BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57420.1
Length=2645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938716 jgi|Araly1|938716|scaffold_502907.1 3757 0.0
Ahg483259 jgi|Araly1|483259|fgenesh2_kg.4__2319__AT2G41770.1 2250 0.0
Ahg935009 jgi|Araly1|935009|scaffold_402997.1 405 8e-112
Ahg935010 jgi|Araly1|935010|scaffold_402998.1 200 4e-50
Ahg935008 jgi|Araly1|935008|scaffold_402996.1 110 7e-23
> Ahg938716 jgi|Araly1|938716|scaffold_502907.1
Length=2339
Score = 3757 bits (2034), Expect = 0.0
Identities = 2239/2340 (96%), Gaps = 5/2340 (0%)
Strand=Plus/Plus
Query 145 TTTAGTGCTTGAATCTGATGTTGGTTCAAGATCGTGTGGCTCCTAAGCCACCAAAATCTC 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TTTAGTGCTTGAATCTGATGTTGGTTCAAGATCGTGTGGCTCCTAAGCCACCAAAATCTC 63
Query 205 GGATCAGAGAACTTCCTAGTCGGGACCGATTCGCTGAACCCAAAATCCTAGATTTCTCTT 264
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 64 GGATCAGAGAACTTCCTAGTCGGGACCGATTCGCTGAACCCAAAAACCTAGATTTTTCTT 123
Query 265 CATGGGTTTCCGACAATGTCTACAGAATCGTAATCATCTTCCTCTTCATCGTCACCGTCG 324
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct 124 CATGGGTTTCCGACAATGTCTATAGAATCGTAATCTTCTTCCTCTTCATCGTCACCGTTG 183
Query 325 CTGCTTTCTTCTTCCTCTACAACACCACCGACACTGCTTCTCTCCTCTGTTTCCAATCCC 384
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 184 CTGCTTTCTTCTTCCTCTACAACACCACCGACACTGCTTCTCTCCTTTGTTTCCAATCCC 243
Query 385 AATCAACTCAATCTCTTCAATCTCTCACTCGCCCTCAAATCAACTGGAACTCGATCCAAA 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AATCAACTCAATCTCTTCAATCTCTCACTCGCCCTCAAATCAACTGGAACTCGATCCAAA 303
Query 445 TCGTCTCCGACAAAACCTCACCTTACGCTAGTTTCCGTACAGAGAAATGGATCGTTGTGT 504
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 304 TCGTCTCCGACAAAACCTCACCTTACCCTAGTTTCCGTACAGAGAAATGGATCGTTGTGT 363
Query 505 CGGTGACAAAGCACCCAACAGAGGAGCTCAAAGGTTTGGTCAAGATTAAAGGATGGCAAG 564
||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 364 CGGTGACCAAGTACCCAACAGAGGAGCTCAAGGGTTTGGTCAAAATTAAAGGATGGCAAG 423
Query 565 TTCTAGCGATCGGAAACTCTTTAACACCTAAAGATTGGAATCTCAAAGGTGCGATTTTTC 624
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 TTCTAGCGATTGGAAACTCTTTAACACCTAAAGATTGGAATCTCAAAGGTGCGATTTTTC 483
Query 625 TATCTCTAGATGCTCAAGCTGAGCTTAATTACCGGATTTTGGATCATTTGCCTTATGATT 684
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 484 TATCTTTAGATGCTCAAGCTGAGCTGAATTACCGGATTTTGGATCATTTGCCTTATGATT 543
Query 685 CCTTCGTACGCAAAAGTGTCGGTTACTTGTTTGCGATCCAGCATGGTGCAAAGAAGATCT 744
