BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57360.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486180 jgi|Araly1|486180|fgenesh2_kg.5__2172__AT3G57360.1 1229 0.0
Ahg317116 jgi|Araly1|317116|fgenesh1_pm.C_scaffold_3000132 760 0.0
> Ahg486180 jgi|Araly1|486180|fgenesh2_kg.5__2172__AT3G57360.1
Length=785
Score = 1229 bits (665), Expect = 0.0
Identities = 746/785 (95%), Gaps = 6/785 (1%)
Strand=Plus/Plus
Query 32 ATGGAGGAAAAAGACTGGGAAGCTTCTTCTTCGAGCGAAAACGAAGGTGGTTTTCCAAAC 91
|||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||
Sbjct 1 ATGGAGGAAAAAGACTGGGAAGTTTCTTCTTCAAGCGATAACGAAGCTGGTTTTCCAAAC 60
Query 92 GATGATGACGAAGAGTTTCATTCTGGTGGTTCAGTGCCCAAGTTACAGTTCAGAGTAGGA 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGATGACGAAGAGTTTCATTCTGGTGGTTCAGTGCCCAAGTTACAGTTCAGAGTAGGA 120
Query 152 TCTTCCAAGGCTCGTTGGATTACTGAACTAGGAATGGCGGAAGTTGAGGTTAAAAGGGGA 211
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 121 TCTTCCAAGGCTCGTTGGATTGCTGAATTAGGAATGGCTGAAGTTGAGGTTAAAAGGGGA 180
Query 212 AAACTTTGGACGACAACTGGAATCATTCGTAGTGGAAAGACATATTGCTTCATAGAAGAG 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAACTTTGGACGACAACTGGAATCATTCGTAGTGGAAAGACATATTGCTTCATAGAAGAG 240
Query 272 GCTCTGTATTTGAGTGAAATTGGAGAGTTACAGATCTTAGGTAATGAGGATGACATAGTG 331
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GCTCTGTATTTGAGTGAAATAGGAGAGTTACAGATCTTGGGTAATGAGGATGACATAGTG 300
Query 332 ATCCCATTGAAGGACTTGTATGAGAAAATTGCAGAGGAGAAAAGCGGTTGCTCTTGGGAA 391
||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||
Sbjct 301 ATCCCATTGAAGGACTTGTATGAGAAAATGGCAGAGGAAAAAAGCGGTTGCTGTTGGGAA 360
Query 392 AACTACGAGGTTTATAGATACTTGAAGGGTCTAGGTTACATCCTAGGTAGGCATGGAGTT 451
||||| ||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||
Sbjct 361 AACTATGAGGTTTATAGATACTTAAAGGGTCTAGGTTACATCCTAGGCAGGAATGGAATT 420
Query 452 TCTTGGACGTTAAAGGATGCTGCAA----GA--CCGAATGGTGAAGAAGAGTCAGCTTGT 505
||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 421 TCTTGGACGTTAAAGGATGCTGCAATTACGAGACCAAATGGTGAAGAAGAGTCAGCTTGT 480
Query 506 GCTGGTGAATGTCCTGCAGACAATGATACTGTAACTAAACTCTTGGGAGATATGCAGATT 565
|| |||||||||| || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GCAGGTGAATGTCTTGAAGACAAGGATACTGTAACTAAACTCTTGGGAGATATGCAGATT 540
Query 566 TGTGATGCAAAAGCGGTGTTTGACGTGTATCTACCAAACAGCCGGTTCAAGAAGTCTTCT 625
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTGATGCAAAAGCTGTGTTTGACGTGTATCTACCAAACAGCCGGTTCAAGAAGTCTTCT 600
Query 626 CCTGGTGAACCAAGCTTTGTGGCTTGCTTCTCGGGGGACTCTCCACCAAGCAAAGAAGAT 685
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 601 CCTGGTGAACCAAGCTTTGTAGCTTGCTTCTCTGGGGACTCTCCACCAAGCAAAGAAGAT 660
Query 686 ATTAAAGTCCTGCAAAAGCGCATAGCTGCACCATTAACATTCTGTCATATCGCTCAGGGC 745
|||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct 661 ATTAAAGTCCTGCAAAAGCGAATAGCTGCACCATTAATGTTCTGTCATGTCGCTCAGGGC 720
Query 746 CGTGCCAGTTTCTTTTCCTTCAGTTCTATAGACCTCCCTGTCTTATCATAAAATGTAACA 805
