BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57380.1
Length=1772
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486181 jgi|Araly1|486181|fgenesh2_kg.5__2173__AT3G57380.1 2285 0.0
> Ahg486181 jgi|Araly1|486181|fgenesh2_kg.5__2173__AT3G57380.1
Length=1736
Score = 2285 bits (1237), Expect = 0.0
Identities = 1541/1682 (92%), Gaps = 44/1682 (3%)
Strand=Plus/Plus
Query 123 AGAACATCAAAAGTCGATTAGAAGCATC-TAAAAAATCAAAACTTTGCTTGTGGGGTTTC 181
||| |||||||||||||| ||| ||||| | ||||||||||||||||||||| ||||||
Sbjct 66 AGAGCATCAAAAGTCGATCAGAGGCATCGT-AAAAATCAAAACTTTGCTTGT-TGGTTTC 123
Query 182 TTCTTTTGTTCGATAGAAAATGGTTCAATACAAAAGACTAATTAAAAAAGGAGAAAAGCA 241
||||||||||| | ||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 124 TTCTTTTGTTCTACAGAAAATGGTTCAATACAAGAGACTAATCAAAAAAGGGGAAAAGCT 183
Query 242 TAGACTTTCGGT---AGAAGAAGGTGGTTCCGGTGCCTCCGCCGTCACTGTCTCCGGCGG 298
||||||||| || |||||||||||| ||||||||| || |||| | |||||||||||
Sbjct 184 TAGACTTTCAGTAAAAGAAGAAGGTGGCTCCGGTGCCAACGTCGTCGCCGTCTCCGGCGG 243
Query 299 TGTG-TACTCAAAGACAGCCAAACAGAAGCTtctcttaactatctttctctctttgctct 357
|| | |||||||||||| | ||||||||| ||||||| | ||||||||||||||| ||||
Sbjct 244 TG-GCTACTCAAAGACAACTAAACAGAAGATTCTCTTTATTATCTTTCTCTCTTTACTCT 302
Query 358 catgctgttacatcttcagcttctcctctttctctcttctAGGTGCTTTTAGCAGAGAAA 417
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 303 CATGCTGTTACATCTTCAGCTTTTCCTCTTTCTCTCTTCTAGATGCTTTTAGCAGAG-AG 361
Query 418 G-TAAAGGATTTGGTCCTTATGAACTGTTCATTGCACCTCTTTGTTCAGGAACCTCTAAT 476
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 362 GTTAAAGGATTTGGTCCTTATGAATTGTTCATTGCACCTCTTTGTTCAGGAACCTCAAAT 421
Query 477 GGAACAATTTGTTGTGACAGAACCGGTTCTAGATCCGACGTTTGTATCATGAAAGGAGAC 536
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 422 GGAACAATTTGTTGTGACAGAACCGGTTTTAGATCCGACGTTTGTATCATGAAAGGAGAT 481
Query 537 GTTAGGACACACTCTGCTTCGTCATCAGTCTTCCTCTTCACTTCCCTCAAAAACAAGACC 596
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 482 GTTAGGACACACTCTGCTTCTTCATCAGTCTTCCTCTTCACGTCCCTCAAAAACAAGA-T 540
Query 597 AA-GATCAC-GAAAAAGATCAAACCTTACACAAGAAAATGGGAAACAAGTGTGATGCAAA 654
|| |||||| | ||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 541 AACGATCACTG-GAAAGATCAAGCCTTACACTAGAAAATGGGAAACTAGTGTGATGCAAA 599
Query 655 CAGTTCAAGAACTCAATCTCGTTTACAGAGATGAAGAAAACAATTCTTTAGTCGTCTCCT 714
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||| |
Sbjct 600 CAGTTCAACAACTCAATCTCGTTTACAGAGATGAAAAAAACAATTATTTAGTC-TCTGTT 658
Query 715 -CTG----T--TAATGACATCTGCGATGTGTTCTATAACGTTCCTGCTGTGTTTTTCTCA 767
|| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GATGAACATAATAACAACATCTGCGATGTGTTCTATAACGTTCCTGCTGTGTTTTTCTCA 718
Query 768 ACTGGTGGATATACAGGAAATGTTTACCACGAATTCAACGATGGAATCATCCCTTTGTTC 827
|| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 719 ACAGGTGGATATACCGGAAATGTTTACCATGAATTCAACGACGGAATCATCCCTTTGTTC 778
Query 828 ATCACTTCACATCATTTCAACAAGAAGGTTGTGTTTGTGATTGTTGAGTATCATAGTTGG 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCACTTCACATCATTTCAACAAGAAGGTTGTGTTTGTGATTGTTGAGTATCATAGTTGG 838
Query 888 TGGATTATGAAATATGGAGATATCGTTTCTCAGCTATCAGATTATCCTCCTGTCGACTTT 947
