BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57210.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg898662 jgi|Araly1|898662|Al_scaffold_0005_2628 612 2e-174
> Ahg898662 jgi|Araly1|898662|Al_scaffold_0005_2628
Length=987
Score = 612 bits (331), Expect = 2e-174
Identities = 553/653 (85%), Gaps = 43/653 (7%)
Strand=Plus/Plus
Query 128 ATCAGGGGACAAACTTAAAGCTCTCTCACGTTAAGAGATACAACAGGACTCTGGCTGCTG 187
||||||||||||||||| | |||||||||||||||||||||||| ||||||| || ||
Sbjct 11 ATCAGGGGACAAACTTAGATATCTCTCACGTTAAGAGATACAACATGACTCTGACT-CT- 68
Query 188 GTGCTTG-CTGTTTCTACATTACTTTGGTTGCAATGCAGCCATCTAGTGGAAGGCGTT-T 245
||| || || || |||||||||||||||||||||| | ||||||||||||| | || |
Sbjct 69 -TGC-TGCCTCTTACTACATTACTTTGGTTGCAATGGATCCATCTAGTGGAAAAC-TTGT 125
Query 246 TAC-TTTTCAGACTTCCGTTTATGAAGAA-GCTTGTGGCCGGCTTGTTTTGACCTCCTTT 303
| | |||||||||| |||| |||||||| | ||||||| | ||| |||||||||||||
Sbjct 126 T-CATTTTCAGACTAACGTTAATGAAGAATG-TTGTGGCAAGTTTGCTTTGACCTCCTTT 183
Query 304 ATTGCTGAAAGACGTCGTCCAGGGAC--AATCATTA-AAACGTCGT-TGGAAAG-AGAAT 358
|||||| |||| ||||| ||| | || | || | | |||| ||| ||| || ||
Sbjct 184 ATTGCT---AGACCTCGTCGAGGCCCTAAAGC--TACAGA-TTCGTCTGG-AAGAAG-AT 235
Query 359 TCT-ACCGCATGGGTAGCTTGCCTGAGTTCCCGCTGGAGAACCCTTTCGAAAACAG-AAA 416
||| || |||||||||||||||||||||||||| |||||| |||||||||||| | |||
Sbjct 236 TCTGTCC-CATGGGTAGCTTGCCTGAGTTCCCGCAGGAGAATCCTTTCGAAAAC-GAAAA 293
Query 417 CCGATTTTACGTGGTGGATGATGAATCAGAGCTGCG-AGCCAATGACTGGATTCGTCTGT 475
|||||||||| |||| | ||||||||||||||| | || ||||||||||||||||||||
Sbjct 294 CCGATTTTACTTGGT-G--GATGAATCAGAGCTG-GAAGACAATGACTGGATTCGTCTGT 349
Query 476 ATCTGGAACTTTCTGTTGCCATATCTGATAGGACCACCACGGATCATGATCTTTCCGGCT 535
|| |||||||||||||||||| ||||||| |||||| || |||||||||||||||| ||
Sbjct 350 ATTTGGAACTTTCTGTTGCCAGATCTGATTGGACCAGCAAGGATCATGATCTTTCCCACT 409
Query 536 TGAGGATTGTGTCA-GTAGCCATTCAAACTATGGAGCCACCCAGTGAGTCCTCTCTCACT 594
||| ||||||| | |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 410 TGAAGATTGTG-AATGTAGCCATAGAAACTATGGAGCCACCGAGTGAGTCCTCTCTCACT 468
Query 595 GCTAAGAATGCAACTGTCTACATAAGGTACATTGACTTTTGTAAGGCTCGCTGTGGTCAG 654
|| || ||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 469 GCCAAAAATGCAACTGTCTACATAAGGTACATTGACTCTTGTGTGGCTCGCTGTGGTCAG 528
Query 655 AACCTTGATCGCATAGCTGTAGTTAGAAGAA-ACCTTCAATGAGACT-ACGGGATGCTTT 712
|| |||||||||| |||||||||||||||| | ||||||||| || |||||||||||
Sbjct 529 AAATTTGATCGCATTGCTGTAGTTAGAAGAAGA--TTCAATGAG-CTTACGGGATGCTTC 585
Query 713 AGTCTCGACGGTTGGAATCAAAGCTCAGATATCATACCCA-AAAAGAAG-GCT 763
| |||||||||||||||||| |||||||| || || || | ||||| || |||
Sbjct 586 ATTCTCGACGGTTGGAATCAGAGCTCAGAGATTATTCC-AGAAAAGCAGAGCT 637
Score = 169 bits (91), Expect = 5e-41
Identities = 135/155 (87%), Gaps = 8/155 (5%)
Strand=Plus/Plus
Query 787 GCGTTTAATTCACAAATCACGGCAG-ATATGGC-GGCG-GC-G-GC--GCACAAACCATG 839
||||||||||| ||||||||||| | | ||||| || | || | || ||||||| |||
Sbjct 768 GCGTTTAATTCGCAAATCACGGC-GCACATGGCGGGGGCGCTGTGCTTACACAAACGATG 826
Query 840 GCGTTGGCTTGGCTCATCGTCTTCGCAAAACAAGATCCATAGAATCAGCCATCCGAAAGT 899
| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 827 GTGTTGGCTTGGCTCATCGTCTTTGCAAAACAAGATCCATAGAATCAGCCATCAGAAAGT 886
Query 900 ATACCCAAAAAGGGTACGAGTCTGAGCGTGAAACT 934
|||||||||||||||| || ||||| ||||||||
Sbjct 887 ATACCCAAAAAGGGTATGACTCTGATTGTGAAACT 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5