1131
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 916 CAAAAAGCTGAAAATGATCCTAAGGGTAGCAAAAACCTCCCAAAACTTGTGCTTGTTGCA 975
Query 1132 ACAAAAGTAGACTTACTTCCTACACAGATTTCACCAGCTCGGTTAGACCGATGGGTGCGC 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 ACAAAAGTAGACTTACTTCCTACACAGATTTCACCAGCTCGGTTAGACCGATGGGTGCGC 1035
Query 1192 CACCGTGCCAAGGCTGGAGGAGCACCTAAGCTAAGTGGGGTTTATATGGTTAGTGCTCGC 1251
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1036 CACCGTGCCAAGGCTGGAGGAGCTCCTAAGCTAAGTGGGGTTTATATGGTTAGTGCTCGC 1095
Query 1252 AAAGATATTGGTGTTAAGAATCTGTTAGCTTACATTAAAGAGTTGGCTGGTCCAAGAGGA 1311
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1096 AAAGATCTTGGTGTTAAGAATCTGTTAGCGTACATTAAAGAGTTGGCTGGTCCAAGAGGA 1155
Query 1312 AATGTGTGGGTTATTGGAGCTCAGAACGCGGGGAAATCTACTTTGATTAATGCCTTATCC 1371
|| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1156 AACGTGTGGGTTATTGGATCTCAGAACGCCGGGAAATCTACTTTGATTAATGCCTTATCC 1215
Query 1372 AAGAAAGATGGTGCAAAGGTCACGAGGCTCACGGAAGCTCCAGTTCCTGGAACAACTCTT 1431
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1216 AAGAAAGATGGTGCAAAGGTCACGAGGCTCACGGAAGCTCCGGTTCCTGGAACAACTCTT 1275
Query 1432 GGAATATTGAAAATTGGCGGAATATTGTCTGCAAAGGCTAAGATGTATGACACTCCCGGC 1491
|||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1276 GGAATATTGAGAATTGGAGGAATATTGTCTGCAAAGGCGAAGATGTATGACACTCCAGGC 1335
Query 1492 CTTTTGCATCCCTACCTTATGTCCCTGAGATTGAATTCAGAGGAGCGGAAAATGGTAGAG 1551
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1336 CTTTTGCATCCCTACCTTATGTCCCTGAGATTGAATCCAGAGGAGCGGAAAATGGTAGAA 1395
Query 1552 ATAAGGAAGGAAG-TTCAACCTCGGAGTTACAGAGTCAAGGCAGGACAGTCTGTTCACAT 1610
|||||||||| || ||||||||||||||||| || | ||||||||||||||||||||
Sbjct 1396 ATAAGGAAGG-AGCTTCAACCTCGGAGTTAC--AG---A-GCAGGACAGTCTGTTCACAT 1448
Query 1611 TGGTGGCCTGGTCAGGCTAGACCTCGTTTCTGCTTCAGTTGAAACAATATACATTACAAT 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 TGGTGGCCTGGTCAGGCTAGACCTCGTTTCTGCTTCAGTTGAAACAATATACATTACAAT 1508
Query 1671 ATGGGCATCACATAGTGTTTCATTGCATCTAGGAAAAACAGAGAATGCCGAAGAAATATT 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 ATGGGCATCACATAGTGTTTCATTGCATCTAGGAAAAACAGAGAATGCCGAAGAAATATT 1568
Query 1731 CAAGGGCCATTCCGGTTTACGCCTTCAGCCACCAATTGGAGAGAACAGAGCGTCTGAATT 1790
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1569 CAAGGGCCATTCAGGTTTACGCCTTCAGCCACCGATTGGAGAGAACAGAGCGTCTGAATT 1628
Query 1791 GGGAACATGGGAAGAGAAGGAGATTCAGGTGTCGGGAAATAGCTGGGACGTGAAAAGCAT 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GGGAACATGGGAAGAGAAGGAGATTCAGGTGTCGGGAAATAGCTGGGACGTGAAAAGCAT 1688
Query 1851 AGACATTTCAGTGGCTGGTCTTGGCTGGTTATCCCTGGGCCTCAAAGGTGCAGCAACACT 1910
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1689 AGACATTTCAGTGGCTGGTCTTGGCTGGTTATCCCTTGGTCTCAAAGGTGCAGCAACACT 1748
Query 1911 AGCATTGTGGACTTATCAGGGGATTGATGTAACCTTGAGAGAACCATTGGTTATTGACCG 1970
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1749 AGCATTATGGACTTATCAGGGGATTGATGTAACCTTGAGAGAACCGTTGGTTATTGACCG 1808
Query 1971 CGCACCATATCTTGAGCGGCCTGGCTTCTGGTTGCCAAAAGCCATCACCGAAGTGCTTGG 2030
