BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57270.1
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486169 jgi|Araly1|486169|fgenesh2_kg.5__2161__AT3G57270.1 1535 0.0
> Ahg486169 jgi|Araly1|486169|fgenesh2_kg.5__2161__AT3G57270.1
Length=1079
Score = 1535 bits (831), Expect = 0.0
Identities = 1002/1085 (92%), Gaps = 9/1085 (1%)
Strand=Plus/Plus
Query 48 CATCTCTTTCTTCACCTAACGACGATGGATCTCCGATTCTTGGCGTCCTTGACCCTTCTT 107
|||||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 1 CATCTCTTTCTTAACCT-A--ACGATGGATCTCCGATTCTTGGCGTCCTTGACCTTTCTT 57
Query 108 CTCGGTCTATTCTTCGTCAATACAAATCCAACAGGTGGACAAGTCGGCGTTTGCTATGGA 167
|||||||||||||||| |||||||| |||| ||| | |||||||||| |||||||| |||
Sbjct 58 CTCGGTCTATTCTTCGCCAATACAATTCCAGCAGTTCGACAAGTCGGGGTTTGCTACGGA 117
Query 168 AGAAACGGCAACAACCTCCCTTCACCAGCAGAAACCATTGCGCTCTTCAAACAGAAAAAC 227
||||||||| ||||||||||||| | ||||||||| | | ||||||||| |||| ||||
Sbjct 118 AGAAACGGCGACAACCTCCCTTCGGCGGCAGAAACCGTCGAGCTCTTCAAGCAGAGAAAC 177
Query 228 ATCCAACGAGTTAGGCTATACAGTCCGGACCACGACGTTCTAGCCGCCCTACGTGGCTCC 287
|||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||
Sbjct 178 ATCCGACGAGTTAGGCTATACACTCCAGACCACGACGTTCTAGACGCCCTACGTGGCTCC 237
Query 288 AACATCGAGGTAACGCTGGGTCTTCCCAACTCTTACCTACAGAGCGTGGCCTCGAGCCAA 347
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 238 AACATCGAGGTAACGCTGGGCCTTCCCAACTCTTATCTACAGAGCGTGGCATCGAGCCAA 297
Query 348 TCACAAGCTAACGCGTGGGTACAAACCTACGTCATGAACTACGCGAATGGCGTCAGGTTC 407
|||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||| ||||
Sbjct 298 TCACAAGCTAACACGTGGGTCCAAACCAACGTCATGAACTACGTGAATGGCGTCAAGTTC 357
Query 408 CGTTACATATCTGTTGGGAATGAAGTTAAAATCTCCGACTCTTACGCACAGTTCCTAGTC 467
|||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||
Sbjct 358 CGTTACATATCTGTTGGGAACGAAGTTAAGATCTCTGACTCTTATGCACAGTTCCTAGTC 417
Query 468 CCTGCCATGGA-AAACATTGACCGGGCGGTTTTAGCAGCCGGACTCGGTGGTCGTATCAA 526
|| ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 418 CCGGCCAT-GATAAACATTGACCGGGCGGTTTTAGCAGCCGGACTAGGTGGTCGTATCAA 476
Query 527 GGTATCCACATCGGTAGACATGGGAGTGCTCCGAGAGTCTTATCCACCATCGAAAGGTTC 586
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 477 GGTATCCACGGCGGTAGACATGGGAGTGCTCGGAGAGTCTTATCCACCATCGAAAGGTTC 536
Query 587 GTTTAGGGGAGATGTTATGGTGGTAATGGAACCAATCATACGTTTCTTGGTAAGCAAGAA 646
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTTTAGGGGAGACGTTATGGTGGTAATGGAACCAATCATACGTTTCTTGGTAAGCAAGAA 596
Query 647 CTCTCCTTTACTCTTAAACCTCTACACTTACTTCAGCTACGCGGGCAATGTAGGCCAAAT 706
||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 597 CTCTCCTTTACTCTTAAACCTCTACACTTACTTCAGCTACGCGGGAAATAAAGATCAAAT 656
Query 707 CCGGCTCGATTACGCTCTCTTCACGGCTCCTTCAGGAATCGTTTCGGACCCTCCTAGATC 766
|| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 657 ACGACTCGATTACGCTCTCTTCACGGCTCCTCCAGGAATCGTTTTGGACCCTCCGAGATC 716
Query 767 TTACCAAAACCTATTTGATGCGATGCTCGATGCGATGTACTCGGCTCTAGAGAAATCGGG 826
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct 717 TTACCAAAACCTATTTGATGCGATGCTCGATGCGATGCACTCGGCTCTAGAGAGATCCGG 776
Query 827 TGGCGCATCATTGGAAATAGTTGTGGCGGAGACTGGATGGCCAACGGGAGGAGGAACCGA 886
||||| ||| |||||| |||||||||| ||||| |||||||||||||||||||||| |||
Sbjct 777 TGGCGGATCGTTGGAAGTAGTTGTGGCAGAGACCGGATGGCCAACGGGAGGAGGAATCGA 836
Query 887 TACAAACATAGAGAATGCGAGAATTTATAACAATAATTTGATTAAGCATGTGAAGAATGG 946
|||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 837 TACAAACATACAGAATGCGGGAATTTATAACAATAATTTGATTAATCATGTGAAGAATGG 896
Query 947 GACACCGAAGAGACCAGGGAAAGAAATCGAGACATATTTATTTGCCATTTATGACGAGAA 1006
||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |
Sbjct 897 GACACCGAAGAGACCGGGGAGAGAAATCGAGACATATTTATTTGCCATGTATGACGAGGA 956
Query 1007 TCAA-AAGCCGACTCCTCCTTATGTTGAGAAGTTTTGGGGATTGTTCTATCCCAACAAGC 1065
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 957 T-AAGAAGCCGACTCCTCCTTATGTTGAGAAGTTTTGGGGATTGTTCTATCCGAACAAGC 1015
Query 1066 AGCCTAAGTATGATATTAACTTTTATTGAGCCGAACCAATATTCTATC-AAGGGAATGGT 1124
|||||||||| | |||||||||| |||| ||||||| |||||||| | |||| ||||||
Sbjct 1016 AGCCTAAGTACGCTATTAACTTTGGTTGAACCGAACCGATATTCTAACCAAGG-AATGGT 1074
Query 1125 ATATT 1129
|||||
Sbjct 1075 ATATT 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44527567056
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5