BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57200.1
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898661 jgi|Araly1|898661|Al_scaffold_0005_2627 2333 0.0
Ahg902111 jgi|Araly1|902111|Al_scaffold_0004_2761 1046 0.0
Ahg935015 jgi|Araly1|935015|scaffold_403003.1 431 1e-119
> Ahg898661 jgi|Araly1|898661|Al_scaffold_0005_2627
Length=1479
Score = 2333 bits (1263), Expect = 0.0
Identities = 1374/1428 (96%), Gaps = 5/1428 (0%)
Strand=Plus/Plus
Query 190 TCTGtcttcttctccttcttcatcatcttcctcgcgtcttttcctgctcgtgacccttct 249
||| |||||||| | || || ||||||| ||||||||||||| |||||||||| |||||
Sbjct 49 TCT-TCTTCTTCAACATCATCGTCATCTTACTCGCGTCTTTTCTTGCTCGTGACGCTTCT 107
Query 250 tcctctctCTCTCGCCTGTTTCGCCTTCGTTCTCCAATGGCGTGGCGGTCTCGACGACCC 309
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 108 TCCTCTCTCTCTCGCCTGTCTCGCCTTCGTTCTCCAATGGCGTGGCGGACTCGACGACCC 167
Query 310 CGTTACGCATTGGTCAATAGATCATCACGAGTTTCCCGGAATGGTTACAACCCAAGAGAA 369
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GGTTACGCGTTGGTCAATAGATCATCACGAGTTTCCCGGAATGGTTACAACCCAAGAGAA 227
Query 370 ACGGT-CTCTGCGTCGTTCAGTTTCTGATTCGGGTTGCGTTGATCTTCTAGGTCAGAGTC 428
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ACGGTCCT-TGCGTCGTTCAGTTTCTGATTCGGGTTGCGTTGATCTTCTAGGTCAGAGTC 286
Query 429 GTTCCCCTTCGTTTCCTTATTTCCGGAATTGGAAATTTGATTACCACTCGGATCTGAAAC 488
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 287 GTGCCCCTTCGTTTCCTTATTTCCGGAATTGGAAATTTGATTACGACTCGGATCTGAAAC 346
Query 489 CCAGGATATGCATTACAACAAGCACTTCTGCTGGCTTAGAGCAAACATTGCCATGGATTT 548
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 347 CTAGGATATGCATTACAACAAGCACTTCTGCTGGCTTAGAGCAAACACTGCCATGGATTT 406
Query 549 ACTTTCACAAAGTTATTGGAGTTTCAACATTTTATCTATTTGTTGAGGGGAAGGCTGCAT 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 ACTTTCACAAAGTTATTGGAGTTTCAACATTTTATCTATTTGTTGAGGGGAAGGCTGCAT 466
Query 609 CTCCAAATGTGTCTCGAGTTTTGGAGACCATCCCTGGTGTAAAAGTTATTTACAGGACAA 668
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 467 CTCCAAATGTGTCTCGAGTTTTGGAGACCATCCCTGGTGTAAAAGTTATACACAGGACAA 526
Query 669 AGGAATTAGAAGAAAAACAGGCTAAAAGCCGGATATGGAATGAGACTTGGCTGTCGAGCT 728
| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 527 AAGAGTTGGAAGAAAAACAGGCTAAAAGCCGGATTTGGAATGAGACTTGGCTGTCGAGCT 586
Query 729 TCTTCTACAAACCGTGTAACTATGAATTATTCGTGAAACAGTCCTTGAACATGGAAATGG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TCTTCTACAAACCGTGTAACTATGAATTATTCGTGAAACAGTCCTTGAACATGGAAATGG 646
Query 789 CAATCACCATGGCTCAGGACGCTGGTATGGAATGGATCATTCATCTTGACACTGATGAGC 848