||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 721 CGTGCCAGTTTCTTTTCTTTCAGTTCCATAGACCTTCCTGTCTTACCATAAAATGTAACA 780
Query 806 AAAAA 810
|||||
Sbjct 781 AAAAA 785
> Ahg317116 jgi|Araly1|317116|fgenesh1_pm.C_scaffold_3000132
Length=759
Score = 760 bits (411), Expect = 0.0
Identities = 636/744 (85%), Gaps = 18/744 (2%)
Strand=Plus/Plus
Query 65 AGCGAAAACGAAGGTGGTTTTCCAAACGATGATGACGAAGAGTTTC-ATTCTGGTGGTTC 123
|||||||| |||| |||||| | | | ||||||||||||| | || ||| |||||||||
Sbjct 22 AGCGAAAAAGAAGCTGGTTTACTATGCTATGATGACGAAGAATATCAATT-TGGTGGTTC 80
Query 124 AGTGCCCAAGTTACAGTTCAGAGTAGGATCTTCCAAGGCTCGTTGGATTACTGAACTAGG 183
||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 81 AGTGCCCAAATTACAATTCAGAGTAGGATCTTCCAAGGCTCGTTGGATTGCTGAATTAGG 140
Query 184 AATGGCGGAAGTTGAGGTTAAAAGGGGAAAACTTTGGACGACAACTGGAATCATTCGTAG 243
|||||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||||
Sbjct 141 AATGGCTGAAGTTGAGGTCAAAAGGGGGAAACTTTGGACGACAACTGGAATTATCCGTAC 200
Query 244 TGGAAAGACATATTGCTTCATAGAAGAGGCTCTGTATTTGAGTGAAATTGGAGAGTTACA 303
||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 201 CGGAAAAACATTTTGTTTCATAGAAGAGGCTCTGTATTTGAGTGAAATTGGAGAGTTGCA 260
Query 304 GATCTTAGGTAATGAGGATGACATAGTGATCCCATTGAAGGACTTGTATGAGAAAATTGC 363
| |||| ||| ||||||||||| |||||||| || ||||||||||||||| | |||||||
Sbjct 261 GCTCTTGGGTGATGAGGATGACGTAGTGATCTCACTGAAGGACTTGTATGGGGAAATTGC 320
Query 364 AGAGGAGAAAA-GCGGTTGCTCTTGGGAAAACTACGAGGTTTATAGATACTTGAAGGGTC 422
||||| ||||| | || |||| |||||||||||| ||||||||||||||||| |||||||
Sbjct 321 AGAGG-GAAAATGTGGCTGCTGTTGGGAAAACTATGAGGTTTATAGATACTTAAAGGGTC 379
Query 423 TAGGTTACATCCTAGGTAGGCATGGAGTTTCTTGGACGTT-AAAGGATGCTGC-AAGAC- 479
|||||||||| ||||| |||||||||||| ||||||| | ||| ||| || || ||
Sbjct 380 TAGGTTACATTCTAGGCAGGCATGGAGTTCCTTGGAC-TACAAAACATGTTGTGAATACT 438
Query 480 -CG--AA-TGGTGAAGAAGAGTCAGCTT-GTGCTGGTGAATGTCCTGCA-GACAATGA-T 532
| || || |||||| | |||| ||| ||||||| |||| | || || ||||| || |
Sbjct 439 ACACCAAGTGATGAAGATGGGTCA-CTTTGTGCTGGAGAATTTTCT-CAAGACAAAGACT 496
Query 533 ACTGTAACTAAACTCTTGGGAGATATGCAGATTTGTGATGCAAAAGCGGTGTTTGACGTG 592
|| | || |||||| || | ||||||||||| |||||||||| | |||||||||| ||
Sbjct 497 -CTATTACCAAACTCCTGAGTGATATGCAGATCTGTGATGCAAGACCGGTGTTTGATGTT 555
Query 593 TATCTACCAAACAGCCGGTTCAAGAAGTCTTCTCCTGGTGAACCAAGCTTTGTGGCTTGC 652
||| | |||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 556 TATTTGCCAAACAGCCACTTCAAGAAGTCTTCTCCTGGTGAACCGAGCTTTGTCGCTTGC 615
Query 653 TTCTCGGGGGACTCTCCACCAAGCAAAGAAGATATTAAAGTCCTGCAAAAGCGCATAGCT 712
|||||||| |||||||||||||| |||||||| ||| |||||||||||||||| |||||
Sbjct 616 TTCTCGGGAGACTCTCCACCAAGTAAAGAAGAAATTGAAGTCCTGCAAAAGCGTGTAGCT 675
Query 713 GCACCATTAACATTCTGTCATATCGCTCAGGGCCGTGCCAGTTTCTTTTCCTTCAGTTCT 772
||||||| | ||||||||||||| | | ||||||||||||||||||||||||| |||
Sbjct 676 TCACCATTGATGTTCTGTCATATCGTTGAAGGCCGTGCCAGTTTCTTTTCCTTCAATTCC 735
Query 773 ATAGACCTCCCTGTCTTATCATAA 796
| ||||||| ||||||| |||||
Sbjct 736 ACGGACCTCCTTGTCTTACCATAA 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5