BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57400.1
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486184 jgi|Araly1|486184|fgenesh2_kg.5__2176__AT3G57400.1 2194 0.0
Ahg357492 jgi|Araly1|357492|fgenesh1_pg.C_scaffold_8001279 481 9e-135
Ahg359415 jgi|Araly1|359415|fgenesh1_pg.C_scaffold_205000001 464 9e-130
> Ahg486184 jgi|Araly1|486184|fgenesh2_kg.5__2176__AT3G57400.1
Length=1707
Score = 2194 bits (1188), Expect = 0.0
Identities = 1584/1756 (90%), Gaps = 103/1756 (6%)
Strand=Plus/Plus
Query 29 agagaaTGCTCTCAGTCTCAGCCTCTCCTCACCACCACTAACCCCAGAAGAATCCTCACA 88
||||||||||||||||||||||||||| ||| || ||||| ||||||||||| || |
Sbjct 1 AGAGAATGCTCTCAGTCTCAGCCTCTCTTCA-CA--ACTAA-CCCAGAAGAAT--TCTGA 54
Query 89 GACagagagagagagagagaATCAGAATGGGTTTGATATCAGCGAAAGAGACGAAG---A 145
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 55 GAGAGAGAGAGAGAGAGAGAATC--AATGGGTTTGATATCAGCGAAAGAGACGAAGAACA 112
Query 146 ACAACACTAGAGGAATGGGTTTGCTCTTAGTCTTCTTCCCCGACCACCACAACAACAACG 205
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 113 ACAACACTAGAGGAATGGGTTTGCTCTTAGTCTTCTTCCCCGACCACCACAACGACGAC- 171
Query 206 ACGAC-TC-TCcttcttcttcttcttcttctccggcaacaacaactctcttccgctccag 263
| | || ||| ||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 172 TCTCCTTCTTCC-TCTTCCTCTTCTTCTTCTCCGG---CAACAACTCTCTTCCGCTCCAG 227
Query 264 atcttctcgtcttctcctctccaaagctcaatccacaatctcaatctgcatcctcctcct 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 ATCTTCTCGTCTTCTCCTCTCCAAAGCTCAATCCACAATCTCAATCTGCATCCTCCTCCT 287
Query 324 cttcctcactctcttcctcttcactctctccaccttcgaaccttcctctGGCTTTCCCGC 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CTTCCTCACTCTCTTCCTCTTCACTCTCTCCACCTTCGAACCTTCCTCTGGCTTTCCCGC 347
Query 384 CGTTTCTTCTTCTCGTCCTCACCGTCGATTTCTCCTCAACCGCGACATCTCCGCCTCTTC 443
|| | |||||||||||||||||| |||||||||||||| ||||||||||||| | ||
Sbjct 348 CG--T-TTCTTCTCGTCCTCACCGCCGATTTCTCCTCAATCGCGACATCTCCG--GC-TC 401
Query 444 TGAATCTCGTCGTCGTTATAACCGATTCGCTCTCCAAGGTATGGGTACTCTGTTTCTCAG 503
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 402 TGAATCTCGTCGTCGTTATAACCGATTCGCTCTGCAGGGAATGGGTACTCTGTTTCTCAG 461
Query 504 AGGAACCAAGAGCATGCACGATTTGATTGTTGTTCATATCTCTTCCGATACTACGGAAGA 563
|||||||||||||||||||||||||||||||| |||| | |||||||||| ||||||||
Sbjct 462 AGGAACCAAGAGCATGCACGATTTGATTGTTGCTCATGTAGCTTCCGATACGACGGAAGA 521
Query 564 CGATCTCCGTCTCTTCATGCGCTTGATCCACCGCTCCGGTGTCACTTCCAAATCCGACGT 623
||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||
Sbjct 522 CGATCTCCGTCTCTTCATGCGGTTGCTTCACCGCTCCGGAGTCACTTCCAAATCCGACGT 581