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 647 CAATCACCATGGCTCAGGATGCTGGTATGGAATGGATAATTCATCTTGACACCGATGAGC 706
Query 849 TTATACATCCTTCTGGAACCCATGAATATTCTTTACGCAAGTTGCTGGGAAATATTTCTG 908
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 707 TTATACATCCTTCTGGAACCCATGAATATTCTTTACGGAAGTTGCTGGGAAATATTTCTG 766
Query 909 CAGACGTGGATGTAGTTATCTTTCCAAATTATGAGAGCAGCGTTGAGAGAGATGATATCA 968
||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 767 CAGACGTAGATATAGTTATCTTTCCAAATTATGAGAGCAGCGTTGAGCGAGATGATATCA 826
Query 969 GGGAACCTTTCAGTGAGGTATCAATGTTCAAGAAGAATTTTGACCATCTTCTGAGAGATG 1028
|||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 827 GGGAACCTTTTAGCGAGGTATCAATGTTCAAGAAGAATTATGACCATCTTCTGAGAGATG 886
Query 1029 TCTACTTTGGAAACTATAAAGATGCCACTCGTGGAAATCCAAACTATTTCTTAACCTATG 1088
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 887 TCTACTTTGGAAACTATAAAGACGCCACTCGTGGAAATCCAAACTATTTCTTAACCTATG 946
Query 1089 GAAATGGGAAAGCTGCTGCCCGTGTTCAGGACCATCTTCGTCCCAATGGTGCTCATCGAT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GAAATGGGAAAGCTGCTGCCCGTGTTCAGGACCATCTTCGTCCCAATGGTGCTCATCGAT 1006
Query 1149 GGCACAACTACAGAAAGAGTCCAAATGAGGTCAAACTTGAAGAAGCTGCCGTGCTGCACT 1208
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1007 GGCACAACTACAGAAAGAGTCCAAATGAGGTCAAACTAGAAGAAGCTGCCGTGCTGCACT 1066
Query 1209 ATACTTATCCCAGATTTTCAGATCTTACTTCAAGACGTGATCGTTGTGGCTGTAAGCCCA 1268
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 ACACTTATCCCAGATTTTCAGATCTTACTTCAAGACGTGATCGTTGTGGCTGTAAGCCCA 1126
Query 1269 CTAAAGTGGATGTCAAGAGATGTTTCATGCTAGAGTTTGACAGAGCTGCATTTATTATTG 1328
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1127 CTAAAGTGGATGTCAAGAGATGTTTCATGCTGGAGTTTGACAGAGCTGCATTTATTATTG 1186
Query 1329 CTTCAACAGCGAGTTCAGAGGAAATGCTGCAATGGTACAGAGAGCATGTTGTGTGGACTG 1388
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1187 CTTCAACCGCGAGTTCAGAGGAAATGCTTCAATGGTACAGAGAGCATGTTGTGTGGACTG 1246
Query 1389 ATGAAAAATTGAAGTTGAAACTCCTTAGGAAGGGAATTCTAACCCGCATTTATGCTCCCA 1448
||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 1247 ATGAAAAATTGAAGTTGAAACTCATTAGGAAGGGAATTCTGACCCGCATTTATGCCCCCA 1306
Query 1449 TGGTTATAATCCAAGAGCTAAGAGAAGCGGGTGTTTTTAGCTCTGTGGTAATCGCAGCTC 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TGGTTATAATCCAAGAGCTAAGAGAAGCGGGTGTTTTTAGCTCTGTGGTAATCGCAGCTC 1366
Query 1509 ACAAGTCTC-CTTCGAAGAACTCTTCAACTGCTGATTCGACATCAGGCATTACCCGAGAA 1567
||| ||||| || |||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1367 ACATGTCTCTCT-CGAACAACCCTTCAACTGCTGATTCAACATCAGGCATTACCCGAGAA 1425
