BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57220.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938693 jgi|Araly1|938693|scaffold_502884.1 2091 0.0
Ahg483226 jgi|Araly1|483226|fgenesh2_kg.4__2286__AT2G41490.1 1467 0.0
> Ahg938693 jgi|Araly1|938693|scaffold_502884.1
Length=1321
Score = 2091 bits (1132), Expect = 0.0
Identities = 1262/1324 (95%), Gaps = 12/1324 (1%)
Strand=Plus/Plus
Query 45 TAGCCAACGGATCCGCCATGACTGCTCGTAAGAGAACTCCTTCAGTGTCCAATTCGGAG- 103
||||||||||||||| |||| | |||||||||||| || ||||||| | ||||||| |
Sbjct 4 TAGCCAACGGATCCGTCATGGCAGCTCGTAAGAGAGCTTCTTCAGTCACTAATTCGGCGA 63
Query 104 AAACTAGCTCTACCTGAACCTGCATCTTCCCCGACGGTTCAGAAGACCTCT-GTTTCCGG 162
|||| ||||||| |||||| ||||| |||||||||| | ||||| || | ||||||||
Sbjct 64 AAAC-AGCTCTATCTGAACAGGCATCGTCCCCGACGGAGCTGAAGA-CTGTAGTTTCCGG 121
Query 163 AGAGGATTTCCAG-CTCGCGCCGCCGAAATTGGGCGTGAT-TTTCGTGATCTCTTCGCTT 220
|||||||||| | ||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 122 CGAGGATTTCC-GTCTCGCGCCGCCCAAATTGGGCGTGATCTTT-GTGATCTCTTCGCTT 179
Query 221 CTGTGTTCGCTTTATCTTTACCTTCTCTGTTTCCACTACAATGTTGACAATGAGCTCAAG 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTGTGTTCGCTTTATCTTTACCTTCTCTGTTTCCACTACAATGTTGACAATGAGCTCAAG 239
Query 281 CGTCCGATCCTCATTAACGCTGGGCTTAGCTTGGTTGGATTCTTTGTCACACTCAAGTTG 340
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 240 CGTCCGATCCTCATTAACGCTGGGCTTAGTTTGGTTGGGTTCTTTGTCACACTCAAATTG 299
Query 341 ATTCCTGTAGCTGCTAGATACGTTCTGAGGCGTAATATGTTTGGTTTTGATATCAACAAA 400
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 300 ATTCCTGTAGCTGCTAGATACGTTCTGAGGCGTAACATGTTTGGTTTTGATATTAACAAA 359
Query 401 AGAGGCACTCCTCAAGGAGAAGTTAGAGTGCCTGAGTCATTGGGAATTGTTGTCGGTATT 460
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 AGAGGCACTCCTCAAGGAGAAGTTAAAGTGCCTGAGTCATTGGGAATTGTTGTCGGTATT 419
Query 461 GTCTTCTTGATAGTGGCGATTGTATTTCAGTTCTTTAATTTCACTGAAGATTCGGTGTGG 520
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 420 GTCTTCTTGATAGTGGCGATAGTGTTTCAGTTCTTTAATTTCACTGAAGATTCGGTGTGG 479
Query 521 CTTGTGGAGTATAATGCAGCACTGGCGTCTATTTGCTTCATGATATTGCTTGGATTTGTA 580
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 CTTGTGGAGTATAATGCAGCACTGGCGTCTATTTGCTTCATGATTTTGCTTGGATTTGTA 539
Query 581 GATGACGTCCTTGATGTGCCTTGGAGAGTGAAACTTCTCTTGCCATCTTTTGCAACCCTT 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATGACGTCCTTGATGTGCCTTGGAGAGTGAAACTTCTCTTGCCATCTTTTGCAACCCTT 599
Query 641 CCACTGTTGATGGCTTATGCTGGACATACAACTATCGTCATACCGAAACCT-TTAGTTTC 699
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 600 CCATTGTTGATGGCTTATGCTGGACATACAACTATCGTCATACCGAAACCTCTT-GTTTC 658
Query 700 TTATATTGGCTTGGAAGTGTTTGATCTAGGACGTATATATAAGTTATATATGGCGCTACT 759
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 659 TTATATTGGCTTGGAAGTGTTTGATCTAGGACGGATATATAAGTTATATATGGCGCTACT 718
Query 760 GGCTGTCTTTTGCACAAATTCTATTAACATTCACGCTGGTTTGAATGGCCTTGAAATCGG 819
||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 719 AGCTGTCTTTTGCACAAATTCTATAAACATTCATGCTGGTTTGAATGGCCTAGAAATCGG 778
Query 820 TCAAACCGTAGTTATTGCAGCTGCTATTCTGATACACAACGTTATGCAAATCGGAGCATC 879