Query 624 CGTTTTACTCTTCAATTCGGGTACGAGATTCACT-GAAATGATCGAAGAAGAGAACGACT 682
|||| ||||||||||||||||| |||||||| | ||| |||||||||||||||||||||
Sbjct 582 CGTTCTACTCTTCAATTCGGGTTCGAGATTC-GTCGAATTGATCGAAGAAGAGAACGACT 640
Query 683 CGTTCTTAAAACTCGTTGATGTTCATC-G-----GAATTCGTCGAATCAAATCGACTCCG 736
| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 641 CCTTCTTAAAACTCGTTGATGTTCATCGGAATTCGAATTCGTCGAATCAAATCGACTCCG 700
Query 737 TTTGGGGATTTAATCTCACGAAATTCATGAAGAAGCAAT----C------GA-A-ATCAT 784
|||||||||||||||| ||||||||||||||||||||| | || | |||||
Sbjct 701 TTTGGGGATTTAATCTGGCGAAATTCATGAAGAAGCAATGGAGCAAGAAGGAGACATCAT 760
Query 785 CATCGTC-T--GAGCCAATTTGGGGGAAGAAGACGCATCGAGC---TAATTACAACGATA 838
||||||| | ||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 761 CATCGTCATCAGAGCCAATTTGGGGGAAGAAGACTCATCGAGCGAATAATTTCAACGATT 820
Query 839 CGTCGTCGTTGAATAACTCGACCGAGTCAACCGAGTTGTTGACACATGGCTCAGTAGTGG 898
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 821 CGTCGTCATTGAACAACTCGACCGAGTCAACCGAGTTGTTGACTCATGGCTCAGTAGTGG 880
Query 899 GTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGCTATCCGGGTTTATGGATCACGTTC 958
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GTTTCGACGTGACTGAGCTGGATCCTGAAAACTCGCTATCCGGGTTTATGGATCACGTTC 940
Query 959 CGATAAGTTTGAGAAGATGGGCGTGTTACCCAATGCTGCTAGGTCGAGTAAGACGCAATT 1018
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 941 CGATAAGCTTGAGAAGATGGGCGTGTTACCCAATGCTGCTAGGTCGAGTAAGGCGCAATT 1000
Query 1019 TCAAACACGTTATGCTCGTGGACGCTAAAACCTCCTTGTTCCTCGGTGACCCGCTAACCC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1001 TCAAACACGTTATGCTCGTGGACGCTAAAACCTCCTTGTTCCTCGGTGACCCGTTAGCCC 1060
Query 1079 GGATTCGTAACCGGAGCCTTGAGTCAGTCCTCTTCTTCTCTAAACACAGTAGTAGTAGCA 1138
|||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1061 GGATTCGTAACCGGAGCCCCGAGTCAGTCCTCTTCTTCTCTAAACAC---ACTAGTAGCA 1117
Query 1139 AGAAAAGCTCCGAGGTTAATCCGGCGATTCTGATCGGTGGAGCTAAAGGAATCAGGAGGT 1198
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1118 AGAAAAGCTCCGACGTTAATCCGGCGATTTTGATCGGTGGAGCTAAAGGAATCAGGAGAT 1177
Query 1199 TATCGAGCTCGATGCACACTGAGATCGTGAGAGCGACGATTCAGCAGCAGCATAAGAAGA 1258
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1178 TATCGAGCTCGATGCACACTGAGATTGTGAGAGCGACGATTCAGCAGCAGCATAAGAAGA 1237
Query 1259 AGAACTCGGTTACGGAATCGGTGGTGT-TGAGCCAACTCGTTGGGAATGTTCACATGACG 1317
||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||
Sbjct 1238 AGAACTCGGTTACGGAATCGGTGGT-TCTGAGTCAACTCGTTGGGAATGTTCACATGACG 1296
Query 1318 AAGAATTTTGAAGTGGTTACGAGTGAGTCGGTGGTACCGGAAGCGAGTTCACTGGCTGAG 1377
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 AAGAATTTTGAGGTGGTTACGAGTGAGTCGGTGGTACCGGAAGCGAGTTCACTGGCTGAG 1356