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 544 CCTTCGTACGCAAAAGTGTCGGTTACTTGTTCGCGATTCAGCATGGTGCAAAGAAGATCT 603
Query 745 TTGATGCAGATGATCGTGGTGAAGTGATTGATGGAGATCTTGGGAAACATTTTGATGTAG 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 ACGATGCAGATGATCGTGGTGAAGTGATTGATGGAGATCTTGGGAAACATTTTGATGTAG 663
Query 805 AGTTAGTTGGAGAAGACGCTAGGCAAGAACCAATCTTACAGTATAGTCACGAAAACCCGA 864
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 664 AGTTAGTAGGAGAAGACGCTAGGCAAGAACCAATCTTGCAGTATAGTCACGAAAACCCGA 723
Query 865 ATCGAACTGTGGTGAATCCGTATATCCATTTCGGGCAACGATCGGTTTGGCCTAGAGGTT 924
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 724 ATCGAACTGTGGTGAATCCTTATATCCATTTCGGGCAACGATCAGTTTGGCCTAGAGGTT 783
Query 925 TGCCATTAGAGAATGTAGGTGAGATCAATCATGAAGAGTATTACACTGAGGTTTTTGGTG 984
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TACCATTAGAGAATGTAGGTGAGATCAATCATGAAGAGTATTACACTGAGGTTTTTGGTG 843
Query 985 GTAAACAGTTTATTCAGCAAGGGATTTCCAACGGTTTGCCGGATGTTGATTCCGTGTATT 1044
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 844 GTAAACAGTTTATTCAGCAAGGGATTTCGAACGGTTTACCGGATGTTGATTCTGTGTATT 903
Query 1045 ATTCCACTAGGAAGACGACTTTCGAACCGTTTGATATCAGATTCGATGAGCATTCTCCTA 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 ATTCCACTAGGAAGACGACTTTCGAACCGTTTGATATCAGATTCGATGAGCATTCTCCTA 963
Query 1105 AAGTGGCGTTGCCTCAAGGTATGATGGTGCCTGTGAATTCGTTTAACACATTGTACCATT 1164
||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 964 AAGTGGCGTTGCCACAAGGTATGATGGTGCCTGTGAATTCGTTCAACACTTTATACCATT 1023
Query 1165 CCTCTGCGTTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCAGATGTGA 1224
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1024 CCTCAGCGTTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCAATGGCTTCGGATGTGA 1083
Query 1225 TTAGAGGTTACTGGGGACAAAGGCTTTTATGGGAGCTTGGTGGTTATGTTGCTGTTTATC 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TTAGAGGTTACTGGGGACAAAGGCTTTTATGGGAGCTTGGTGGTTATGTTGCTGTTTATC 1143
Query 1285 CACCAACTGTTCACCGGTATGATAGAGTCGAAGCTTACCCTTTCTCTGATGAGAAAGATC 1344
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1144 CACCAACTGTTCACCGGTATGATCGAGTCGAAGCTTACCCTTTCTCTGATGAGAAAGATC 1203
Query 1345 TCCATATCAATGTCGGTCGTTTGATCAAATTCTTGCTTGCTTGGAGATCAAATAAGCATA 1404
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TCCACGTCAATGTCGGTCGTTTGATCAAATTCTTGCTTGCTTGGAGATCAAATAAGCATA 1263
Query 1405 GGTTCTTCGAGACGATTCTTGATTTGAGCTTTGTTATGGCTGAACAAGGGTTTTGGACTG 1464
