BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57310.1
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938706 jgi|Araly1|938706|scaffold_502897.1 510 2e-144
> Ahg938706 jgi|Araly1|938706|scaffold_502897.1
Length=353
Score = 510 bits (276), Expect = 2e-144
Identities = 300/312 (96%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1 ATGAAGTTCACGAAATTATTATTCGTGGCATCTGTTATGATCGTCATGTCACCTCTGGCT 60
|||||||||||||||||||| ||| |||||| |||||||||||||||| || ||||||||
Sbjct 21 ATGAAGTTCACGAAATTATTGTTCATGGCATTTGTTATGATCGTCATGACATCTCTGGCT 80
Query 61 CCAACCAGAGCAACTGTGGTTGGAGGTTGGGGTATAGAGGAGAAAGCGGCATGCATCGTG 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CCAACCAGAGCATCTGTGGTTGGAGGTTGGGGTATAGAGGAGAAAGCGGCATGCATCGTG 140
Query 121 ACAAACCTCATGTCATGCCTGCCGGCGATACTCAAAGGAAGTCAGCCACCGGCATATTGT 180
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 141 ACAGACCTCATGTCATGCCTACCGGCGATACTCAAAGGAAGTCAGCCACCGGCATATTGT 200
Query 181 TGCGAGATGCTGAAAGAGCAGCAGTCTTGTCTTTGTGGTTACATAAAGTCTCCAACGTTT 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 201 TGCGAGATGCTGAAAGAGCAGCAGTCTTGTCTTTGTGGTTACATAAAGACTCCAGCGTTT 260
Query 241 GGTCACTATGTCATCCCTCAAAATGCTCACAAACTTCTAGCGGCTTGTGGTATTCTTTAC 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 261 GGTCACTATGTCATCCCTAAAAATGCTCACAAACTTCTAGCGGCTTGTGGTATTCCTTAC 320
Query 301 CCTAAATGTTGA 312
||||||||||||
Sbjct 321 CCTAAATGTTGA 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10988809632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5