Query 1568 TCATCTCAGGAAACTGGTAAGAGGAGGGTGTTGGAATTCCATCTTGAT 1615
|||||| ||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 1426 TCATCTGAGGCAACTGGTAGGAGGAGGGTGTTGGAGTTCCATCTTGAT 1473
> Ahg902111 jgi|Araly1|902111|Al_scaffold_0004_2761
Length=2934
Score = 1046 bits (566), Expect = 0.0
Identities = 1037/1259 (82%), Gaps = 53/1259 (4%)
Strand=Plus/Plus
Query 216 cttcctcgcgtcttttcctgctcgtgacccttcttcctctct-CTCTCGCCTGTTTCGCC 274
||||||| || |||| | ||| | ||| |||||||||| | || | |||||||| |||
Sbjct 1700 CTTCCTCTCGGATTTTGTTACTCATCACCTTTCTTCCTCTTTCCT-TAGCCTGTTTTGCC 1758
Query 275 TTCGTTCTCCAATGGCGTGGCGGTCTCGACGACCCCGTTACGCATTGG-TCAATAGATCA 333
||| | ||||||||||| |||| || |||| |||||||||| ||| || || ||| |
Sbjct 1759 TTCCTCCTCCAATGGCGAAGCGGAATCAACGATTCCGTTACGCAGTGGTTCGAT-GAT-A 1816
Query 334 TC-A-CGAGTTTCCC-GGAATGGTTA-CAAC-CCAAGAGAAACGGTCTCTGCGTCGTTCA 388
| | | | ||||| ||||||| | | | || ||||||| || || | | |||
Sbjct 1817 ACTATC-CG-TTCCCAGGAATGGCCACCGTCTCC--GAGAAAC-GT-TC--C--C-TTC- 1864
Query 389 GTTTCTGATTCGGGTTGCGTTGATCTTCTAGGTCAGAGTCGTTCCCCTTCGTTTCCTTAT 448
| |||||| || | |||||| |||||| |||||||||||| | | ||||||||||||
Sbjct 1865 G-CTCTGATCCGAGCTGCGTTTCTCTTCTGGGTCAGAGTCGTACGCAATCGTTTCCTTAT 1923
Query 449 TTCCGGA-ATTGGAAATTTGATTACCA-CTCGGATCTGAAACCCAGGATATGCATTACAA 506
||| || ||||||| ||||| || | | | ||||| ||||| | |||||| ||||| |
Sbjct 1924 CTCC-GAGATTGGAAGCTTGATCACAAGC-CTGATCTCAAACCTAAGATATGTATTACTA 1981
Query 507 CAAGCACTTCTGCTGGCTTAGAGCAAACATTGCCATGGATTTACTTTCACAAAGTTATTG 566
| |||||||||||||| |||||||| |||||||||||||||| || |||||| || ||||
Sbjct 1982 CGAGCACTTCTGCTGGATTAGAGCAGACATTGCCATGGATTTTCTATCACAAGGTCATTG 2041
Query 567 GAGTTTCAACATTTTATCTATTTGTTGAGGGGAAGGCTGCATCTCCAAATGTGTCTCGAG 626
|||||||||| ||||||||||| ||||| || | ||||| || ||||||||||||||||
Sbjct 2042 GAGTTTCAACTTTTTATCTATTCGTTGAAGGCACTGCTGCTTCCCCAAATGTGTCTCGAG 2101
Query 627 TTTTGGAGACCATCCCTGGTGTAAAAGTTATTTACAGGACAAAG-GAATTAGAAGAAAAA 685
|||||||||| |||||||||||||| ||||| ||||| || ||| || ||||||||| ||
Sbjct 2102 TTTTGGAGACAATCCCTGGTGTAAATGTTATATACAGAAC-AAGAGAGTTAGAAGAAGAA 2160
Query 686 CAGGCTAAAAGCCGGATATGGAATGAGACTTGGCTGTCGA-GCTTCTTCTACAAACCGTG 744
|| |||||||||||||||||||||||||| ||| || || | || ||||||||||| ||
Sbjct 2161 CAAGCTAAAAGCCGGATATGGAATGAGACCTGGTTGGAGAAGTTT-TTCTACAAACCATG 2219
Query 745 TAACTATGAATTATTCGTGAAACAGT-CCTTGAACATGGAAATGGCAATCACCATGGCTC 803
||| || ||||||||||||||||| ||| ||| ||||||||||| ||||| |||||
Sbjct 2220 TAATTACGAATTATTCGTGAAACAAAACCT-GAATATGGAAATGGCTATCACTATGGCA- 2277