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 779 TCAAACCGTAGTTATTGCAGCTGCTATTCTGATACACAACATTATGCAAATCGGAGTATC 838
Query 880 TGTTGATACTGAGTATCATCAAGCTCATGCCTTCTCAATCTATCTTACTCAGCCATTGAT 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGTTGATACTGAGTATCATCAAGCTCATGCCTTCTCAATCTATCTTACTCAGCCATTGAT 898
Query 940 GGCAACATCCTTGGCAATGCTTGCCTACAATTGGTACCCTTCTGCAGTTTTTGTTGGAGA 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGCAACATCCTTGGCAATGCTTGCCTACAATTGGTACCCTTCTGCAGTTTTTGTTGGAGA 958
Query 1000 CACTTACACAGTCTTTGCTGGAATGACTATGGCAGTTGTTGGCATTCTCGGTCACTTCAG 1059
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CACTTACACAGTCTTTGCCGGAATGACTATGGCAGTTGTTGGCATTCTCGGTCACTTCAG 1018
Query 1060 TGAAACCCTGTTAATCTTTTTTCTTCCTCAAGTGTTGAACTTT-TTACTGTCACTTCCGC 1118
||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 1019 TGAAACCCTCTTAATCTTTTTTCTTCCTCAAGTGTTGAACTTTCTTT-TGTCGCTTCCGC 1077
Query 1119 AGCTTGCTGGCATTGTCAAATGTCCACGACATCGTCTCCCCAAGTATGATCCTGCTACGG 1178
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1078 AGCTTGCTGGCATTGTGAAATGTCCACGACATCGTCTCCCCAAGTTTGATCCTGCTACGG 1137
Query 1179 GACTGTTAACAGGAACAAAAGATGGGACACTCGTGAACGTCTACTTGAGGATTTTTGGTA 1238
| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1138 GGCTATTAACAGGAACAAAAGATGGGACACTCGTGAACGTCTACCTGAGGATTTTTGGTA 1197
Query 1239 GGAAAACAGAAAAGTCTCTATGTATTCATCTTCTTGTTTTCCAGGCTCTTGCTTGCGCAT 1298
||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |
Sbjct 1198 GGAAATCAGAAAAGTCTCTTTGTATCCATCTTCTTGTTTTCCAGGCTCTAGCTTGCGCCT 1257
Query 1299 TTTGTTTCATGCTTAGGCATTTTCTAGCTGGTTGGTACAAATAAATCTCTGCAACATGAA 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTTGTTTCATGCTTAGGCATTTTCTAGCTGGTTGGTACAAATAAATCTCTGCAACATGAA 1317
Query 1359 GAAA 1362
||||
Sbjct 1318 GAAA 1321
> Ahg483226 jgi|Araly1|483226|fgenesh2_kg.4__2286__AT2G41490.1
Length=1467
Score = 1467 bits (794), Expect = 0.0
Identities = 1067/1199 (89%), Gaps = 18/1199 (2%)
Strand=Plus/Plus
Query 157 TTCCGGAGAGGATTTCCAG-CTCGCGCCGCCGAAATTGGGCGTGATTTTCGTGATCTCTT 215
|||||| || || |||| | |||||||||||||||||||| ||||| ||||||||||||
Sbjct 178 TTCCGGTGAAGAATTCC-GTCTCGCGCCGCCGAAATTGGGAGTGATCTTCGTGATCTCTA 236
Query 216 CGCTTCTGTGTTCGCTTTATCTTTACCTTCTCTGTTTCCACTACAATGTTGACAATGAGC 275
| ||||| || ||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 237 CTCTTCTCTGCTCGCTCGATCTATACCTTCTCTGTTTCCACTACAAGGTTGACAATGAGC 296
Query 276 TCAAGCG-TCCGATCCTCATTAACGCTGGGCTTAGCTTGGTTGGATTCTTTGTCACACTC 334
||||||| | |||| || |||||||| ||||||||||||||||| | ||| ||||| |||
Sbjct 297 TCAAGCGAT-CGATTCTAATTAACGCGGGGCTTAGCTTGGTTGGGTCCTTCGTCACTCTC 355
Query 335 AAGTTGATTCCTGTAGCTGCTAGATACGTTCTGAGGCGTAATATGTTTGGTTTTGATATC 394
||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 356 AAGATGATTCCTGTTGCTGCCAGATACGTTCTGAGGCGTAATATGTTTGGTTTTGATATC 415
Query 395 AACAAAAGAGGCACTCCTCAAGGAGA-AGTTAGAGTGCCTGAGTCATTGGGAATTGTTGT 453
|||||||||||||| ||||||||||| | ||| |||||| ||||||||||| ||||||||
Sbjct 416 AACAAAAGAGGCACGCCTCAAGGAGATA-TTAAAGTGCCAGAGTCATTGGGTATTGTTGT 474
Query 454 CGGTATTGTCTTCTTGATAGTGGCGATTGTATTTCAGT-TCTTTAATTTCACTGAAGATT 512
||||||||||||||||| ||||||||| ||||||||| | ||||| |||||||||||||