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 839 TGGGTTATGAAATATGGAGATATCGTTTCTCAGCTATCCGATTATCCTCCTGTCGACTTT 898
Query 948 AACGGCGACAAGAGAACACATTGTTTCAAGGAAGCTATTGTGGGATTGAAGATTCACGAC 1007
|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 899 AATGGCGACAAGAGAACGCAATGTTTCAAGGAAGCTATTGTGGGATTGAAGATTCACGAC 958
Query 1008 GAGTTAACCGTTGAATCATCGTTGATGCTTGGGAATAAAACAATTCTTGATTTCAGAAAT 1067
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 GAGTTAACCGTTGATTCATCGTTGATGCTTGGGAATAAAACGATTCTTGATTTCAGAAAT 1018
Query 1068 GTGCTGGATCAGGCTTATTGGCCACGTATCCATGGATTGATTCAAGAGGAAGAACTCAAG 1127
||| || |||||||||||||||| ||||||| |||||||| |||||||||||||||| ||
Sbjct 1019 GTGTTGAATCAGGCTTATTGGCCGCGTATCCGTGGATTGAGTCAAGAGGAAGAACTCGAG 1078
Query 1128 GCAGCTAAC-A-A---G----A-----C-AGAAGACGGTTTCAAGAAACC-AATATTGGT 1171
||||| ||| | | | | | ||||||||||||||||||||| || ||||||
Sbjct 1079 GCAGCAAACAAGACCGGTAAAAGGGTTCAAGAAGACGGTTTCAAGAAACCGAA-ATTGGT 1137
Query 1172 GATTCTGTCTAGAAATGGATCGAGGGAGATACTAAATGA-GAGTCTTTTGGTTGAATTAG 1230
||||||||| |||||||||||||| |||||||| ||||| | |||||||||| | |||||
Sbjct 1138 GATTCTGTCGAGAAATGGATCGAGAGAGATACTCAATGATG-GTCTTTTGGTGGCATTAG 1196
Query 1231 CTGAGGAAATTGGATTCATCGTCCATGTTTTGAGACCGGATAAAACAACAGAGCTGGCAA 1290
| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1197 CCGAGGAAATCGGATTCATCGTTTATGTTTTGAGACCGGATAAAACAACAGAGCTGGCAA 1256
Query 1291 AAATCTACAGATGTTTGAATTCTAGTGATGTGATGATTGGTGTTCACGGAGCTGCAATGA 1350
||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1257 AAATCTACAAATGTTTGAATTCTAGCGATGTGATGATCGGTGTTCACGGAGCTGCAATGA 1316
Query 1351 CACATTTACTTTTCTTGAAACCGAAAACAGTCTTTATACAGATTATACCAATAGGAACCG 1410
||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1317 CACATTTCCTTTTCATGAAACCGAAAACTGTCTTTATACAGATTATACCAATAGGAACCG 1376
Query 1411 AATGGGCTGCTGAGACTTACTATGGTAAACCAGCTAAGAAGATGAGATTGAAGTACATTG 1470
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1377 AATGGGCAGCTGAGACTTACTATGGAAAACCAGCCAAGAAGATGAGATTGAAGTACATTG 1436
Query 1471 GTTACAAGATTAAACCGAAAGAGAGCTCTTTGTACGATGAATATGGCATCGATGATCCCA 1530
||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 1437 GTTACAAGATTAAACCGAAAGAGAGCTCTTTATATGATGAATATGGCAAAGATGATCCCA 1496
Query 1531 TTATCCGAGATCCTAAGAGTTTTACTCAAAAAGGATGGGATTACACTAAGAAGATTTATC 1590
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1497 TAATCCGAGATCCTAAGAGTTTTACTCAAAAAGGATGGGACTACACTAAGAAGATTTATC 1556
Query 1591 TTGAGCGCCAAAACGTGAAGCTTGATTTGAAAAGATTTAGGAAACCGTTGTCTCGTGCTT 1650
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1557 TCGAGCGCCAGAACGTGAAGCTTGATTTGAAAAGATTCAGGAAACCGTTGTCTCGTGCTT 1616
Query 1651 ATGATTTCTCGATGAAGCGAATTGGACTGGTGTATATCAGTCACAAACCGGATGTTACCA 1710
| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
Sbjct 1617 ACGATTTCTCGATGAAGCGAATTGGACCGGTGTATAGCAGTCACAAACCGGATGTTACTA 1676
Query 1711 ATTAAACCGGGGTTTGAGATTGTATAATA-TAATTTTGGAGATGTAAACATTTTGTACAG 1769
||||||||| | ||||||||||||||| | || ||||||||||||||| |||||||||||
Sbjct 1677 ATTAAACCGAG-TTTGAGATTGTATAA-ACTAGTTTTGGAGATGTAAATATTTTGTACAG 1734
Query 1770 AG 1771
||
Sbjct 1735 AG 1736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66505567770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5