BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57290.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486171 jgi|Araly1|486171|fgenesh2_kg.5__2163__AT3G57290.1 2422 0.0
> Ahg486171 jgi|Araly1|486171|fgenesh2_kg.5__2163__AT3G57290.1
Length=1476
Score = 2422 bits (1311), Expect = 0.0
Identities = 1423/1478 (96%), Gaps = 3/1478 (0%)
Strand=Plus/Plus
Query 19 TTTTTACCTCGTCGTCTCTGAAACT-TCATCTCTGCCGTCTTAAGAAGATTTTGCCAGTG 77
|||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 1 TTTTTACCTCATCGTCTCTGAAACTCCCATCTCTGCCGTCTAAAGAAGATTTTGCCACT- 59
Query 78 CGGGAAGCGGCGGAGATTGAGAGATTAGCGACGATGGAGGAAAGCAAACAGAACTATGAC 137
||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||||
Sbjct 60 -GGGAAGCGGCGGAGATTTAGAGATTTGCGACGATGGAGGAAATCAAAGAGAACTATGAC 118
Query 138 CTGACGCCACTAATAGCGCCTAACCTGGACAGACACTTGGTGTTTCCTATATTCGAGTTC 197
|||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 119 CTGACGCCACGAGTAGCGCCTAACCTGGACAGACACTTGGTGTTTCCTATACTCGAGTTC 178
Query 198 CTTCAAGAGCGTCAGCTTTACCCTGATGAGCAGATCCTGAAGTCTAAAATCCAGCTTTTG 257
||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 179 CTTCAAGAGCGTCAGCTTTACCCTGATGAGCAGATCCTGAAGTTTAAGATCGAGCTTTTG 238
Query 258 AACCAGACGAACATGGTTGATTACGCCATGGATATTCACAAGAGTCTCTACCACACTGAA 317
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 239 AACCAGACAAACATGGTTGATTACGCCATGGATATTCACAAGAGCCTCTACCACACTGAA 298
Query 318 GACGCTCCTCAAGAAATGGTGGAGAGAAGAACAGAGGTTGTCGCTAGGCTCAAATCTTTG 377
|||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 299 GACGCTCCTCAAGATATGGTGGAGAGAAGAGCAGAGGTTGTGGCTAGGCTCAAATCTTTG 358
Query 378 GAGGAGGCTGCTGCACCACTCGTGTCTTTTCTTTTGAACCCTAACGCTGTGCAGGAGCTA 437
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAGGAGGCTGCGGCTCCACTCGTGTCTTTTCTTTTGAACCCTAACGCTGTGCAGGAGCTA 418
Query 438 AGAGCTGACAAGCAGTACAATCTCCAAATGCTCAAGGAACGCTACCAGATTGGTCCAGAC 497
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 AGAGCTGACAAGCAGTACAATCTCCAGATGCTCAAGGAACGCTACCAGATTGGTCCAGAC 478
Query 498 CAGATTGAGGCTTTGTACCAGTACGCCAAGTTTCAGTTTGAATGTGGCAACTATTCTGGT 557
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 479 CAGATTGAGGCTCTGTACCAGTACGCCAAGTTTCAGTTTGAATGTGGGAACTATACTGGT 538
Query 558 GCTGCTGATTATCTTTACCAGTACAGGACCCTGTGCTCTAACCTTGAGAGGAGTTTGAGT 617
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 539 GCTGCTGATTATCTTTACCAGTACAGGACCCTGTGCTCCAACCTTGAGAGAAGTTTGAGT 598
Query 618 GCCTTGTGGGGAAAGCTCGCATCTGAAATATTGATGCAAAACTGGGATATTGCTCTTGAA 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCCTTGTGGGGAAAGCTCGCATCTGAAATATTGATGCAAAACTGGGATATTGCTCTTGAA 658
Query 678 GAGCTTAACCGTCTCAAAGAGATTATTGACTCAAAGAGTTTTTCATCGCCGTTAAACCAG 737