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 CGCACCATTTCTTGAGCGGCCTGGCTTCTGGTTGCCAAAAGCCATCACCGAAGTGCTTGG 1868
Query 2031 AACACATTCTAGTAAGCTTGTTGATGCTCGTAGGAGGAAGAAGCAACAAGACAGCACAGA 2090
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1869 AACGCATTCTAGTAAGCTTGATGATGCTCGTAGGAGGAAGAAGCAACAAGACAGCACAGA 1928
Query 2091 TTTTCTCTCTGATAGTGTTGCTTAGTATAACCTGTATCGACTTATTATTAGCTTTCATCA 2150
|||||||||||||| |||| | ||||| | ||||||| ||||||| ||||||||||||||
Sbjct 1929 TTTTCTCTCTGATATTGTTTCATAGTA-A-CCTGTATGGACTTATAATTAGCTTTCATCA 1986
Query 2151 GTGTAGTCATTTTGGAAAGTTTATATTGGTTT-ATGTATTTTAAAACAATTTTAAATCCA 2209
|||||||||||||||||||||||||||| || | |||||||||| || ||||||| |||
Sbjct 1987 TTGTAGTCATTTTGGAAAGTTTATATTGGCTTGA-GTATTTTAAACCATTTTTAAAGCCA 2045
Query 2210 CATCGA 2215
||||||
Sbjct 2046 CATCGA 2051
Score = 900 bits (487), Expect = 0.0
Identities = 576/618 (93%), Gaps = 10/618 (2%)
Strand=Plus/Plus
Query 109 AGAAGTGACACGCTCTCAAACGAAATGGTGGTTTTGATTTCAAGTACAGTGACGATTTGC 168
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGTGACACACTCTCAAACGAAATGGTGGTTTTGATTTCAAGTACAGTGACGATTTGC 60
Query 169 A-ATGTTAAACCAAAGCTTGAAGACGGAAACTTTCGCGTTAGCCGGTTGATACACAGACC 227
| | || |||||||||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 61 AGA-GTAAAACCAAAGCTTGAAGACGGAAGCTTTCGCGTTAGCCGTTTGATACCCAGACC 119
Query 228 CGAGGTTCCATTTTTCTCAGGATTGAGTAAT--G-AGAAGAAGAAGAAATGTGCAGTTTC 284
||| |||||||||||||| ||||||||| || | ||||||||||||||||||||||||
Sbjct 120 CGAAGTTCCATTTTTCTCTGGATTGAGTGATGAGAAGAAGAAGAAGAAATGTGCAGTTTT 179
Query 285 GGTTATGTGTTTAGCTGTGAAGAAAGAACAAGTTGTTCAAAGCGTGGAGAGTGTTAACGG 344
||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 GGTTACGTATTTAGCTGTGAAGAAAGAACAAGTTGTTCAAAGCGTGGAGAGTGTTAAAGG 239
Query 345 GACGATTTTTCCGAAGAAATCAAAAAATCTTATCATGAGCGAAGGAAGAGATGAAGATGA 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GACGATTTTTCCGAAGAAATCAAAAAATCTTATCATGAGCGAAGGAAGAGATGAAGATGA 299
Query 405 GGACTATGGGAAGATTATTTGTCCAGGTTGTGGGATTTTTATGCAGGACAATGATCCAGA 464
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 GGAGTATGGGAAGATTATTTGTCCAGGCTGTGGGATTTTTATGCAGGACAATGATCCAGA 359
Query 465 TTTACCCGGATATTATCAGAAGAGAAAGGTCATTGCGAATAACTTGGAAGGTGATGAACA 524
||| || |||| |||||||||||||||||||||||| || |||||||||| ||||||| |
Sbjct 360 TTTGCCTGGATTTTATCAGAAGAGAAAGGTCATTGCAAAGAACTTGGAAGTTGATGAAGA 419
Query 525 TGTGGAAAATGATGAGCTTGCTGGGTTtgaaatggttgatgatgatgctgatgaggagga 584
| |||| |||||||||||| ||||||||||||||||| |||||||| | | ||||||
Sbjct 420 GGAGGAAGATGATGAGCTTGATGGGTTTGAAATGGTTGTTGATGATG-AG-T-TGGAGGA 476
Query 585 ggaagg-ggaagatgatgaaatggatgatgagatCAAGAATGCAATAGAAGGTAGCAACT 643
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GG-AGGAGGAAGATGATGAAATGGATGATGAGATCAAGAATGCAATAGAAGGTAGCAACT 535
Query 644 CTGAAAGTGAGAGTGGGTTTGAATGGGAATCAGATGAGTGGGAAGAAAAGAAGGAAGTGA 703
||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||||||||
Sbjct 536 CTGAAAGTGAGAGTGAGTTTGACTGGGAATCAGATGAGTGGGAAGACAAGGAGGAAGTGA 595
Query 704 ATGATGTTGAATTGGATG 721
||||||||||||||||||
Sbjct 596 ATGATGTTGAATTGGATG 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84065170715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5