BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57230.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486166 jgi|Araly1|486166|fgenesh2_kg.5__2158__AT3G57230.1 1312 0.0
> Ahg486166 jgi|Araly1|486166|fgenesh2_kg.5__2158__AT3G57230.1
Length=822
Score = 1312 bits (710), Expect = 0.0
Identities = 769/797 (96%), Gaps = 5/797 (1%)
Strand=Plus/Plus
Query 197 ATGGGAAGGGGCAAGATCGCGATTAAGAGGATCAATAACTCTACGAGCCGTCAGGTTACG 256
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGGGGAAAGATCGCGATTAAGAGGATCAATAACTCTACGAGCCGTCAGGTTACG 60
Query 257 TTCTCGAAGCGAAGGAATGGATTGTTGAAGAAAGCTAAGGAGCTTGCGATTCTCTGCGAT 316
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTCTAAGCGAAGGAATGGACTGTTGAAGAAAGCTAAGGAGCTTGCGATTCTCTGCGAT 120
Query 317 GCTGAGGTTGGTGTCATCATCTTCTCCAGCACCGGTAGGCTCTACGATTTCTCCAGCTCC 376
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTGAGGTTGGTGTTATCATCTTCTCCAGCACCGGTAGGCTCTACGATTTCTCCAGCTCC 180
Query 377 AGCATGAAATCGGTCATAGAGAGATACAGCGATGCCAAAGGAGAAACCAGTTCAGAAAAT 436
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AGCATGAAATCGGTCATAGAGAGATACAGCGATGCCAAAGGGGAAACCAGTTCAGAAAAT 240
Query 437 GATCCCGCTTCAGAAATTCAGTTCTGGCAAAAGGAGGCTGCGATTCTAAAGCGTCAGCTA 496
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GATCCCGCTTCAGAAATTCAGTTCTGGCAAAAGGAGGCTGCGATTCTAAAGCGACAGCTA 300
Query 497 CATAACTTGCAAGAAAACCACCGGCAAATGATGGGGGAGGAGCTCTCTGGACTAAGTGTA 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATAACTTGCAAGAAAACCACCGGCAAATGATGGGGGAGGAGCTCTCTGGACTAAGTGTA 360
Query 557 GAAGCTTTACAGAATTTGGAAAATCAGCTTGAATTGAGCCTTCGTGGCGTTCGAATGAAA 616
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGAGCTTTACAGAATTTGGAAAATCAGCTTGAATTGAGCCTTCGTGGCGTTCGAATGAAA 420
Query 617 AAGGATCAAATGTTAATCGAAGAAATACAAGTACTTAACCGAGAGGGGAATCTCGTTCAC 676
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 421 AAGGATCAAATGTTAATCGAAGAAATACAAGTACTCAACCGAGAGGGGAATCTCGTGCAC 480
Query 677 CAAGAGAATTTAGACCTCCACAAGAAAGTAAACCTAATGCACCAACAGAACATGGAACTA 736
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 CAAGAGAATTTAGACCTCCACAAGAAAGTAAACCTAATGCACCAACAGAACAAGGAACTA 540
Query 737 CATGAAAAGGTTTCAGAGGTCGAGGGTGTGAAAATCGCAAACAAGAATTCTCTTCTCACA 796
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 541 CATGAAAAGGTTTCAGAGGTTGAGGGTGTGAAAATCACAAACAAGAATTCTCTTCTCACA 600
Query 797 AATGGTCTAGACATGAGAGATACCTCGAACGAACATGTCCATCTTCAGCTCAGCCAACCG 856
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 601 AATGGTCTAGACATGAGAGATAACTCGAGCGAACATGTCCATCTTCAGCTCAGCCAACCG 660
Query 857 CAGCATGATCATGAGACGCATTCAAAAGCTATCCAACTCAACTATTTTTCCTTCATTGCA 916
||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 661 CAGCATGAT---GAGACGCATGCAAAAGCTATCCAACTCAACTATTTTTCTTTCATTGCA 717
Query 917 TAAT-ATA-ATTCGGTGTGCCAACACACTTATGTTGACCTCGTCGGAATCATATCACAAT 974
| || ||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 718 TGATGATATATTCGGTGTGCCGACACACTTATGTTGACCTCATCGGAATCATATCTCAAT 777
Query 975 TCACTGTGTCAGCTTGC 991
| ||||| |||| ||||
Sbjct 778 TAACTGTATCAGTTTGC 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5