BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57440.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938724 jgi|Araly1|938724|scaffold_502915.1 1234 0.0
> Ahg938724 jgi|Araly1|938724|scaffold_502915.1
Length=768
Score = 1234 bits (668), Expect = 0.0
Identities = 735/768 (96%), Gaps = 2/768 (0%)
Strand=Plus/Plus
Query 34 TCGGAAGAAGAACTCAGTA-ATGGCGACGTATCCTTCTGTGATTGAGAGAACCGTTGCTT 92
||||||||| ||||||| | ||||||| | ||||||||| |||||||||| | || ||||
Sbjct 2 TCGGAAGAATAACTCAG-AGATGGCGAAGCATCCTTCTGCGATTGAGAGATCAGTGGCTT 60
Query 93 CGTCTCTTCTTCTCCTTTCCTATGGACCAGTGTTCTTCTCACCTAAAAGGTCGGAATCTG 152
|||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||
Sbjct 61 CGTCTCTTCTTCTCCTTTCCTATGGACCTGTGGTCTTCTCACCCACAAGGTCGGAATCTG 120
Query 153 TAGAGGAATCGAGCTATGTGAGGAAGTGGTGTCACGAAGGAAGTTCGAACTTGAGCTTGA 212
|||||||||||||||||||||||||||||||| ||||||| || |||||| |||||||||
Sbjct 121 TAGAGGAATCGAGCTATGTGAGGAAGTGGTGTGACGAAGGTAGCTCGAACCTGAGCTTGA 180
Query 213 TGTTGGGATCTAGCGGATCGAGATCTTGTGGCTCGGCTTTGTCCAGCGATGGTTCGTTTG 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTTGGGATCTAGCGGATCGAGATCTTGTGGCTCGGCTTTGTCCAGCGATGGTTCGTTTG 240
Query 273 GGATGAGTGAGGATCGCGAATTCAAAATCAATTATACTGGAGATCCGTTTCGTCTCATGA 332
||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 GGATGAGCGAGGATCGCGGATTCAAAATCAATTATACTGGAGATCCGTTTCATCTCATGA 300
Query 333 ATTTCAAGACAGCGAGAAAACGCCGTTCTCAGGTCATTTGGGGATCCTTCAACTTTAAGC 392
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 301 ATTTCAAGACAGCGAGAAAACGCCGATCTCAGGTCATTTGGGGATCCTTCAATTTTAAGC 360
Query 393 CAACACATTTGAAGATGAATCCTGTGTGTGATGTTCTCTCAACATGCTCTGTTGATTCCA 452
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 361 CAACACATTTGATGATGAATCCTGCGTGTGATGTTCTCTCAACATGCTCTGTTGAATCCA 420
Query 453 AAGATGAGTCATGTTTGTCAACTGGTTCAAGCGAGGTTTCTAGCGTAGAAAGCAGAATCA 512
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGATGAGTCATGCTTGTCAACTGGTTCAAGCGAGGTTTCTAGCGTAGAAAGCAGAATCA 480
Query 513 AAGTCAGGAATCAGAAAAGCAATGAGAAACTTAGAGGAGGAGGGAAGACGATGAAAGAAA 572
|||||||||||||||||||||||||||| || ||||||| |||||||| |||||||||||
Sbjct 481 AAGTCAGGAATCAGAAAAGCAATGAGAAGCTAAGAGGAGTAGGGAAGAAGATGAAAGAAA 540
Query 573 GTAGCAGGTCAAGTTCTATTCGCCGTAGAGCCAAAGACATCTTGGAGTTTCTTTCCTCTG 632
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTAGCAGGTCGAGTTCTATTCGCCGTAGAGCCAAAGACATCTTGGAGTTTCTTTCCTCTG 600
Query 633 AATCTTCTTCAGAAGTTCACATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAG 692
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCTTCTTCCGAAGTTCATATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAG 660
Query 693 CTCTCAGAATGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTG 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTCTCAGAATGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTG 720
Query 753 ATCCCTTTATTTACAAGATTGCATGAAAGATTAAGACATTAATGCTGG 800
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATCCCTTTATTTACAAGATTGCATGAAAGATTAAGACATTAATGCTGG 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5