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1264 GGTTCTTCGAGACGATTCTCGATTTGAGCTTTGTTATGGCTGAACAAGGGTTTTGGACAG 1323
Query 1465 AGCTAGATGTGAAATTCACAGCTGCTTGGCTCCAGGATTTGCTTATGGTCGGATACCAGC 1524
| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1324 AACTCGACGTGAAATTCACAGCTGCTTGGCTCCAGGATTTGCTTATGGTCGGATACCAAC 1383
Query 1525 AGCCTCGGTTAATGTCACTTGAGTTGGACCGCCCACGAGCAACCATTGGTCATGGAGATA 1584
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1384 AGCCTCGGTTAATGTCACTTGAGTTGGACCGCCCACGAGCAACCATCGGTCATGGAGATA 1443
Query 1585 GAAAAGAGTTTGTTCCTAGGAAATTGCCTTCGGTTCATCTTGGGGTCGAGGAGATAGGCA 1644
||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1444 GAAAAGAGTTTGTTCCTAGGAAATTGCCTTCAGTTCACCTCGGGGTCGAGGAGATAGGCA 1503
Query 1645 CAGTGAGTTCTGAAATTGGGAACTTGATTAAGTGGAGGAAGAATTTTGGGAATGTAGTGC 1704
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 CAGTAAGTTCTGAAATTGGGAACTTGATTAAGTGGAGGAAGAATTTTGGGAATGTAGTGC 1563
Query 1705 TTATAATGTTCTGTAACGGACCTGTGGAACGTACTGCTCTTGAATGGAGGTTACTTTATG 1764
|||||||||||||||||||||| || ||||| || |||||||||||||| |||||||| |
Sbjct 1564 TTATAATGTTCTGTAACGGACCAGTAGAACGCACCGCTCTTGAATGGAGATTACTTTACG 1623
Query 1765 GGCGGATATTCAAAACCGTGGTCATTTTGTCCTCTCGGAAAAACTCAGACCTTTACGTCC 1824
|||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1624 GGCGAATATTCAAAACCGTGGTCATTTTGTCCTCTCGGAAAGACTCAGATCTTTACGTCC 1683
Query 1825 AAGAAGCTAAACTCGATCACATATACAAGCGGCTACCGAAGATATTTGATCGGTACAGCA 1884
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1684 AAGAAGCTAAACTCGATCACATTTACAAGCGGCTACCGAAGATATTTGATCGGTATAGCA 1743
Query 1885 GCGCTGACGGATTTGTGTTTGTTGAAGATGATACAGTTCTTAATTACTGGAATTTACTTC 1944
|||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1744 GCGCAGACGGATTTTTGTTTGTTGAAGATGATACAATTCTTAATTACTGGAATTTACTTC 1803
Query 1945 AAGCTGACAAAACCAAGCTCTGGACTACAGACAAGGTAACGGAGTCATGGACAACGGTGA 2004
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1804 AAGCCGACAAAACTAAGCTCTGGACTACAGACAAGGTAACGGAGTCATGGACAACAGTGA 1863
Query 2005 GACCAGCCGGGAACT-CGGATTGGTATTCGGTTCAGGCGGAATTAGTCAAGAAAATTGTC 2063
|| |||| ||||| | | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1864 GAGCAGCTGGGAA-TGCTGATTGGTATTCGGTTCAGGCGGAATTAGTAAAGAAAATTGTC 1922
Query 2064 AGTACAATGCCGGTTCATTTCCAAGTCAATTACAAGGAAGCCACAAAGAATAGCGATGGC 2123
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1923 AGTACAATGCCGGTTCATTTCCAAGTCAATTACAAGGAAGCCACAAAGAAGACCGATGAC 1982
Query 2124 ACAAGCTTAACGATGTGCAGCTCGGAAGTTTTCTATGTCCCTAAACGCTTCGTCTCAGAC 2183
