BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57450.1
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486190 jgi|Araly1|486190|fgenesh2_kg.5__2182__AT3G57450.1 863 0.0
> Ahg486190 jgi|Araly1|486190|fgenesh2_kg.5__2182__AT3G57450.1
Length=639
Score = 863 bits (467), Expect = 0.0
Identities = 611/673 (91%), Gaps = 40/673 (6%)
Strand=Plus/Plus
Query 1 ATCGTCTCCGT-CTCCTCTCTCTCTATCCACGAGAAAGAGCAGaaaaaaaaCATATAGAA 59
||||||||||| || |||||||||| | ||||||||||||||| ||| |||| |||| |
Sbjct 1 ATCGTCTCCGTCCT-CTCTCTCTCTCTTCACGAGAAAGAGCAG--AAATAACAAATAG-A 56
Query 60 AAGAAGAATTTAGATACAATAGATTCTTCAAGGAAATGGGGAAATACACGGAGATGTTGG 119
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 AAGAAGAA-TTAGAAACAATAGATTCTTCAAGGAAATGGGGAAATACACGGAGATGTTGG 115
Query 120 ACGTCGGCGTGAGAATCGCTGCGAGGTTTCATTCACACTGTCCTCAGACGGCTCGTCTTT 179
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 116 ACGCCGGCGTGAGAATCGCGGCGAGGTTTCATTCACACTGTCCTCAGACGGCTCGTCTTT 175
Query 180 ATTACCATCCTCCATCCGACAACCATCACCATCACGGCGGAGTCAAAGATTTAATCGGAG 239
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 176 ATTACCATCCTCCATCCGACGGCCATCACCATCACGGCGGAGTCAAAGATCTAATCGGAG 235
Query 240 GTGGTGGGGTTCTTGGG-TCAGGTCAAAATTCGACCGGTTTGGTTGGTGGTTTAGGAACC 298
||||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 236 GTGGTGGGGTT-TTGGGGTCGGGTCAAGATTCGACCGGTTTGGTTGGTGGTTTAGGAACC 294
Query 299 GGAACCGGAACTACTGGTGGTTGCGGTATCAAATCTTCTCAAGTG-TATGATGACGCTAG 357
||||| |||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 295 GGAAC------TACTGGTGGTTGCGGTATCAAATCTTCTCAAG-GATACGATGACGCTAG 347
Query 358 AGATCTCTTGTTATTCTCTGTTGTTTGATTTAATTTATTTGACGAACACAAAAAATTATT 417
|||||||||||||||||||||| |||||||||||| |||||||||| | | |||
Sbjct 348 AGATCTCTTGTTATTCTCTGTTATTTGATTTAATT-ATTTGACGAA-A-------T-ATT 397
Query 418 ATAAtttttttGGTTGGTGTTGGAGAGAGATTTCATGAGCGTTTGGTTGTG-TTTTC-AA 475
|||||||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 398 -----------GGTTGGTGCGGGAGAGAGATTTCATGAGCGTTTGGTTGTGCTTTTTTAA 446
Query 476 TTATTATTGAGAAAATTGTATGTTCTTGAGAGGATTTGTGATACTATTTAATCATCTCTG 535
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TTATTATTGAGAAAACTGTATGTTCTTGAGAGGATTTGTGATACTATTTAATCATCTCTG 506
Query 536 GATTCCAAAAATTTCTGGGGATTATTGGATGTTGATGAGAAATTAA-TTTGATTCATTAT 594
|||||||||| ||||||||||| | ||||||||||||||||||||| ||||||| |||||
Sbjct 507 GATTCCAAAATTTTCTGGGGATAAATGGATGTTGATGAGAAATTAAATTTGATTAATTAT 566
Query 595 TTTTGTTTGACTTCGTTCGGATTTAGGTTGCCGCATCTTTGGTTTAAACCCTAAATTTAT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TTTTGTTTGACTTCGTTCGGATTTAGGTTGCCGCATCTTTGGTTTAAACCCTAAATTTAT 626
Query 655 TGTCGAAGACTTT 667
|||||||||||||
Sbjct 627 TGTCGAAGACTTT 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25313616888
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5