BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57260.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486168 jgi|Araly1|486168|fgenesh2_kg.5__2160__AT3G57260.1 1543 0.0
Ahg348799 jgi|Araly1|348799|fgenesh1_pg.C_scaffold_5002191 449 2e-125
> Ahg486168 jgi|Araly1|486168|fgenesh2_kg.5__2160__AT3G57260.1
Length=1056
Score = 1543 bits (835), Expect = 0.0
Identities = 991/1065 (93%), Gaps = 15/1065 (1%)
Strand=Plus/Plus
Query 9 TTTCACAGAATCATAGAAAAATCAAGAAAATGTCTGAATCAAGGAGCTTAGCCTCACCAC 68
||||| || |||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1 TTTCAGAGTATCATAGAAAAATCAAGAAAATGTCTGAATCAAGGATCTTAGGATCACCAC 60
Query 69 CAATG-TTGATGATTCTTCTCAGCCTTGTAATAGCTTCCTTCTTCAACCAC-ACAGCTGG 126
||||| || ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||
Sbjct 61 CAATGCTT-ATGATTCTTCTCAGCATTGTGATAGCTTCCTTCTTCAA-CACAACAGCTGG 118
Query 127 ACAAATCGGAGTATGCTACGGGATGCTAGGCGATACCTTGCCAAGTCCATCGGACGTTGT 186
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 119 ACAAATCGGAGTATGCTACGGGATGCTAGGCGAAACATTGCCAAGTCCATCAGACGTTGT 178
Query 187 GGCTCTTTACAA-ACAACAAAACATCCAGCGAATGCGGCTCTACGGCCCTGACCCAGGCG 245
|||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||| ||
Sbjct 179 GGCTCTTTACAAGA-AACAGAACATTCAGCGAATGCGGCTCTACGGCCCTGACCCAGACG 237
Query 246 CTCTTGCCGCTCTCCGTGGCTCTGACATCGAGCTCATCCTCGACGTTCCCAGTTCAGATC 305
|||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct 238 CTCTTGCCGCTCTCCGTGACTCTAACATAGAGCTCATCCTCGACGTTCCCAGTTCAGATC 297
Query 306 TTGAACGTCTCGCCTCCAGTCAAACGGAGGCCGACAAGTGGGTTCAAGAAAACGTTCAGA 365
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTGAACGTCTCGCCTCCAGCCAAACGGAGGCCGACAAGTGGGTTCAAGAAAACGTTCAGA 357
Query 366 GCTACAGAGATGGTGTCAGATTCCGGTACATCAACGTTGGAAATGAGGTGAAACCCTCAG 425
|||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 358 GCTACACCGACGGTGTCAGATTCCGGTACATCAACGTCGGAAATGAGGTGAAACCCTCAG 417
Query 426 TTGGGGGGT-TTCTCTTACAAGCAATGCAGAACATCGAGAACGCGGTTTCTGGAGCAGGG 484
| |||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 418 CT-GGGGGTGTTCTCTTACAAGCAATGCAAAACATCGAGAAAGCAGTTTCTGGAGCAGGG 476
Query 485 CTTGAAGTCAAGGTCTCAACAGCTATAGCCACTGACACCACCACTGATACGTCTCCTCCG 544
|||| |||||||||||| || |||||||||||||||||||| || ||||| | |||||||
Sbjct 477 CTTGGAGTCAAGGTCTCTACGGCTATAGCCACTGACACCACTACAGATACATTTCCTCCG 536
Query 545 TCTCAAGGAAGGTTCAGGGATGAGTATAAGAGCTTTCTCGAACCAGTGATAGGTTTCTTG 604
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TCTCAGGGAAGGTTCACGGATGAGTATAAGAGCTTTCTCGAACCAGTGATAGGTTTCTTG 596
Query 605 GCAAGCAAGCAATCTCCCTTGCTCGTGAATCTCTACCCTTACTTCAGCTACATGGGAGAC 664
