BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57190.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324229 jgi|Araly1|324229|fgenesh1_pm.C_scaffold_5001773 1825 0.0
> Ahg324229 jgi|Araly1|324229|fgenesh1_pm.C_scaffold_5001773
Length=1230
Score = 1825 bits (988), Expect = 0.0
Identities = 1152/1231 (94%), Gaps = 11/1231 (1%)
Strand=Plus/Plus
Query 66 ATGGCGGCAAAGATTATTGGTGGATGCTGCTCATGGCGACGCTTTTACAGGAAGAGAACA 125
|||||||| |||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCGGCCAAGATTCCTGGTGGAGGCTGCTCATGGCGACGCTTTGACAGGAAGAGAACA 60
Query 126 TCATCTCGATTTCTGATTTTCTCTGTTCGAGCCTCTAGTTCCATGGATGACATGGACACC 185
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CCATCTCGATTTCTGATATTCTCTGTTCGAGCCTCTAGTTCCATGGATGATATGGACACA 120
Query 186 GTCTACAAGCAATTGGGATTGTTTTCACTAAAGAAGAAGATTAAAGATGTTGTTCTTAAG 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCTACAAGCAATTGGGATTGTTTTCACTAAAGAAGAAGATTAAAGATGTTGTTCTTAAG 180
Query 246 GCTGAGATGTTTGCACCGGATGCTCTTGAGCTTGAAGAAGAGCAGTGGATAAAGCAAGAA 305
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GCTGAGATGTTTGCACCGGATGCTCTTGAGCTTGAAGAAGAGCAATGGATAAAGCAAGAA 240
Query 306 GAAACAATGCGTTACTTTGATTTATGGGATGATCCCGCTAAATCTGATGAGATTCTTCTC 365
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GAAACAATGCGTTACTATGATTTATGGGATGATCCAGCTAAATCTGATGAGATTCTTCTC 300
Query 366 AAATTAGCTGATCGAGCTAAAGCAGTCGATTCCCTCAAAGACCTCAAATACAAGGCTGAA 425
||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||| |||
Sbjct 301 AAATTAGCTGATCGAGCAAAAACAGTTGATTCTCTCAAAGACCTCAAATACAAGGCAGAA 360
Query 426 GAAGCTAAGCTGATCATACAATTGGGTGAGATGGATGCTATAGATTACAGTCTCTTTGAG 485
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAGCTAAGCTAATCATACAATTGGGTGAGATGGATGCTATAGATTACAGTCTCTTTGAG 420
Query 486 CAAGCCTATGATTCATCACTCGATGTAAGTAGATCGTTGCATCACTATGAGATGTCTAAG 545
||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 421 CAAGCTTACGATTCATCGCTCGATGTAAGCAGATCTTTGCATCACTATGAGATGTCTAAG 480
Query 546 CTTCTTAGGGATCAATATGACGCTGAAGGCGCTTGTATGATTATCAAATCTGGATCTCCA 605
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 481 CTTCTTAGGGATCAATATGACGCTGAAGGCGCTTGTATGATTATTAAATCTGGATCTCAA 540
Query 606 GGCGCAAAA--TC------T-CAGATATGGACAGAGCAAGTTGTAAGTATGTATATCAAA 656
| ||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GACGCAAAATCTCAGGATTTGCAGATATGGACAGAGCAAGTTGTAAGTATGTATATCAAA 600
Query 657 TGGGCAGAAAGGCTAGGCCAAAACGCGCGGGTGGCTGAGAAATGTAGTTTATTGAGTAAT 716
|||||||||| ||||||||||||||| | ||||||||||||||||| || ||||| |||
Sbjct 601 TGGGCAGAAAAGCTAGGCCAAAACGCTAGAGTGGCTGAGAAATGTAGCTTCTTGAGCAAT 660
Query 717 AAAAGTGGCGTAAGTTCAGCCACGATAGAGTTTGAATTCGAGTTTGCTTATGGTTATCTC 776
|||||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 661 AAAAGTGGTGTAAATTCAGCCACAATAGAGTTTGAATTCGACTTTGCTTATGGTTATCTC 720
Query 777 TTAGGTGAGCGAGGTGTGCACCGCCTTATCATAAGTTCCACTTCTAATGAGGAATGTTCA 836
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 TTAGGTGAGCGAGGCGTGCACCGCCTTATCATAAGTTCCACTTCTAGTGAGGAATGTTCA 780
Query 837 GCGACTGTTGATATCATACCACTATTCTTGAGAGCATCTCCTGATTTTGAAGTAAAGGAA 896
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCGACTGTTGATATCATACCGCTATTCTTGAGAGCATCTCCTGATTTTGAAGTAAAGGAA 840
Query 897 GGTGATTTGATTGTATCGTATCCTGCAAAAGAGGATCACAAAATAGCTGAGAATATGGTT 956
| |||||||||||| |||||||||||||||||| | || |||||||||||||||||||||
Sbjct 841 GATGATTTGATTGTTTCGTATCCTGCAAAAGAGAACCATAAAATAGCTGAGAATATGGTT 900
Query 957 TGTATCCACCATATTCCGAGTGGAGTAACACTACAATCTTCAGGAGAAAGAAACCGGTTT 1016
|||| || ||||| ||||||||| |||| | |||| |||||||||||||||||||||
Sbjct 901 AGTATTCAACATATACCGAGTGGAATAACTGTTGAATCGTCAGGAGAAAGAAACCGGTTT 960
Query 1017 GCAAACAGGATCAAAGCTCTAAACCGGTTGAAGGCGAAGCTACTTGTGATAGCAAAAGAG 1076
||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||
Sbjct 961 GCAAACAGGATCAAAGCGCTAAACCGATTAAAGGCGAAGCTGCTTGTGATAGCAAAAGAG 1020
Query 1077 CA-AAAGGTTTCGGATGTAAATAAAATCGACAGCAAGAACATTTTGGAACCGCGGGAAGA 1135
|| ||| ||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1021 CAGAAA-ATTTCGGATGTAAATAAAATAAACAGCAAGAACATTTTGGAACCATGGGAAGA 1079
Query 1136 AACCAGGAGTTATGTCTCTAAGGGTCACAAGATGGTGGTTGATAGAAAAACCGGTTTAGA 1195
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 AACCAGGAGATATGTCTCTAAGGGTCAAAAGATGGTGGTTGATAGAAAAACCGGTTTAGA 1139
Query 1196 GATTCTGGACCTGAAATCGGTCTTGGATGGAAACATTGGACCACTCCTTGGAGCTCATAT 1255
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 GATTCTGGACCTGAAATCGGTCTTGGATGGGAACATTGGACCACTCCTTGGAGCTCATAT 1199
Query 1256 TAGCATGAGAAGATCAATTGATGCGATTTAG 1286
||| |||||||||||||||||||||||||||
Sbjct 1200 TAGTATGAGAAGATCAATTGATGCGATTTAG 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5