| || ||| |||||||||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct 1983 AAAACCTTTTTGATGTGCAGCTCTGAAGTGTTCTATGTCCCTAAACGCTTTGTCTCGGAC 2042
Query 2184 TTTACAGATCTTGTTAATCTCGTTGGTGATATGGATTTGCATTACAAAGTTGCTGTGCCT 2243
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 2043 TTTACAGATCTTGTTAATCTCGTGGGCGATATGGATTTGCATTACAAAGTGGCTGTGCCT 2102
Query 2244 ATGTTCTTCCTATCGATGGATTCGCCTCAGAATTTTGACCCGGTTCTAGGCTCAATGGTA 2303
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2103 ATGTTCTTCCTATCGATGGATTCGCCTCAGAATTTTGACCCGGTCCTAGGCTCGATGGTT 2162
Query 2304 TATAAGTCAGAACCAGCTTCGCTAAACTCTTCTTTGAGTTTGTATTCAGCGGAAGCACCT 2363
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2163 TACAAGTCGGAACCAGCTTCATTAAACTCTTCTTTGAGTTTGTATTCAGCGGAAGCACCT 2222
Query 2364 GCAGTTCATCCTTGGAGCATCTCGAACGAACAAGATTTCATTAAATTGGTGAGGGAGATG 2423
|| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 2223 GCGGTTCATCCTTGGAGCATTTCGAGCGAACAAGATTTCATTAAATTGGTTAGGGAGATG 2282
Query 2424 GCGGAAGGTGATCCGCTATTGATGGAATTGGTATAATGATGAGTCAAAACAAGAGTAAGT 2483
|||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct 2283 GCGGAAGGCGATCCGCTTTTGATGGAATTGGTATAAT-A--AGTCAAAACAAGAGTAAGT 2339
> Ahg483259 jgi|Araly1|483259|fgenesh2_kg.4__2319__AT2G41770.1
Length=2722
Score = 2250 bits (1218), Expect = 0.0
Identities = 1926/2263 (85%), Gaps = 67/2263 (3%)
Strand=Plus/Plus
Query 231 CGATTC-GCTGAACCCAAAATCCTAGATTTCTCTTCATGGGTT-TCCGACAATGTCTAC- 287
|||||| | ||||||||||| |||||||||||| | | |||| || || ||| ||| |
Sbjct 311 CGATTCAG-TGAACCCAAAAACCTAGATTTCTCGAC-TTGGTTCTCTGAGAATCTCT-CT 367
Query 288 AGAATCG-TAATCATCTTC-CTCTTCATCGTCACCGTCGCT-GCT-TTCTTCTTCCTCTA 343
||||| | | || || || ||||| ||||||||| | | | ||| || |||||||||||
Sbjct 368 AGAATTGCT-GTCTTC-TCTCTCTTAATCGTCACCATAG-TAGCTCTT-TTCTTCCTCTA 423
Query 344 CAACACCACCGACACTGCTTCTCTCCTCTGTTTCCAATCCCAATCAACTCAATCTCTTCA 403
||||||||||||||||||||||||||| |||||||| || || |||||||| || |||||
Sbjct 424 CAACACCACCGACACTGCTTCTCTCCTTTGTTTCCAGTCTCAGTCAACTCAGTCGCTTCA 483
Query 404 ATCTCTCACTCGCCCTCAAATCAACTGGAACTCGATCCAAATCGTCTCCGACAAAACCTC 463
||||||| |||||||||||||||| ||||| ||||||| | | ||| ||||||| |||||
Sbjct 484 ATCTCTCTCTCGCCCTCAAATCAAGTGGAATTCGATCCGAGTGGTCCCCGACAAGACCTC 543
Query 464 ACCTTACGCTAGTTTCCGT-ACAGAGAAATGGATCGTTGTGTCGGTGACAAAGCACCCAA 522
|||||||||| ||||| | || ||||||||||| |||||||||||||| ||| ||||||
Sbjct 544 TCCTTACGCTAATTTCC-TGACGGAGAAATGGATTGTTGTGTCGGTGACCAAGTACCCAA 602
Query 523 CAGAGGAGCTCAAAG-GTTTGGTCAAGATTAAAGGATGGCAAGTTCTAGCGATCGGAAAC 581
