BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G57250.1

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935996 jgi|Araly1|935996|scaffold_500187.1                        374    4e-103


> Ahg935996 jgi|Araly1|935996|scaffold_500187.1
Length=374

 Score =  374 bits (202),  Expect = 4e-103
 Identities = 313/367 (85%), Gaps = 6/367 (2%)
 Strand=Plus/Plus

Query  25   TTGAGCGAACAGGAGAAGAAGCAGATGATTAAAGAGATCCAGGAGCAGGCCTATGAGGCG  84
            ||||||||||||||||||||||| ||| |||||||| || || ||||||||||||| || 
Sbjct  1    TTGAGCGAACAGGAGAAGAAGCAAATGCTTAAAGAGCTCGAGAAGCAGGCCTATGAAGCA  60

Query  85   TTGCTATACGCATTTGGCGTGGAAAAGAAGATGATCAG-TGATGATGTGAAGAACCTATT  143
            || || |  || |||||||||||||| ||| ||||| | |||||||||||||||||||||
Sbjct  61   TTACTTTGTGCCTTTGGCGTGGAAAACAAGGTGATC-GATGATGATGTGAAGAACCTATT  119

Query  144  GAACATCGAACAGGAGTCTGCAGAGGAAAAGAGGAAGATGGCGTACGAAGCAACT-CT-G  201
            |||||||||||| |||||||||||||||| ||  |||| |||||| |||||  || || |
Sbjct  120  GAACATCGAACAAGAGTCTGCAGAGGAAAGGAACAAGAAGGCGTATGAAGC--CTTCTTG  177

Query  202  CTTGCCGCCACATTCAGTCATTCCTTGGCAAAAGACCGCGATGGTGTGTTAGCTACGTTG  261
            |||||  | ||| ||| | |||||| |||| ||  ||| |||| | ||||||||| ||||
Sbjct  178  CTTGCAACGACACTCAATTATTCCTCGGCAGAATCCCGTGATGCTATGTTAGCTAGGTTG  237

Query  262  AAGAATCAACTCCATATAACTGATGACTTTCACAGGGAATGCCAGAATCGTGTCAGGAAC  321
            | ||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| |||
Sbjct  238  AGGAATCAACTTCATATAACTGATGGCTTCCATAGGGAATGCCAGAATCGTGTCAGCAAC  297

Query  322  AACATTTTAGTCGTCCAATTGACTGGAGAAGCATCCGGCTCGAATTATGTAGGCGAAACA  381
            ||||||| |||||||||||||||| |||||||||||||||||||  | |||||  |||||
Sbjct  298  AACATTTCAGTCGTCCAATTGACTCGAGAAGCATCCGGCTCGAACAACGTAGGTTAAACA  357

Query  382  GGGTGGA  388
             ||||||
Sbjct  358  AGGTGGA  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15453013545


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5