||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 659 GAGCTCAACCGTCTTAAAGAGATTATTGACTCAAAGAGTTTTTCATCGCCATTAAACCAG 718
Query 738 GTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTGTATATCTTTTTTAACCATGATAAT 797
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 GTGCAGAACAGGATTTGGTTGATGCATTGGGGTCTCTATATCTTTTTTAACCATGATAAT 778
Query 798 GGAAGGACACAGATCATTGATCTTTTTAACCAAGACAAGTATCTGAATGCCATCCAAACT 857
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 GGAAGGACACAGATCATTGATCTTTTTAACCAAGACAAGTATCTGAATGCCATACAAACT 838
Query 858 AGTGCTCCACACTTGCTGCGCTACTTGGCAACTGCTTTCATTGTCAACAAAAGGAGAAGA 917
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGTGCTCCACACTTGCTGCGTTACTTGGCAACTGCTTTCATTGTCAACAAAAGGAGAAGA 898
Query 918 CCACAATTGAAAGAATTCATTAAGGTCATTCAGCAAGAGCACTACTCCTACAAAGATCCA 977
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCTCAATTGAAAGAATTCATTAAGGTCATTCAGCAAGAGCACTACTCCTACAAAGATCCT 958
Query 978 ATTATCGAGTTCCTGGCATGTGTGTTTGTCAATTATGACTTTGATGGGGCTCAAAAGAAG 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATTATCGAGTTCCTGGCATGTGTGTTTGTCAATTATGACTTTGATGGGGCTCAAAAGAAG 1018
Query 1038 ATGAAAGAGTGTGAAGAGGTCATTGTGAATGATCCATTCCTTGGCAAGCGAGTTGAGGAT 1097
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1019 ATGAAAGAGTGTGAAGAGGTCATTGTGAATGATCCATTCCTTGGCAAACGAGTTGAGGAT 1078
Query 1098 GGAAACTTTTCAACTGTACCACTGAGAGATGAATTTCTTGAAAATGCCCGCCTATTCGTC 1157
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1079 GGAAACTTTTCAACAGTACCACTTAGAGATGAATTTCTTGAAAATGCCCGCCTATTTATC 1138
Query 1158 TTTGAAACCTATTGCAAAATTCATCAAAGGATTGACATGGGGGTACTTGCTGAAAAATTG 1217
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1139 TTTGAAACCTACTGCAAAATTCATCAAAGGATTGACATGGGGGTGCTTGCTGAAAAATTG 1198
Query 1218 AATCTGAACTATGAGGAGGCCGAGAGATGGATTGTGAACCTAATCCGCACCTCAAAGCTT 1277
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AACCTGAACTATGAGGAGGCCGAGAGATGGATTGTGAACCTAATCCGCACCTCAAAGCTT 1258
Query 1278 GATGCCAAGATTGATTCTGAGTCAGGAACTGTAATCATGGAGCCTACTCAGCCCAACGTG 1337
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GATGCCAAGATTGATTCCGAGTCAGGAACTGTAATCATGGAGCCTACTCAGCCCAACGTG 1318
Query 1338 CATGAGCAGTTGATAAACCACACCAAAGGCTTATCAGGACGAACATACAAGTTAGTGAAT 1397
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1319 CATGAGCAGTTGATAAACCACACCAAAGGCTTATCAGGACGGACTTACAAGTTAGTGAAT 1378
Query 1398 CAGCTCTTGGAACACACACAGGCGCAAGCAACTCGCTAGTCAAAATTTTGCTGTGGAAGC 1457
|||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
Sbjct 1379 CAGCTCTTGGAACATACACAGGCGCAAGCAACTCGCTAATCAAATTTTTGCTGTGGAAAC 1438
Query 1458 CTTTCCTTGATAAAACTCACCTTCGGTTGACTGGAATT 1495
||||||||||||||||||| ||||| ||||||||||||
Sbjct 1439 CTTTCCTTGATAAAACTCAGCTTCGCTTGACTGGAATT 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5