| ||||||||| ||| | ||||| |||||| |||||||||||||||||||| ||||||
Sbjct 603 CTGAGGAGCTC-AAGAGCTTGGTGAAGATTCGTGGATGGCAAGTTCTAGCGATTGGAAAC 661
Query 582 TCTTTAACACCTAAAGATTGGAATCTCAAAGG-TGCGAT-TTTTCTATCTCTAGATGCTC 639
|| | ||||| || ||||||| ||| ||||| | |||| |||| | ||||| |||||||
Sbjct 662 TCGGTGACACCGAAGGATTGGAGTCTTAAAGGCT-CGATCTTTT-TGTCTCTCGATGCTC 719
Query 640 AAGCTGAGCTT-AATTACCGGA-TTTTGGATCATTTGCCTTATGATTCCTTCGTACGCAA 697
||||||| || ||| | || |||| ||||| |||||||||||||| ||||| || ||
Sbjct 720 AAGCTGA-ATTGGGTTATC-GAGTTTTAGATCACTTGCCTTATGATTCTTTCGTGCGGAA 777
Query 698 AAGTGTCGGTTACTTGTTTGCGATCCAGCATGGTGCAAAGAAGATCTTTGATGCAGATGA 757
||||||||||||||||| ||||||||||| ||||| |||||||||| |||||| |||||
Sbjct 778 GAGTGTCGGTTACTTGTTCGCGATCCAGCACGGTGCGAAGAAGATCTATGATGCGGATGA 837
Query 758 TCGTGGTGAAGTGATTGATGGAGATCTTGGGAAACATTTTGATGTAGAGTTAGTTGGAGA 817
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |
Sbjct 838 TCGTGGTGAAGTGATTGATGGAGATCTAGGGAAGCATTTTGATGTTGAGTTAGTTGGTGT 897
Query 818 AGACGCTAGGCAAGAACCAATCTTACAGTATAGTCACGAAAACCCGAATCGAACTGTGGT 877
||| ||| ||||||||| || || ||||||||||| || ||||| ||| ||||||||||
Sbjct 898 AGATTCTAAGCAAGAACCGATTTTGCAGTATAGTCATGAGAACCCCAATAGAACTGTGGT 957
Query 878 GAATCCGTATATCCATTTCGGGCAACGATCGGTTTGGCCTAGAGGTTTGCCATTAGAGAA 937
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 958 TAATCCTTATATTCATTTCGGGCAACGTTCGGTTTGGCCTAGAGGTTTGCCATTAGAGAA 1017
Query 938 TGTAGGTGAGATCAATCATGAAGAGTATTACACTGAGGTTTTTGGTGGTAAACAGTTTAT 997
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 TGTAGGTGAGATCAATCATGAAGAGTATTACACTGAGGTTTTTGGTGGTAAGCAGTTTAT 1077
Query 998 TCAGCAAGGGATTTCCAACGGTTTGCCGGATGTTGATTCCGTGTATTA-TTCCACTAGGA 1056
|||||||||||||| |||||||| |||||||||||||| |||| ||| ||| |||||||
Sbjct 1078 ACAGCAAGGGATTTCGAACGGTTTACCGGATGTTGATTCGGTGTTTTACTTC-ACTAGGA 1136
Query 1057 AGACGACTTTCGAA-CCGTTTGATATCAGATTCGATGAGCATTCTCCTAAAGTGGCGTTG 1115
| |||||||| ||| || |||||||| || ||||||||||||||||| ||||| || |||
Sbjct 1137 AAACGACTTTAGAAGCC-TTTGATATTAGGTTCGATGAGCATTCTCCGAAAGTTGCTTTG 1195
Query 1116 CCTCAAGGTATGATGGTGCCTGTGAATTCGTTTAACACA-TTGTACCATTCCTCTGCGTT 1174
||||||||| |||||||||| || |||||||||||||| || |||||||| || || ||
Sbjct 1196 CCTCAAGGTGTGATGGTGCCGGTTAATTCGTTTAACACTCTT-TACCATTCGTCGGCCTT 1254
Query 1175 TTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCAGATGTGATT-AGAGGTT 1233
|||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||
Sbjct 1255 TTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTGTATGGCTTCTGATGTG-TTGAGAGGTT 1313