Query 804 AGG-ACGCTGGTATGGAATGGATCATT-CATCTTGACACTGATGAGCTTATACATCCTTC 861
||| | ||||||||||| ||||| | | ||||||||||||||||||||| ||||||||||
Sbjct 2278 AGGGATGCTGGTATGGAGTGGAT-ACTGCATCTTGACACTGATGAGCTTGTACATCCTTC 2336
Query 862 TGGAACCCATGAATATTCTTT-ACGCAAGTTGCTGGGAAATATTTCTGCAGACGTGGATG 920
|||||||| ||||||||| || | | || ||||| || || || ||||||| |||||||
Sbjct 2337 TGGAACCCGTGAATATTCCTTGA-GAAATTTGCTCAGAGATGTTCCTGCAGATGTGGATG 2395
Query 921 TAGTTATCTTTCCAAATTATGAGAGCAGCGTTGAGAGAGATGATATCAGGGAACCTTTCA 980
|||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 2396 CAGTTATCTTTACAAATTATGAGAGCAGCATTGAGCGAGATGATATCAAGGAACCTTTCA 2455
Query 981 GTGAGGTATCAATGTTCAAGAAGAATTTTGACCATCTTC-TGAGAGATGTCTACTTTGGA 1039
||||||||||||||||||||||||||| | ||||||| | |||||||| |||| ||||
Sbjct 2456 CTGAGGTATCAATGTTCAAGAAGAATTTCAAACATCTTCCT-AGAGATGTTTACTATGGA 2514
Query 1040 AACTATAAAGATGCCACTCGTGGAAATCCAAACTATTT-CTTAACCTATGGAAATGGGAA 1098
||||||||||| || |||||||| ||||| |||||||| |||| |||||| |||||||||
Sbjct 2515 AACTATAAAGAGGCAACTCGTGGCAATCCGAACTATTTTCTTA-CCTATGCAAATGGGAA 2573
Query 1099 AGCTGCTGCCCGTG-TTCAGGACCATCTTCGTCCCAATGGTGCTCATCGATGGCACAACT 1157
| | ||||| || | |||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 2574 ATCCGCTGCTCG-GATTCAAGACCATCTTCGGCCCAATGGTGCTCATCGATGGCACAATT 2632
Query 1158 ACA-GAAAG-AGTCCAAATGAGGTCAAACTTGAAGAAGCTGCCG-TGCTGCACTATACTT 1214
||| ||| | | ||||| | | |||| | |||||||| | | || ||||| ||||
Sbjct 2633 ACATGAA-GTAC-CCAAACGTCATGGAACTAGGGGAAGCTGC-GATTCTTCACTACACTT 2689
Query 1215 A-TCCCAGATTTTCAGATCTTACTTCAAGACGTGATCGTTGTGGCTGTAAGCCCACTAAA 1273
| || | ||||||||||||||||||||||| |||||| |||||||| || || ||||||
Sbjct 2690 ACTCGAA-ATTTTCAGATCTTACTTCAAGACATGATCGATGTGGCTGCAAACCAACTAAA 2748
Query 1274 GTGGATGTCAAGAGATGTTTCATGCTAGAGTTTGACAGAGCTGCATTTATTATTGCTTCA 1333
| |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 2749 GAAGATGTCAAGAGATGTTTCATGCTAGAGTTTGACAGAGCCGCATTCATCATTGCTTCA 2808
Query 1334 ACAGCGAGTTCAGAGGAAATGCTGCAATGGTACAGAGAGCATGTTGTGTGGACTGATGAA 1393
|| | | ||||||||||||||| |||||||||||||| | ||||| |||||||| |||
Sbjct 2809 ACTTCAACTTCAGAGGAAATGCTCCAATGGTACAGAGAAAAAGTTGTATGGACTGACGAA 2868
Query 1394 AAATTGAAGTTGAAACTCCTTAGGAAGGGAATTCTAACCCGCATTTATGCTCCCATGGT 1452
|| |||| | ||||| |||||||| |||||||| || ||||||||||| || |||||
Sbjct 2869 AATTTGATCCTAAAACTTCTTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATGGT 2927
> Ahg935015 jgi|Araly1|935015|scaffold_403003.1
Length=931
Score = 431 bits (233), Expect = 1e-119
Identities = 526/661 (80%), Gaps = 46/661 (7%)