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 597 ATGAGCAAGCAATCTCCTTTGCTCGTGAATCTCTATCCTTACTTCAGCTACATGGGAGAC 656
Query 665 ACGGCCAACATCCATCTAGACTACGCTCTGTTCACCGCCCAGTCCACTGTTGATAACGAT 724
|||||||| ||| |||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 657 ACGGCCAAGGTCCCTCTAGACTACGCTCTGTTCACCGCTCAGTCCACTGTTGCTGACGAT 716
Query 725 CCAGGGTACTCATACCAAAACCTATTCGACGCAAATCTCGACTCGGTTTATGCAGCATTG 784
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 717 CC---GTACTCATACCAAAACCTATTTGACGCAAATCTCGACTCGGTTTATGCAGCATTG 773
Query 785 GAGAAATCAGGG-GGCGGATCGTTGGAAATCGTGGTGTCGGAGACCGGTTGGCCCACAGA 843
|||||||| ||| || |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 774 GAGAAATC-GGGTGGAGGATCGTTAGAAATCGTGGTGTCGGAGAGCGGTTGGCCCACAGA 832
Query 844 GGGAGCAGTCGGGACGAGTGTGGAAAACGCAAAGACTTATGTTAACAATTTGATACAACA 903
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GGGAGGAGTCGGGACGAGTGTGGAAAACGCAAAGACTTATGTTAACAATTTGATACAACA 892
Query 904 TGTGAAGAATGGATCACCGAGAAGGCCAGGGAAAGCTATAGAGACTTATATATTCGCTAT 963
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 893 TGTGAAGAATGGATCACCGAGAAGGCCAGGGAAAGCTATAGAAACTTATATATTCGCTAT 952
Query 964 G-TTCGATGAGAATAAGAAGGAACCAACGTATGAGAAGTTTTGGGGACTGTTTCATCCAG 1022
| || |||||||||||||||||||| ||| |||||||||||||||||| |||||||| |
Sbjct 953 GCTT-GATGAGAATAAGAAGGAACCTGCGTTTGAGAAGTTTTGGGGACTTTTTCATCCGG 1011
Query 1023 ATCGACAGTCTAAGTATGAAGTTAATTTCAACTAATCCTTAGAGA 1067
|||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 1012 ATCGACAGCCTAAGTATGAAGTTAATTTCAACTAATCTTTGGAGA 1056
> Ahg348799 jgi|Araly1|348799|fgenesh1_pg.C_scaffold_5002191
Length=960
Score = 449 bits (243), Expect = 2e-125
Identities = 757/995 (76%), Gaps = 76/995 (8%)
Strand=Plus/Plus
Query 101 GCTTCCTTCTTCAACCAC-ACAGCTGGACAAATCGGAGTATGCTACGGGATGCTA-GGCG 158
|||||||||||| | ||| ||| ||| ||||||||||| |||||||||| | | ||
Sbjct 4 GCTTCCTTCTTCGA-CACGGCAGTTGGGCAAATCGGAGTGTGCTACGGGA-GAAATGGAA 61
Query 159 A-TACCTTGCCAAGTCCATCGGACGTTGTGGCTCTTTACAAACAACAAAACATCCAGCGA 217
| ||| ||| | | ||||| || |||||||||||| |||||| ||||||| |||
Sbjct 62 ACAACC-TGCGTCCTGCGTCGGAAGTCGTGGCTCTTTACCAACAACGGAACATCCGGCGG 120
Query 218 ATGCGGCTCTACGG-CCCTGACCCAGGCG-CTCTTGCCGCTCTCCGTGGCTCTGACATCG 275
|||||||| ||||| ||| | ||||| | |||| ||||||||| ||||| | ||||
Sbjct 121 ATGCGGCTGTACGGTCCC--AACCAGGAGACTCTCAACGCTCTCCGCGGCTCCAATATCG 178
Query 276 AGCTCATCCTCGACGTTCCCAGTTCAGATCTTGAACGTCTCGCCTCCAGTCAAACGGAGG 335
||||| | ||||| ||||| | | ||||| | ||| | || ||||| ||| |||| |
Sbjct 179 AGCTCGTGCTCGATGTTCCAAACCCTGATCTCCAGCGTATTGCTTCCAGCCAAGCGGAAG 238
Query 336 CCGACAAGTGGGTTCAAG-AA-AACGTTCAG-AGCTACAG-AGATGGTGTCAGATTCCGG 391
