BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57390.1
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486183 jgi|Araly1|486183|fgenesh2_kg.5__2175__AT3G57390.2 1173 0.0
> Ahg486183 jgi|Araly1|486183|fgenesh2_kg.5__2175__AT3G57390.2
Length=1544
Score = 1173 bits (635), Expect = 0.0
Identities = 724/765 (95%), Gaps = 13/765 (2%)
Strand=Plus/Plus
Query 393 ATGGAGCAAATTCTTTCTAGATATGGATACACTACTGCGTCCACTGAGCATAAACAACAA 452
||||||||||||||||| ||||||||||||||||||||||| ||||||||| | | |||
Sbjct 788 ATGGAGCAAATTCTTTCCAGATATGGATACACTACTGCGTCTACTGAGCAT--A-AGCAA 844
Query 453 AGAGAACACCAACTTCTAATTTGTGCTTCACATGGAAATGAAGCTGTGTTGCGAAATGAT 512
|||||| | ||||||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct 845 AGAGAAAAACAACTTCTAATTTGTGCTTCACATGAAAACGAAGTTGTGTTGCGAAATGAT 904
Query 513 GATTCTATGAAGGGGGAACTTGAAAGATTACAGCTTGCAATTGAGAGACTTAAGGGTAAG 572
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GATTCTATGAAGGGAGAACTTGAAAGATTACAGCTTGCAATTGAGAGACTTAAGGGTAAG 964
Query 573 GAGCTTGAAGGTATGAGTTTCCCGGATCTTATTTCTCTTGAAAACCAGTTGAACGAGAGC 632
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GCGCTTGACGGTATGAGTTTCCCGGATCTTATTTCTCTTGAAAACCAGTTGAACGAGAGC 1024
Query 633 TTGCATAGTGTCAAGGATCAAAAGACACAAATCCTGCTCAACCAGATTGAGAGATCCAGG 692
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1025 TTGCATAGTGTCAAGGATCAAAAGACACAAATCCTGCTCAACCAGATTGAAAGATCCAGG 1084
Query 693 ATACAGGAGAAAAA-AGCATTGGAAGAAAACCAAATCTTGCGCAAACAGGTTGAGATGTT 751
||||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1085 TTACAGGA-AAAAAGAGCATTGGAAGAAAACCAAATCTTGCGCAAACAGGTAGAGCTGTT 1143
Query 752 GGGGAGAGGTTCAGGACCAAAAGTGTTGAATGAAAGGCCTCAAGATTCTAGCCCAGAAGC 811
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1144 GGGGAGAGGTTCAGGACCAAAAGTGTTGAACGAAAGGCCTCAAGTTTCTAGCCCAGAAGC 1203
Query 812 CGATCCCGAGAGCTCTTCATCAGAAGAGGATGAGAATGACAACGAGGAGCACCATTCCGA 871
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1204 CGATCCCGAGAGCTCTTCATCAGACGAGGATGAGAATGACAACGAGGAGCACCATTCCGA 1263
Query 872 CACTTCCTTGCAGTTGGGGTTGTCGTCGACGGGGTATTGCACAAAGAGAAAGAAGCCGAA 931
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1264 CACTTCCTTGCAGTTGGGGTTGTCGTCGACGGGGTATTGCACAAAGAGGAAGAAGCCGAA 1323
Query 932 GATCGAACTGGTCTGCGATAACTCTGGGAGTCAAGTGGCTTCTGATTGATGGAATCGATT 991
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 1324 GATCGAACTGGTCTGCGATAACTCTGGAAGTCAAGTGGCTTCTGATTGATTGAAACGATT 1383
Query 992 ATTTTTCTAATTCTGGTTGTTTAGGGG-T-CTCTATGTGTCTTCTTGTTTCTGGCTGTTC 1049
||| ||||||| ||||| |||||||| | |||||||| |||||||||| | ||||||||
Sbjct 1384 ATTCTTCTAATCCTGGT-GTTTAGGGTCTTCTCTATGTATCTTCTTGTTCCGGGCTGTTC 1442
Query 1050 TTTTGCTTTATTTCATCTCAAGTAGAGTTTTCTTAATGTTTAGGTGGAACATTTTTCCAT 1109
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1443 TTTTGCTTTATTTCATCTCAAGTAGAGTTTTCTTAATGTTTAGGTG-AACATTTTTCC-T 1500
Query 1110 -AATCAAGAAGGGATTTGATCAA-TCAATAACATTAGATTTTCTT 1152
||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1501 CAATCAAGAAGG-ATTTGATCAAATCAATAACATTAGATTTTCTT 1544
Score = 438 bits (237), Expect = 4e-122
Identities = 306/336 (91%), Gaps = 18/336 (5%)
Strand=Plus/Plus
Query 59 CCTCCTATATATACAAAatcttaagaaatctctctacttgtttcctctgttatcataatc 118
|||||||||||||||||||||| ||||||||||||||||||||||| | || | |||
Sbjct 26 CCTCCTATATATACAAAATCTTTCTCAATCTCTCTACTTGTTTCCTCTG-T-TC-TCATC 82
Query 119 tcttctctctatatctcttctcttcttcttTTACCCTGttttttttttCATTCCACAGAG 178
||||||||| || || ||||| ||||||||||||||||||| |||| ||||||
Sbjct 83 TCTTCTCTC--TA-------TC-TCTTC-TTTACCCTGTTTTTTTTTTTATTCTACAGAG 131
Query 179 CCCAGGTTGATTGATTTTGTTATTC--AGAGATATGGGGAGAGGAAGGATTGAGATTAAG 236
||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 132 CCCAGATTGATTGATTTTGTTGTTCAGAGAGATATGGGGAGAGGAAGGATTGAGATTAAG 191
Query 237 AAGATTGAGAATATCAACAGTCGTCAAGTCACTTTCTCTAAGA-GACGAAACGGTTTGAT 295
|||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 192 AAGATTGAGAATGTCAACAGTCGTCAAGTCACTTTCTCTAA-ACGACGAAACGGTTTGAT 250
Query 296 CAAGAAGGCTAAAGAGCTTTCGATTCTCTGTGACGCCGAGGTTGCTCTTATCATCTTCTC 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GAAGAAGGCTAAAGAGCTTTCGATTCTCTGTGACGCCGAGGTTGCTCTTATCATCTTCTC 310
Query 356 CAGCACCGGCAAGATTTACGATTTCTCCAGCGTCTG 391
|||||||||||||||||||||||||||||||| |||
Sbjct 311 CAGCACCGGCAAGATTTACGATTTCTCCAGCGGCTG 346
Score = 52.8 bits (28), Expect = 5e-06
Identities = 31/32 (97%), Gaps = 1/32 (3%)
Strand=Plus/Plus
Query 16 ATTTGATCAATTTCTAAAGAAAACCCCTTCCT 47
|||||||||||||||||||||||||||| |||
Sbjct 1 ATTTGATCAATTTCTAAAGAAAACCCCT-CCT 31
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43117019127
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5