BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G57310.1

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg938706 jgi|Araly1|938706|scaffold_502897.1                        510    2e-144


> Ahg938706 jgi|Araly1|938706|scaffold_502897.1
Length=353

 Score =  510 bits (276),  Expect = 2e-144
 Identities = 300/312 (96%), Gaps = 0/312 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGTTCACGAAATTATTATTCGTGGCATCTGTTATGATCGTCATGTCACCTCTGGCT  60
            |||||||||||||||||||| ||| |||||| |||||||||||||||| || ||||||||
Sbjct  21   ATGAAGTTCACGAAATTATTGTTCATGGCATTTGTTATGATCGTCATGACATCTCTGGCT  80

Query  61   CCAACCAGAGCAACTGTGGTTGGAGGTTGGGGTATAGAGGAGAAAGCGGCATGCATCGTG  120
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  81   CCAACCAGAGCATCTGTGGTTGGAGGTTGGGGTATAGAGGAGAAAGCGGCATGCATCGTG  140

Query  121  ACAAACCTCATGTCATGCCTGCCGGCGATACTCAAAGGAAGTCAGCCACCGGCATATTGT  180
            ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  141  ACAGACCTCATGTCATGCCTACCGGCGATACTCAAAGGAAGTCAGCCACCGGCATATTGT  200

Query  181  TGCGAGATGCTGAAAGAGCAGCAGTCTTGTCTTTGTGGTTACATAAAGTCTCCAACGTTT  240
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  201  TGCGAGATGCTGAAAGAGCAGCAGTCTTGTCTTTGTGGTTACATAAAGACTCCAGCGTTT  260

Query  241  GGTCACTATGTCATCCCTCAAAATGCTCACAAACTTCTAGCGGCTTGTGGTATTCTTTAC  300
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  261  GGTCACTATGTCATCCCTAAAAATGCTCACAAACTTCTAGCGGCTTGTGGTATTCCTTAC  320

Query  301  CCTAAATGTTGA  312
            ||||||||||||
Sbjct  321  CCTAAATGTTGA  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10988809632


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5