Strand=Plus/Plus
Query 1043 TATAAAGATGCCACTCGTGGAAATCCAAACTA-TTTCTTAACCTATGGAAATGGGAAAGC 1101
|||||||| || |||||||| ||||| ||||| |||| ||| ||||| |||||||||| |
Sbjct 258 TATAAAGAGGCAACTCGTGGCAATCCGAACTATTTTC-TAAGCTATGCAAATGGGAAATC 316
Query 1102 TGCTGCCCGTG-TTCAGGACCATCTTC-GTCCCAATGGTGCTCATCGATGGCACAACTAC 1159
|| || || | |||| |||||||||| | |||||||||||||||||||||| |||||||
Sbjct 317 CGCCGCTCG-GATTCAAGACCATCTTCAG-CCCAATGGTGCTCATCGATGGCTCAACTAC 374
Query 1160 A-GAAAG-AGTCC-AA-ATGAGGTCAAACTTGAAGAAGCTGCCG-TGCTGCACTATACTT 1214
| | ||| | || || || | | |||| | ||||||| || | || ||||| ||||
Sbjct 375 ATG-AAGTA-CCCAAACATCA--TGGAACTAGGCGAAGCTG-CGATTCTTCACTACACTT 429
Query 1215 ATC-CCAGATTTTCAGATCTTACTTCAAGACGTGATCGTTGTGGCTGTAAGCCCACTAAA 1273
| | | | ||| |||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 430 A-CTCGAAATTCTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACTAAA 488
Query 1274 GTGGATGTCAAGAGATGTTTCATGCTAGAGTTTGACAGAGCTGCATTTATTATTGCTTCA 1333
| |||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct 489 GAAGATGTCAAGAGATGTTTCATGCTAGACTTTGACAGAGCCGCATTCATCATTGCTTCA 548
Query 1334 ACAGCGAGTTCAGAGGAAATGCTGCAATGGTACAGAG--AGCATGTTGTGTGGACTGATG 1391
|| | | ||||||||||||||| ||||||||||||| || | ||||| |||||||| |
Sbjct 549 ACTTCAACTTCAGAGGAAATGCTCCAATGGTACAGAGAAAG-A-GTTGTATGGACTGACG 606
Query 1392 AAAAATTGAAGTTGAAACTCCTTAGGAAGGGAATTCTAACCCGCATTTATGCTCCCATGG 1451
| || |||| | ||||| ||||||| |||||||| || ||||||||||| || ||||
Sbjct 607 ACAATTTGATCCTAAAACTTGTTAGGAAAGGAATTCTGACTCGCATTTATGCACCAATGG 666
Query 1452 TTATAATCCAAGAGCTAAGAGAAGCGGGTGTTTTTAGCTCTGTGGTAA-TCGCAGCTCAC 1510
||||||||||||||||||||||||| |||||||| ||||| ||||||| | ||||||||
Sbjct 667 TTATAATCCAAGAGCTAAGAGAAGCCGGTGTTTTCAGCTCAGTGGTAAATT-CAGCTCAC 725
Query 1511 AAGTCTC-CTTCGAAG-AACTCTT--CAACTGCTGATTCGACATCAGGCATTACCCGAGA 1566
| ||||| || | ||| || | ||||| || | | || ||| ||||| ||||
Sbjct 726 ATGTCTCTCT-C-AAGGAA-TAGAAGCAACT-CT--T-CAACCTCAAAAATTACTAGAGA 778
Query 1567 ATCATCTCAGGAAACTGGTAAGAGGAGGGTGTTGGAATTCCATCTTGATG-T-T-GACGG 1623
||||||||| | |||| || || ||| ||||||| || ||||||| | | | || |
Sbjct 779 ATCATCTCAAGCAACTACTAGGA--AGG-TGTTGGAGTTTGATCTTGAGGATCTTGATGA 835
Query 1624 TGAATC-CCA--AGCATCAGCGGTACCACC-ACAATCGCCTCCAGGCTTGGAAGCAACCC 1679
|||||| ||| ||||||| | ||||||| | |||| ||||||| |||||| ||| ||
Sbjct 836 TGAATCTCCATCAGCATCACCTATACCACCGA-AATCATCTCCAGGATTGGAAACAATCC 894
Query 1680 A 1680
|
Sbjct 895 A 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71609660600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5