BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57340.1
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486177 jgi|Araly1|486177|fgenesh2_kg.5__2169__AT3G57340.1 2124 0.0
> Ahg486177 jgi|Araly1|486177|fgenesh2_kg.5__2169__AT3G57340.1
Length=1383
Score = 2124 bits (1150), Expect = 0.0
Identities = 1317/1395 (94%), Gaps = 22/1395 (2%)
Strand=Plus/Plus
Query 22 CCATTAGTCATCTTGTAAATTCTTCGAATCTGAAATCCGATCGGGCTCG-C--TTGTTCT 78
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 2 CCATTAGTCGTCTTGTAAATTCTTCGAATCTGAAATCCGATCGGGCTCGCCGTTTGTTCT 61
Query 79 GATTTCGTGA-GGGT-GAACATGGATGGAAACAAAGACGATGCGTTGAAGTGCTTGAAAA 136
|||||| ||| | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GATTTC-TGATTGCTAGGACATGGATGGAAACAAAGACGATGCGTTGAAGTGCTTGAAAA 120
Query 137 TCTGCAAAAGTGCTATGGAAGCTGGAGATCGACCTCGCGCTTTGAAATTCCTGGCTAAAG 196
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGCAAAAATGCTATGGAAGCTGGAGATCGACCTCGCGCTTTGAAATTCCTGGCTAAAG 180
Query 197 CTCGTCGTCTTGATCCAAATCTCCCGATCGATGATCTCGTATCTGAGCTTAACAACAACA 256
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTCGTCGTCTTGATCCGAATCTCCCGATCGATGATCTCGTATCTGAGCTTAATGACAACA 240
Query 257 AATCAGACGAACCAGGATCTGCAAAATCGCCTGGATCTGCAGCAGCAAAGGATTCTTCC- 315
||||||||||| ||||||||||||||||||||||||||||| | | ||| ||||| ||
Sbjct 241 AATCAGACGAATCAGGATCTGCAAAATCGCCTGGATCTGCAACCGAAAAAGATTC-GCCT 299
Query 316 AATTCTTCAGATCGGCCTTCTTTACGTCAACGTGGATCGTCAACAACGTCATCGTCTTCT 375
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 300 AATTCTTCAGATCGGCCTTCTTTACGCCAACGTGGATCGT------CGTCATCGTCTTCT 353
Query 376 TCGATGTCCTACACTGAAGAACAGATCTCAATCGTGAGAAAGATAAAATCTAAAAAGGAT 435
| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 354 ACCATGTCTTACACTGAAGAACAGATCTCAATCGTGAGAAAGATAAAATCGAAGAAGGAT 413
Query 436 TATTACGAGATCTTAGGTCTTGAATCCAACTGTTCAGTGGATGATGTGAGAAAAGCTTAC 495
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 414 TATTACGAGATCTTAGGTCTTGAATCCAACTGTTCAGTGGATGATGTGAGGAAAGCTTAT 473
Query 496 CGGAAACTCTCATTGAAAGTTCATCCAGATAAGAATCAAGCTCCTGGTTCAGAAGAAGCT 555
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 474 CGGAAACTCTCTTTGAAAGTTCATCCTGATAAGAATCAAGCTCCTGGTTCAGAAGAAGCT 533
Query 556 TTCAAATCCGTCTCCAAGGCATTTCAATGCTTGAGCAATGACGAAGCTAGGAAAAAATAC 615
|||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||
Sbjct 534 TTCAAATCCGTCTCCAAGGCGTTTCAATGCTTAAGCAACGAGGAAGCTAGGAAAAAATAC 593
Query 616 GATGTAAGTGGCTCCGATGAACCAATCTATCAACCACGTCGATCTGCTAGAAGTAATGGA 675
||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 594 GATGTCAGTGGTTCCGATGAACCAATCTATCAGCCACGACGATCTGCGAGAAGTAATGGA 653