Query 1234 ACTGGGGACAAAGGCTTTTATGGGAGCTTGGTGGTTATGTTGCTGTTTATCCACCAACTG 1293
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 1314 ACTGGGGACAAAGGCTTTTGTGGGAGCTTGGTGGTTATGTTGCTGTTTATCCACCTACGG 1373
Query 1294 TTCACCGGTATGATAGAGTCGAAGCTTACCCTTTCTCT-GATGAGAAAGATCTCCATATC 1352
|||||||| ||||||| |||||||||||||||| | | || ||||| ||||| ||| |
Sbjct 1374 CTCACCGGTTTGATAGAATCGAAGCTTACCCTTT-TGTAGAGGAGAAGGATCTTCATGTT 1432
Query 1353 AATGTCGGTCGTTTGATCAAATTCTTGCTTGCTTGGAGATCAAATAAGCATAGGTTCTTC 1412
||||| |||||||||||||| ||||| ||||||||||||||| | |||||||| |||||
Sbjct 1433 AATGTTGGTCGTTTGATCAAGTTCTTACTTGCTTGGAGATCAGAGAAGCATAGTTTCTTT 1492
Query 1413 GAGACGATTCTTGATTTGAGCTTTGTTATGGCTGAACAAGGGTTTTGGACTGAGCTAG-A 1471
||||| || |||||||||||||||| |||||||||| |||||||||||||||| | || |
Sbjct 1493 GAGACCATCCTTGATTTGAGCTTTGCTATGGCTGAAGAAGGGTTTTGGACTGAAC-AGGA 1551
Query 1472 TGTGAAATTCACAGCTGCTTGGCTCCAGGATTTGCTTA-TGGTCGGATACCAGCAGCCTC 1530
| | |||||||||||||||||||| ||||||||| || || | || ||||| |||||
Sbjct 1552 TTTAAAATTCACAGCTGCTTGGCTTCAGGATTTGATTGCTGTTGGG-TACCAACAGCCGA 1610
Query 1531 GGTTAATGTCACTTGAGTTGGACCGCCCACGAGCAACCATTGGTCATGGAGATAGAAAAG 1590
| || ||||| || || ||||| ||||| ||||||| || |||||||||||||||||||
Sbjct 1611 GATTGATGTCGCTGGAATTGGATCGCCCGCGAGCAAGTATCGGTCATGGAGATAGAAAAG 1670
Query 1591 AGTTTGTTCCTAGGAAATTGCCTTCGGTTCATCTTGGGGTCGAGGAGATAGGCACAGTGA 1650
|||||||||| ||||| ||||||||||||||||| ||||| ||||||| ||||||||||
Sbjct 1671 AGTTTGTTCCAAGGAAGTTGCCTTCGGTTCATCTCGGGGTTGAGGAGACCGGCACAGTGA 1730
Query 1651 GTTCTGAAATTGGGAACTTGATTAAGTGGAGGAAGAATTTTGGGAATGTAGTGCTTATAA 1710
| ||||||| ||||||||||||| |||||||||||||||||||||||| ||||| | |
Sbjct 1731 GCACTGAAATAGGGAACTTGATTAGGTGGAGGAAGAATTTTGGGAATGTTGTGCTGGTTA 1790
Query 1711 TGTTCTGTAACGGACCTGTGGAACGTACTGCTCTTGAATGGAGGTTACTTTATGGGCGGA 1770
|||| |||||||| || || ||||| || || || || |||||||||||||| || ||||
Sbjct 1791 TGTTTTGTAACGGTCCGGTTGAACGCACCGCACTCGAGTGGAGGTTACTTTACGGCCGGA 1850
Query 1771 TATTCAAAACCGTGGTCATTTTGTCCTCTCGGAAAAACTCAGACCTTTACGTCCAAGAAG 1830
|||||||||| || || || ||||| |||| ||| |||||||| || || ||| ||||||
Sbjct 1851 TATTCAAAACTGTTGTGATATTGTCTTCTCAGAAGAACTCAGATCTCTATGTCGAAGAAG 1910
Query 1831 CTAAACTCGATCACATATACAAGCGGCTACCGAAGATATTTGATCGGTACAGCAGCGCTG 1890
| |||||||||||||| ||||||| || ||||||||||||||||| ||||||||||| |
Sbjct 1911 CCAAACTCGATCACATTTACAAGCATCTTCCGAAGATATTTGATCGATACAGCAGCGCAG 1970
Query 1891 ACGGATTTGTGTTTGTTGAAGATGATACAGTTCTTAATTACTGGAATTTACTTCAAGCTG 1950