Query 1378 TTAAGGACGAGAAACTCGGCGGCTTCGTCGATAAAGAATCATGATATAATACAAAGAGGT 1437
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1357 TTAAGGACGAGAAACTCGGCGGCTTCGTCGATGAAGAATCATGATATAATACAACGAGGT 1416
Query 1438 GGTGGTAATAGTAATAGTAATCATATTATTGATATTATGGCGATTATTATGAAACGTATT 1497
||| | |||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1417 GGT-G-----GTAATAGTAATC---------ATATTATGGCTATTATTATGAAACGTATT 1461
Query 1498 TGTTCTTGTGAATTAGATTCTTCTGTTTATAATTACTGTTAGCATTATTTTAAAAGAGTT 1557
||||||||||||||||||||||||| | ||| || |||| | | |
Sbjct 1462 TGTTCTTGTGAATTAGATTCTTCTG----T--TTA----TA--ATTA--CT------G-T 1500
Query 1558 TACGAAACaaaaaaaaTAGGGAAAattttaatttatttgtttgaaagttttgtacacatt 1617
|| | |||||||||||| ||||||| |||| | |||| || | |||||||||||||
Sbjct 1501 TA-G-----AAAAAAATAGGG-AAATTTTTATTT-TGTGTTCGAGATTTTTGTACACATT 1552
Query 1618 tgacatttgttatgttctttagatttttgatttttcacagatgtttttattaGTGTGTCC 1677
|||||||||||||||| |||||||||||||||||||| |||| || |||||||||||||
Sbjct 1553 TGACATTTGTTATGTT-GTTAGATTTTTGATTTTTCACGGATG-TTCTATTAGTGTGTCC 1610
Query 1678 ACGTTCTGTATTCATTATTGATTTGGTCTCCTTCGAAATAATCATTTGATAAAATCAGCA 1737
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1611 ACG--ATGTATTCATTATTGATTTGGTCTCCTTCGATATAATCATTTGATAAAATCAGGA 1668
Query 1738 AAATACCATTATTTTT 1753
|||||| ||| |||||
Sbjct 1669 AAATACGATTGTTTTT 1684
> Ahg357492 jgi|Araly1|357492|fgenesh1_pg.C_scaffold_8001279
Length=594
Score = 481 bits (260), Expect = 9e-135
Identities = 394/454 (87%), Gaps = 28/454 (6%)
Strand=Plus/Plus
Query 876 GTTGACACATGGCTCAG-TAGTGGGTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGC 934
|||||| |||| ||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 153 GTTGACTCATGTCTC-GATAGTGGGTTTCGACGTGACTGAGTTGGATACTGAAAACTCGC 211
Query 935 TATCCGGGTTTATGGATCACGTTCCGATAAGTTTGAGAAGATGGGCGTGTTACCCAATGC 994
||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||
Sbjct 212 TATCCGGGTTTATGGATCAAGTTCCGATAAGCTTGAGGAGATGGGCTTGTTACCCAATGC 271
Query 995 TGCTAGGTCGAGTAAGACGCAATTTCAAACACGTTATGCTCGTGGACGCTAAAACCTCCT 1054
|||| ||| ||||||| |||| |||||||||||||||||| || |||||||||||||| |
Sbjct 272 TGCTTGGTAGAGTAAGTCGCAGTTTCAAACACGTTATGCTTGTCGACGCTAAAACCTCAT 331
Query 1055 TGTTCCTCGGTGACCCGCTAACCCGGATTCGTAACCGGAGCCTTGA-GTCAGTCCTCTTC 1113
||||| ||||||||||| |||||||||||||||||||||||| || || ||||||||||
Sbjct 332 TGTTCATCGGTGACCCGTTAACCCGGATTCGTAACCGGAGCCCCGACGT-AGTCCTCTTC 390
Query 1114 TTCT-CTAAACACAGTAGTAGTAGCAAGAAAAGC-TCCGAGGTTAATCCGGCGATTCTGA 1171
|||| || || | | | || ||||||| || ||||||||||||||||||||| |||