|||||| ||||| || || || |||| || | | ||| | | | ||||||||||||||
Sbjct 239 CCGACACGTGGG-TC-AGCAACAACG-TCCGTAACTA-TGCAAACGGTGTCAGATTCCGC 294
Query 392 TACATCAAC-GTTGGAAATGAGGTGA-AACCCTCAG---TTG--G-GGGGTTTCTCTTAC 443
|||||| | || || || ||||| | ||||||||| | | | ||||| || | |
Sbjct 295 TACATC-TCTGTCGGGAACGAGGT-ACAACCCTCAGACCAAGCCGCGAGGTTTGTCCTCC 352
Query 444 AAGCAATGCAGAACATCGAGA-ACGCGGTTTCTGGAGCAGGGCT-TGAAGTCAAGGTCTC 501
|| ||||||||||| |||| | || ||||| | | | || | | ||||||||||
Sbjct 353 CCGCGATGCAGAACATAGAGAGA-GCAGTTTC---A--A-GCCTCGGGA-TCAAGGTCTC 404
Query 502 AACAGCTATAGCCACTGACACCACCACTGATAC--GTCTCCTCCGTCTCAA--GGAAGGT 557
|| ||||||| ||| || | | | | | || ||| ||| |||| || | ||
Sbjct 405 GACGGCTATAGACAC---CA-GAGGAAT-TTCCGGGTTTCCACCG--TCAAGTGGGACGT 457
Query 558 TCAGGGATGAGTATAAGAGCTTTCTCGAACCAGTGATAGGTTTCTTGGCAAGCAAGCAAT 617
||| || | || || |||| ||| ||| ||||||||||||||||| ||||||||||
Sbjct 458 TCACACCGGAATTTAGGAACTTTATCGCACCGGTGATAGGTTTCTTGGCGAGCAAGCAAT 517
Query 618 CTCCCT-TGCTCGTGAATCTCTACCCTTACTTCAGCTACATGGGAGACACG-GCCAACAT 675
|| ||| ||||||||||||||||||||||||||||||| | ||| ||| | | | |||
Sbjct 518 CT-CCTCTGCTCGTGAATCTCTACCCTTACTTCAGCTATACAGGAAACATGAGAGA-CAT 575
Query 676 CCATCTAGACTACGCTCTGTTCACCGC-CCAGTCCACTGTTGAT-AACGATCC-AGGGTA 732
|| | |||||||| ||||||||||||| ||| |||||||| | | || || | | |
Sbjct 576 CCGTTTAGACTACACTCTGTTCACCGCACCA-TCCACTGTAG-TCAATGA-CGGACAAAA 632
Query 733 CTCA-TACCAAAACCTATTCGACGCAAATCTC-GACTCGGTTTATGCAGCATTGGAGAAA 790
| || |||| ||| || ||| | |||| ||| ||| | ||||| ||| |||| ||||||
Sbjct 633 C-CAATACCGAAATCTCTTCTATGCAA-TCTTAGACACTGTTTACGCATCATTAGAGAAA 690
Query 791 TCAGGGGGCGGATC-GTTGGAAATCGTGGTGTCGGAGACCGGTTGGCCCACAGAGGGAGC 849
| || || ||||| || ||| ||||||||||| |||| |||||||| |||| ||||
Sbjct 691 GCTGGAGGTGGATCAGT-GGAGATCGTGGTGTCCGAGAGTGGTTGGCCGACAGCTGGAGG 749
Query 850 AGTCGGGACGAGTGTGGAAAACGCAAAGACTTATGTTAACAATTTGATACAA-CATGTGA 908
|| || |||||||||||| || || | ||||||||| ||||||||||||||| | |||||
Sbjct 750 AGCCGCGACGAGTGTGGAGAATGCGAGGACTTATGTGAACAATTTGATACAAAC-TGTGA 808
Query 909 AGAATGGATCACCGAGAAGGCCAGGGAAAGCTATAGAGACTTATATATTCGCTATGTTCG 968
| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 809 AAAATGGATCTCCGAGAAGGCCAGGGAGAGCTATAGAGACTTATATATTTGCTATGTTCG 868
Query 969 ATGAGAAT---AAG-AAGGAACCAACGTAT-GAGAAGTTTTGGGGACTGTTTCATCCAGA 1023
|||||||| ||| |||| || | | || ||||||||||||||||| |||| ||| ||
Sbjct 869 ATGAGAATTTGAAGCAAGGTCCCGA-G-ATTGAGAAGTTTTGGGGACTTTTTCTTCC-GA 925
Query 1024 -TCGACAGTCTAAGTATGAAGTTAATTTCAACTAA 1057
|| |||| ||||||||| || ||||||||||||
Sbjct 926 ATCTACAGCCTAAGTATGGTGTCAATTTCAACTAA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5