| |||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1971 AAGGATTTTTGTTTGTTGAAGATGATACAGTTCTCAATTACTGGAATCTACTTCAAGCTG 2030
Query 1951 ACAAAACCAAGCTCTGGACTACAGACAAGGTAACGGAGTCATGGACAACGGTGAGACC-A 2009
|||| | ||| | |||||||||||||||||| | ||||||||||| | |||| ||| |
Sbjct 2031 ACAAGTCGAAGATTTGGACTACAGACAAGGTATCAAAGTCATGGACATCAGTGAAACCGA 2090
Query 2010 GCCGGGAAC-TCGGATTGGTATTCGGTTCAGGCGGAATTAGTCAAGAAAATTGTCAGTAC 2068
|||| ||| || ||||||| ||| || || || || ||||| ||||||| ||| | |||
Sbjct 2091 -CCGG-AACCTCTGATTGGTTTTCTGTACAAGCAGAGTTAGTGAAGAAAACTGTAAATAC 2148
Query 2069 AATGCCGGTTCATTTCCAAGTCAATTACAAGGAAGCCACAAAGAATAG-CGATG-GCACA 2126
|||||| | |||||| ||||| || |||||||| ||||| ||||| | | ||| | ||
Sbjct 2149 AATGCCAGCTCATTTTCAAGTTAACTACAAGGACGCCACCAAGAACAATC-ATGAG-AC- 2205
Query 2127 AGCTTAAC-GATGTGCAGCTCGGAAGTTTTCTATGTCCCTAAACG-CTTCGTCTCAGACT 2184
|||||| | | ||||| || || || ||||| || |||||||| || || | ||||
Sbjct 2206 --CTTAACAGTT-TGCAGTTCAGAGGTATTCTACGTGCCTAAACGACTA-GTAACTGACT 2261
Query 2185 TTA-CAGATCTTGTTAATCTCGTTGGTGATATGGATTTGCATTACAAAGTTGCTGTGCCT 2243
||| | ||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 2262 TTATC-GATCTTGTTGATCTCGTGGGTGATATGGACTTGCATTACAAAGTGGCTGTGCCA 2320
Query 2244 ATGTTCTTCCTATCGATGGATTCGCCTCAGAATTTTGACCCGGTTCTAGGCTCAATGGTA 2303
||||||||| | ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 2321 ATGTTCTTCTTGTCGATGGATTCGCCTCAGAATTTTGACCCGGTTCTTGGTTCAATGGTA 2380
Query 2304 TATAAGTCAG-AAC-CAGCTTCGCTAAACTCTTCTTTGAGTTTGTATTCAGCGGAAGCAC 2361
|||||| || || |||||||| | ||| |||||| |||| ||||||| ||| ||||||
Sbjct 2381 TATAAG--AGGAAATCAGCTTCGTTTAACACTTCTTCGAGTCTGTATTCTGCGAAAGCAC 2438
Query 2362 CTGCAGTTCATCCTTGGAGCATCTCGAA-CGAACAAGATTTCATTAAATTGGTG-AGGGA 2419
|||| ||||| || ||||| || || || ||||||||||||||| |||||||| || |
Sbjct 2439 CTGCGGTTCACCCGTGGAGTATATC-AAGCGAACAAGATTTCATCAAATTGGTTCAGCAA 2497
Query 2420 GATGGCGGAAGGTGATCCGCTAT-TGATGGAATTGGTATAATG 2461
||||| || || || ||||| | ||||||||||||||| |||
Sbjct 2498 -ATGGCTGAGGGCGACCCGCT-TCTGATGGAATTGGTATGATG 2538
> Ahg935009 jgi|Araly1|935009|scaffold_402997.1
Length=409
Score = 405 bits (219), Expect = 8e-112
Identities = 312/357 (87%), Gaps = 6/357 (2%)
Strand=Plus/Plus
Query 667 ATCATTTGCCTTATGATTCCTTCGTACGCAAAAGTGTCGGTTACTTGTTTGCGATCCAGC 726
|||| |||||||||||||| ||||| || || ||||| ||||||||||| ||||| ||||
Sbjct 34 ATCACTTGCCTTATGATTCTTTCGTGCGGAAGAGTGTTGGTTACTTGTTCGCGATACAGC 93
Query 727 ATGGTGCAAAGAAGATCTTTGATGCAGATGATCGTGGTGAAGTGATTGATGGAGATCTTG 786