Query 676 TTCAATGGTGGATACTATTACGAAGACGAATTCGATCCCAACGAGATTTTCCGAAGCTTC 735
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTCAATGGTGGATACTACTACGAAGACGAATTCGATCCCAACGAGATTTTCCGAAGCTTC 713
Query 736 TTCGGTGGAGGAGGATTCGGTGGTGGAGGAATGCCTCCTGCGACTGCTCAATTCCGATCA 795
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 714 TTTGGTGGAGGAGGATTCGGTGGAGGAGGAATGCCTCCTGCGACTGCTCAATTCCGATCA 773
Query 796 TTTAATTTCGGAGCTACTCGTCAGAGAACAGCTAATAACAATCAAGCACCTGATGCAGGT 855
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 774 TTCAATTTCGGAGCTACTCGTCATAGAACAGCTAATAACAATCAAGCTCCTGATGCAGGT 833
Query 856 TTCAATGCTCGTATACTTCTCCAGCTTCTTCCTGTTGTCTTCATACTTCTGCTCAACTTC 915
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 834 TTCAATGCTCGTATACTTCTCCAGCTTCTTCCTGTTGTGTTCATACTTCTGCTCAACTTC 893
Query 916 ATGCCTTCTTCTCAACCAGTTTACCAACTCTCTGCAACTTATCCTTACCAGTACAAGTTC 975
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 894 ATGCCTTCTTCTCAACCAGTTTACCAACTCTCTGCAACTTATCCTTACCATTACAAGTTC 953
Query 976 ACTACACAGAAAGGTGTCAATTACTTTGTGAAATCGTCTAAATTCGAGCAGGATTATCCA 1035
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 954 ACTACACAGAAAGGTGTCAATTACTTTGTCAAATCGTCTAAATTCGAGCAGGATTACCCA 1013
Query 1036 CGAGATAGCAACGATCGACACACGCTGGAAGAACAAGTTGAGAGAGATTATGTGTCTATA 1095
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CAAGATAGCAACGATCGACACACGCTGGAAGAACAAGTTGAGAGAGATTATGTGTCTATA 1073
Query 1096 CTTAGTCAGAATTGTAGGTATGAGATGCAGAGGAAACAATGGGGATTTGTTCGTGAAACG 1155
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1074 CTTAGTCAGAATTGTAGGTATGAGCTGCAGAGGAAACAATGGGGATTTGTTCGTGAAACG 1133
Query 1156 CCTCATTGTGACATGATGAGGAGATTTGATACAGCTGCTGCTTGAAACAACTGAAGCTAG 1215
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1134 CCTCATTGTGACATGATGAGGAGATTTGATACAGCTGCTGCTTAAAACAACTGAAGCTAG 1193
Query 1216 TA---CCAACAATGAGGCACACATTGGTAATGAATCATCAGCTTATAAAACTTTTATAAT 1272
|| |||| || |||||||||||||||||||||| ||||||||||||| | ||||| ||
Sbjct 1194 TAGTACCAAGAACGAGGCACACATTGGTAATGAATGATCAGCTTATAAA-CATTTATCAT 1252
Query 1273 GTCAATGCCTTCACGAGTCAAACTGGTATATGtttttgttttcttttgttttGGATTATA 1332
||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||
Sbjct 1253 GTCAATGCCTTCACGTGTCAAACTGATATATGTTTTTGTTTT-T---GTTTTGGATTATA 1308
Query 1333 ATGCTTTAGAACCTAACATACGATCTTTGGATTTTGTGTGATTATCTCTATGTTAAGATT 1392
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1309 ACGCTTTAGAACCTAACATACGATCTTTGGATTTTGTGTGATTATCTCTATATTAAGATT 1368
Query 1393 TTGCTTTTGCTAACC 1407
||| |||||||||||
Sbjct 1369 TTGTTTTTGCTAACC 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52602628345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5