BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G57270.1 Length=1193 Score E Sequences producing significant alignments: (Bits) Value Ahg486169 jgi|Araly1|486169|fgenesh2_kg.5__2161__AT3G57270.1 1535 0.0 > Ahg486169 jgi|Araly1|486169|fgenesh2_kg.5__2161__AT3G57270.1 Length=1079 Score = 1535 bits (831), Expect = 0.0 Identities = 1002/1085 (92%), Gaps = 9/1085 (1%) Strand=Plus/Plus Query 48 CATCTCTTTCTTCACCTAACGACGATGGATCTCCGATTCTTGGCGTCCTTGACCCTTCTT 107 |||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||| Sbjct 1 CATCTCTTTCTTAACCT-A--ACGATGGATCTCCGATTCTTGGCGTCCTTGACCTTTCTT 57 Query 108 CTCGGTCTATTCTTCGTCAATACAAATCCAACAGGTGGACAAGTCGGCGTTTGCTATGGA 167 |||||||||||||||| |||||||| |||| ||| | |||||||||| |||||||| ||| Sbjct 58 CTCGGTCTATTCTTCGCCAATACAATTCCAGCAGTTCGACAAGTCGGGGTTTGCTACGGA 117 Query 168 AGAAACGGCAACAACCTCCCTTCACCAGCAGAAACCATTGCGCTCTTCAAACAGAAAAAC 227 ||||||||| ||||||||||||| | ||||||||| | | ||||||||| |||| |||| Sbjct 118 AGAAACGGCGACAACCTCCCTTCGGCGGCAGAAACCGTCGAGCTCTTCAAGCAGAGAAAC 177 Query 228 ATCCAACGAGTTAGGCTATACAGTCCGGACCACGACGTTCTAGCCGCCCTACGTGGCTCC 287 |||| ||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| Sbjct 178 ATCCGACGAGTTAGGCTATACACTCCAGACCACGACGTTCTAGACGCCCTACGTGGCTCC 237 Query 288 AACATCGAGGTAACGCTGGGTCTTCCCAACTCTTACCTACAGAGCGTGGCCTCGAGCCAA 347 |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 238 AACATCGAGGTAACGCTGGGCCTTCCCAACTCTTATCTACAGAGCGTGGCATCGAGCCAA 297 Query 348 TCACAAGCTAACGCGTGGGTACAAACCTACGTCATGAACTACGCGAATGGCGTCAGGTTC 407 |||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||| |||| Sbjct 298 TCACAAGCTAACACGTGGGTCCAAACCAACGTCATGAACTACGTGAATGGCGTCAAGTTC 357 Query 408 CGTTACATATCTGTTGGGAATGAAGTTAAAATCTCCGACTCTTACGCACAGTTCCTAGTC 467 |||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||| Sbjct 358 CGTTACATATCTGTTGGGAACGAAGTTAAGATCTCTGACTCTTATGCACAGTTCCTAGTC 417 Query 468 CCTGCCATGGA-AAACATTGACCGGGCGGTTTTAGCAGCCGGACTCGGTGGTCGTATCAA 526 || ||||| || ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 418 CCGGCCAT-GATAAACATTGACCGGGCGGTTTTAGCAGCCGGACTAGGTGGTCGTATCAA 476 Query 527 GGTATCCACATCGGTAGACATGGGAGTGCTCCGAGAGTCTTATCCACCATCGAAAGGTTC 586 ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 477 GGTATCCACGGCGGTAGACATGGGAGTGCTCGGAGAGTCTTATCCACCATCGAAAGGTTC 536 Query 587 GTTTAGGGGAGATGTTATGGTGGTAATGGAACCAATCATACGTTTCTTGGTAAGCAAGAA 646 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GTTTAGGGGAGACGTTATGGTGGTAATGGAACCAATCATACGTTTCTTGGTAAGCAAGAA 596 Query 647 CTCTCCTTTACTCTTAAACCTCTACACTTACTTCAGCTACGCGGGCAATGTAGGCCAAAT 706 ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| Sbjct 597 CTCTCCTTTACTCTTAAACCTCTACACTTACTTCAGCTACGCGGGAAATAAAGATCAAAT 656 Query 707 CCGGCTCGATTACGCTCTCTTCACGGCTCCTTCAGGAATCGTTTCGGACCCTCCTAGATC 766 || ||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| Sbjct 657 ACGACTCGATTACGCTCTCTTCACGGCTCCTCCAGGAATCGTTTTGGACCCTCCGAGATC 716 Query 767 TTACCAAAACCTATTTGATGCGATGCTCGATGCGATGTACTCGGCTCTAGAGAAATCGGG 826 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || Sbjct 717 TTACCAAAACCTATTTGATGCGATGCTCGATGCGATGCACTCGGCTCTAGAGAGATCCGG 776 Query 827 TGGCGCATCATTGGAAATAGTTGTGGCGGAGACTGGATGGCCAACGGGAGGAGGAACCGA 886 ||||| ||| |||||| |||||||||| ||||| |||||||||||||||||||||| ||| Sbjct 777 TGGCGGATCGTTGGAAGTAGTTGTGGCAGAGACCGGATGGCCAACGGGAGGAGGAATCGA 836 Query 887 TACAAACATAGAGAATGCGAGAATTTATAACAATAATTTGATTAAGCATGTGAAGAATGG 946 |||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 837 TACAAACATACAGAATGCGGGAATTTATAACAATAATTTGATTAATCATGTGAAGAATGG 896 Query 947 GACACCGAAGAGACCAGGGAAAGAAATCGAGACATATTTATTTGCCATTTATGACGAGAA 1006 ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| | Sbjct 897 GACACCGAAGAGACCGGGGAGAGAAATCGAGACATATTTATTTGCCATGTATGACGAGGA 956 Query 1007 TCAA-AAGCCGACTCCTCCTTATGTTGAGAAGTTTTGGGGATTGTTCTATCCCAACAAGC 1065 | || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 957 T-AAGAAGCCGACTCCTCCTTATGTTGAGAAGTTTTGGGGATTGTTCTATCCGAACAAGC 1015 Query 1066 AGCCTAAGTATGATATTAACTTTTATTGAGCCGAACCAATATTCTATC-AAGGGAATGGT 1124 |||||||||| | |||||||||| |||| ||||||| |||||||| | |||| |||||| Sbjct 1016 AGCCTAAGTACGCTATTAACTTTGGTTGAACCGAACCGATATTCTAACCAAGG-AATGGT 1074 Query 1125 ATATT 1129 ||||| Sbjct 1075 ATATT 1079 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44527567056 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5