| ||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 94 ACGGTGCGAAGAAGATCTACGATGCGGATGATCGTGGTGAAGTGATTGATGGAGATCTAG 153
Query 787 GGAAACATTTTGATGTAGAGTTAGTTGGAGAAGACGCTAGGCAAGAACCAATCTTACAGT 846
|||| ||||||||||| ||||||||||| | ||| ||| |||| |||| || || ||||
Sbjct 154 GGAAGCATTTTGATGTTGAGTTAGTTGGTGTAGATTCTAAGCAACAACCTATTTTGCAGT 213
Query 847 ATAGTCACGAAAAC-CCGAATCGAACTGTGGTGAATCCGTATATCCATTTCGGGCAACGA 905
||||||| || ||| || ||| | |||||||| ||||| ||||| ||||||||||||| |
Sbjct 214 ATAGTCATGAGAACTCC-AATAGGACTGTGGTTAATCCTTATATTCATTTCGGGCAAC-A 271
Query 906 -TCGGTTTGGCCTAGAGGTTTGCCATTAGAGAATGTAGGTGAGATCAATCATGAAGAGTA 964
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 272 CTCGGTTTGGCCTAGAGGATTGCCATTAGAGAATGTAGGTGAGATCAATCATGAGGAGTA 331
Query 965 TTACACTGAGGTTTTTGGTGGTAAACAGTTTATTCAGCAAGGGA-TTTCCAACGGTT 1020
||||||||||||||||||||||| |||||||| ||||| |||| |||| || ||||
Sbjct 332 TTACACTGAGGTTTTTGGTGGTACGCAGTTTATACAGCA-GGGAATTTCTAATGGTT 387
> Ahg935010 jgi|Araly1|935010|scaffold_402998.1
Length=737
Score = 200 bits (108), Expect = 4e-50
Identities = 129/139 (93%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 1173 TTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCAGATGTGATT-AGAGG 1231
|||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||
Sbjct 10 TTTTGGGGGTTAATGCTTCCTGTTTCGGTTAGTTCCATGGCTTCTGATGTG-TTGAGAGG 68
Query 1232 TTACTGGGGACAAAGGCTTTTATGGGAGCTTGGTGGTTATGTTGCTGTTTATCCACCAAC 1291
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 69 TTACTGGGGACAAAGGCTTCTGTGGGAGCTTGGTGGTTATGTTGCTGTTTATCCACCTAC 128
Query 1292 TGTTCACCGGTATGATAGA 1310
| |||||| | |||||||
Sbjct 129 GGCTCACCGATTTGATAGA 147
> Ahg935008 jgi|Araly1|935008|scaffold_402996.1
Length=244
Score = 110 bits (59), Expect = 7e-23
Identities = 114/139 (82%), Gaps = 10/139 (7%)
Strand=Plus/Plus
Query 231 CGATTC-GCTGAACCCAAAATCCTAGATTTCTCTTCATGGGTT-TCCGACAATGTCTACA 288
|||||| | ||||||||||| |||||||||||| | | |||| || || ||| ||| ||
Sbjct 111 CGATTCAG-TGAACCCAAAAACCTAGATTTCTCGAC-TTGGTTCTCTGAGAATCTCTCCA 168
Query 289 GAATCG-TAATCATCTTC-CTCTTCATCGTCACCGTCGCT-GCTTTCTTCTTCCTCTACA 345
|||| | | || || || ||||| ||||||||| | | | ||| |||||||||||||||
Sbjct 169 GAATTGCT-GTCTTC-TCTCTCTTAATCGTCACCATAG-TAGCTCTCTTCTTCCTCTACA 225
Query 346 ACACCACCGACACTGCTTC 364
|||||||||||||||||||
Sbjct 226 ACACCACCGACACTGCTTC 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99758351655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5