BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G57310.1 Length=312 Score E Sequences producing significant alignments: (Bits) Value Ahg938706 jgi|Araly1|938706|scaffold_502897.1 510 2e-144 > Ahg938706 jgi|Araly1|938706|scaffold_502897.1 Length=353 Score = 510 bits (276), Expect = 2e-144 Identities = 300/312 (96%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 1 ATGAAGTTCACGAAATTATTATTCGTGGCATCTGTTATGATCGTCATGTCACCTCTGGCT 60 |||||||||||||||||||| ||| |||||| |||||||||||||||| || |||||||| Sbjct 21 ATGAAGTTCACGAAATTATTGTTCATGGCATTTGTTATGATCGTCATGACATCTCTGGCT 80 Query 61 CCAACCAGAGCAACTGTGGTTGGAGGTTGGGGTATAGAGGAGAAAGCGGCATGCATCGTG 120 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 81 CCAACCAGAGCATCTGTGGTTGGAGGTTGGGGTATAGAGGAGAAAGCGGCATGCATCGTG 140 Query 121 ACAAACCTCATGTCATGCCTGCCGGCGATACTCAAAGGAAGTCAGCCACCGGCATATTGT 180 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 141 ACAGACCTCATGTCATGCCTACCGGCGATACTCAAAGGAAGTCAGCCACCGGCATATTGT 200 Query 181 TGCGAGATGCTGAAAGAGCAGCAGTCTTGTCTTTGTGGTTACATAAAGTCTCCAACGTTT 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 201 TGCGAGATGCTGAAAGAGCAGCAGTCTTGTCTTTGTGGTTACATAAAGACTCCAGCGTTT 260 Query 241 GGTCACTATGTCATCCCTCAAAATGCTCACAAACTTCTAGCGGCTTGTGGTATTCTTTAC 300 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 261 GGTCACTATGTCATCCCTAAAAATGCTCACAAACTTCTAGCGGCTTGTGGTATTCCTTAC 320 Query 301 CCTAAATGTTGA 312 |||||||||||| Sbjct 321 CCTAAATGTTGA 332 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10988809632 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5