Sbjct 391 TTCTACT---CA-A--A--A-TA-CAAGAAA-GCCTCCGAGGTTAATCCGGCGATTTTGA 439
Query 1172 TCGGTGGAGCTAAAGGAATCAGGAGGTTATCGAGCTCGATGCACACTGAGATCGTGAGAG 1231
||||||||||||||||||||||||| ||||||||||| ||||| ||| |||| |||||||
Sbjct 440 TCGGTGGAGCTAAAGGAATCAGGAGATTATCGAGCTCCATGCATACTCAGATTGTGAGAG 499
Query 1232 C--GA-CGATT-CAGC-A-GCA-GCAT-AAGAAGAAGAACTCGGTTACGGAATCGGTGGT 1283
| || | | | || | | | | | || |||||||||||||| |||||||||||||| ||
Sbjct 500 CAAGAGCAAGTGCAACGATG-ATG-ATCAAGAAGAAGAACTCAGTTACGGAATCGGTTGT 557
Query 1284 GTTGAGCCAACTCGTTGGGAATGTTC-ACATGAC 1316
|||||| ||||||||||||||| ||| | |||||
Sbjct 558 GTTGAGTCAACTCGTTGGGAATTTTCCATATGAC 591
> Ahg359415 jgi|Araly1|359415|fgenesh1_pg.C_scaffold_205000001
Length=594
Score = 464 bits (251), Expect = 9e-130
Identities = 391/454 (86%), Gaps = 28/454 (6%)
Strand=Plus/Plus
Query 876 GTTGACACATGGCTCAG-TAGTGGGTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGC 934
|||||| |||| ||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 153 GTTGACTCATGTCTC-GATAGTGGGTTTCGACGTGACTGAGTTGGATACTGAAAACTCGC 211
Query 935 TATCCGGGTTTATGGATCACGTTCCGATAAGTTTGAGAAGATGGGCGTGTTACCCAATGC 994
||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||
Sbjct 212 TATCCGGGTTTATGGATCAAGTTCCGATAAGCTTGAGGAGATGGGCTTGTTACCCAATGC 271
Query 995 TGCTAGGTCGAGTAAGACGCAATTTCAAACACGTTATGCTCGTGGACGCTAAAACCTCCT 1054
|||| ||| ||||||| |||| |||||||||||||||||| || |||||||||||||| |
Sbjct 272 TGCTTGGTAGAGTAAGTCGCAGTTTCAAACACGTTATGCTTGTCGACGCTAAAACCTCAT 331
Query 1055 TGTTCCTCGGTGACCCGCTAACCCGGATTCGTAACCGGAGCCTTGA-GTCAGTCCTCTTC 1113
||||| ||||||||||| |||||||||||||||||||||||| || || || |||||||
Sbjct 332 TGTTCATCGGTGACCCGTTAACCCGGATTCGTAACCGGAGCCCCGACGT-AGCCCTCTTC 390
Query 1114 TTCT-CTAAACACAGTAGTAGTAGCAAGAAAAGC-TCCGAGGTTAATCCGGCGATTCTGA 1171
|| | || || | | | | ||||||| || ||||||||||||||||||||| |||
Sbjct 391 TTGTACT---CA-A--A--AC-A-CAAGAAA-GCCTCCGAGGTTAATCCGGCGATTTTGA 439
Query 1172 TCGGTGGAGCTAAAGGAATCAGGAGGTTATCGAGCTCGATGCACACTGAGATCGTGAGAG 1231
||||||||||||||||||||||||| ||||||||||| ||||| ||| |||| |||||||
Sbjct 440 TCGGTGGAGCTAAAGGAATCAGGAGATTATCGAGCTCCATGCATACTCAGATTGTGAGAG 499
Query 1232 C--GA-CGATT-CAGC-A-GCA-GCAT-AAGAAGAAGAACTCGGTTACGGAATCGGTGGT 1283
| || | | | || | | | | | || |||||||||||||| |||||||||||||| ||
Sbjct 500 CAAGAGCAAGTGCAACGATG-ATG-ATCAAGAAGAAGAACTCAGTTACGGAATCGGTTGT 557
Query 1284 GTTGAGCCAACTCGTTGGGAATGTTC-ACATGAC 1316
|||||| ||||||||||||||| ||| | |||||
Sbjct 558 GTTGAGTCAACTCGTTGGGAATTTTCCATATGAC 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419733650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5