Sbjct 475 TGGTATTGTCTTCTTGATCGTGGCGATTATATTTCAGTAT-TTTAACTTCACTGAAGATT 533
Query 513 CGG-TGTGGCTTGTGGAGTATAATGCAGCACTGGCGTCTATTTGCTTCATGATATTGCTT 571
| | |||||||||||||||||||||||| | || ||||||||||||||||| ||||||
Sbjct 534 CAAAT-TGGCTTGTGGAGTATAATGCAGCATTAGCATCTATTTGCTTCATGATTTTGCTT 592
Query 572 GGATTTGTAGATGACGTCCTTGATGTGCCTTGGAGAGTGAAA-CTTCTCTTGCCATCTTT 630
|||||||||||||| ||||||||||||||||||||||| ||| ||| || ||||||||||
Sbjct 593 GGATTTGTAGATGATGTCCTTGATGTGCCTTGGAGAGT-AAAGCTTGTCCTGCCATCTTT 651
Query 631 TGCAACCCTTCCACTGTTGATGGCTTATGCTGGACATACAACTATCGTCATACCGAAACC 690
||| ||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 652 TGCTACCCTTCCACTTTTGATGGCTTATGCTGGTCATACAACTATTGTTATACCGAAACC 711
Query 691 TTTAGTTTCTTATATTGGCTTGGAAGTGTTTGATCTAGGACGTATATATAAGTTATATAT 750
| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 712 TCTAGTTGCTTATATTGGCTTGGAAGTGCTTGATCTAGGACGGATATATAAGTTATATAT 771
Query 751 GGCGCTACTGGCTGTCTTTTGCACAAATTCTATTAACATTCACGCTGGTTTGAATGGCCT 810
|| |||||| ||||||||||| ||||| ||||||||||| ||||||||| ||||||||||
Sbjct 772 GGGGCTACTTGCTGTCTTTTGTACAAACTCTATTAACATCCACGCTGGTCTGAATGGCCT 831
Query 811 TGAAATCGGTCAAACCGTAGTTATTGCAGCTGCTATTCTGATACACAACGTTATGCAAAT 870
||||||||||||||| || |||||||| |||||||| |||||||||||||||||||||||
Sbjct 832 TGAAATCGGTCAAACAGTTGTTATTGCCGCTGCTATCCTGATACACAACGTTATGCAAAT 891
Query 871 CGGAGCATCTGTTGATACTGAGTATCATCAAGCTCATGCCTTCTCAATCTATCTTACTCA 930
|||||||||||||||| | |||||||| ||||||||||||||||| || | |||||||||
Sbjct 892 CGGAGCATCTGTTGATCCCGAGTATCACCAAGCTCATGCCTTCTCGATATTTCTTACTCA 951
Query 931 GCCATTGATGGCAACATCCTTGGCAATGCTTGCCTACAATTGGTACCCTTCTGCAGTTTT 990
|| ||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 952 ACCGCTGATGGCCACATCCTTGGCAATGCTTGCTTACAATTGGTATCCTTCTTCAGTTTT 1011
Query 991 TGTTGGAGACACTTACACAGTCTTTGCTGGAATGACTATGGCAGTTGTTGGCATTCTCGG 1050
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1012 TGTTGGAGACACTTACACAGTCTTCGCTGGAATGACTATGGCAGTTGTTGGCATTCTGGG 1071
Query 1051 TCACTTCAGTGAAACCCTGTTAATCTTTTTTCTTCCTCAAGTGT-TGAACTTTTTACTGT 1109
|||||||||||||||||| | |||||||||||||||||||| | |||||||| || |||
Sbjct 1072 TCACTTCAGTGAAACCCTCCTCATCTTTTTTCTTCCTCAAGT-TCTGAACTTTCTATTGT 1130
Query 1110 CACTTCCGCAGCTTGCTGGCATTGTCAAATGTCCACGACATCGTCTCCCCAAG-TATGAT 1168
| ||||| ||||||||||| ||||| |||||||| || ||||||||||| ||| ||||||
Sbjct 1131 CGCTTCCTCAGCTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCC-AAGGTATGAT 1189
Query 1169 CCTGCTACGGGACTGTTAACAGGAACAAAAGATGGGACACTCGTGAACGTCTACTTGAGG 1228
|||||||| ||| | | || || ||||||||||||||||| || || || |||||||||
Sbjct 1190 CCTGCTACCGGATTACTGACCGGCACAAAAGATGGGACACTTGTCAATGTTTACTTGAGG 1249
Query 1229 ATT-TTTGGTAGGAAAACAGAAAAGTCTCTATGTATTCATCTTCTTGTTTTCCAGGCTCT 1287
|| |||||| ||| ||||||||||||| || || |||||||| ||||||||||||||
Sbjct 1250 -TTGTTTGGTCCTAAATCAGAAAAGTCTCTTTGCATCCATCTTCTCGTTTTCCAGGCTCT 1308
Query 1288 TGCTTGCGCATTTTGTTTCATGCTTAGGCATTTTCTAGCTGGTTGGTACAAATAAATCT 1346
|| ||||| || |||||||| ||| | || ||||| ||||||||||| ||||||||||
Sbjct 1309 AGCGTGCGCCTTCTGTTTCATACTTCGACACTTTCTTGCTGGTTGGTATAAATAAATCT 1367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5