BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57280.1
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324236 jgi|Araly1|324236|fgenesh1_pm.C_scaffold_5001780 750 0.0
Ahg898671 jgi|Araly1|898671|Al_scaffold_0005_2637 255 3e-67
> Ahg324236 jgi|Araly1|324236|fgenesh1_pm.C_scaffold_5001780
Length=720
Score = 750 bits (406), Expect = 0.0
Identities = 468/498 (94%), Gaps = 4/498 (1%)
Strand=Plus/Plus
Query 181 ATGGCTTCACAAATCTCTCAGCTTGCTTGTTTCTCATCCACCAATCGC-CAATTTCACTT 239
|||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1 ATGGCTACACAAATCTCTCAGCTTGCTTGTTTCTCATCCACCAATC-CTCAATTTCACTT 59
Query 240 CCAAAGCCGATCGTTTCCATGCCCTATGATTCGTCCCCAGTCTTTTGTAGTTAAAAGTGT 299
||| |||||||| ||| ||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 60 CCAGAGCCGATCATTTACATGCCCTAGGATTCGTCCCCAGTCTTTTGTAGTTAGAAGCGT 119
Query 300 TGATGGGAATAGCTCTGAAACACCAGCTTCTCTAAGCTATACAGCTGAGGTTTCAAAACC 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 TGATGGGAATAGCTCTGAAACACCGGCTTCTCTAAGCTATACAGCTGAGGTTTCAAAACC 179
Query 360 TGTTGTTGAGAAAACATCCAAACCGTATTCCACTGTTGATGAAACTGCTACCAATAAAGA 419
| |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 180 TATTGTTGAGAAAACATCGAAACCGTATTCCACTGTGGATGAAACTGCTACTGATAAAGA 239
Query 420 GAGCATCACAGAGCCAGTAGAGGAAGATGTTGCCACACAACCAATAAGAGCAGCAAAGAT 479
| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 240 TATTATCACAGAGCCAGTAGAAGAACATGTTGCCACACAACCAATAAGAGCAGCAAAGAT 299
Query 480 CCACGACTTCTGTTTCGGCATTCCTTATGGTGGTCTCGTTG-TGAGTGGAGGGCTTCTTG 538
|||||| |||||||| |||||||||||||||||||||| || | ||||||||||||||||
Sbjct 300 CCACGATTTCTGTTTTGGCATTCCTTATGGTGGTCTCG-TGATCAGTGGAGGGCTTCTTG 358
Query 539 GTTTTGCGTTTTCACGAAATCTTACAAGTTTAAGTACTGGTGTCCTCTATGGTGGTGGCC 598
| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 359 GATTTGCGTTTTCACGAAATCTTACGAGCTTAAGTACTGGTGTCCTCTATGGTGGTGGCC 418
Query 599 TTCTAGCCCTTAGTACACTGAGCTTAAAGATTTGGCGAGAGGGAAAATCTAGTTTCCCTT 658
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 TTCTAGCCCTTAGTACATTGAGCTTAAAGATTTGGCGACAGGGAAAATCTAGTTTCCCTT 478
Query 659 ATATACTAGGACAAGCAG 676
||||||||||||||||||
Sbjct 479 ATATACTAGGACAAGCAG 496
Score = 327 bits (177), Expect = 7e-89
Identities = 185/189 (98%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 673 GCAGTGCTTTCAGCTGTCGTCTTCTGGAAGAACTTCACAGCTTATTCGATGACTAAGAAG 732
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GCAGTTCTGTCAGCTGTCGTCTTCTGGAAGAACTTCACAGCTTATTCGATGACTAAGAAG 591
Query 733 CTGTTTCCGGCCGGGGTTTTTGCTGTCATCAGTGCTTGCATGTTGTGTTTCTATTCATAT 792
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CTGTTTCCGGCCGGGCTTTTTGCTGTCATCAGTGCTTGCATGTTGTGTTTCTATTCATAT 651
Query 793 GTGGTGCTCTCTGGAGGAAACCCACCTCCAAAGAAATTGAAACCATCTGCGACTAGTCCT 852
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 652 GTGGTGCTCTCTGGAGGAAACCCACCTCCAAAGAAATTGAAACCATCTGCTACTAGTCCT 711
Query 853 TCATACTGA 861
|||||||||
Sbjct 712 TCATACTGA 720
> Ahg898671 jgi|Araly1|898671|Al_scaffold_0005_2637
Length=315
Score = 255 bits (138), Expect = 3e-67
Identities = 155/163 (95%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 277 CAGTCTTTTGTAGTTAAAAGTGTTGATGGGAATAGCTCTGAAACACCAGCTTCTCTAAGC 336
|||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 154 CAGTCTTTTGTAGTTAGAAGCGTTGATGGGAATAGCTCTGAAACACCGGCTTCTCTAAGC 213
Query 337 TATACAGCTGAGGTTTCAAAACCTGTTGTTGAGAAAACATCCAAACCGTATTCCACTGTT 396
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 214 TATACAGCTGAGGTTTCAAAACCTATTGTTGAGAAAACATC-AAACCGTATTCCACTGTG 272
Query 397 GATGAAACTGCTACCAATAAAGAGAGCATCACAGAGCCAGTAG 439
||||||||||||||||||||||||| ||||||||||||||||
Sbjct 273 GATGAAACTGCTACCAATAAAGAGATTATCACAGAGCCAGTAG 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5