BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57480.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486194 jgi|Araly1|486194|fgenesh2_kg.5__2186__AT3G57480.1 1343 0.0
> Ahg486194 jgi|Araly1|486194|fgenesh2_kg.5__2186__AT3G57480.1
Length=967
Score = 1343 bits (727), Expect = 0.0
Identities = 800/834 (96%), Gaps = 9/834 (1%)
Strand=Plus/Plus
Query 216 TCGAAAGCTCGGTCTCAACAATGGGAACTCCAGAATTTCCAGATCT-GGGTAAACACTGC 274
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 136 TCGAAAGCTCGGTCTCAACAATGGGGACTCCAGAATTTCCAGATCTAGGG-AAACACTGC 194
Query 275 TCCGTCGATTATTGCAAACAGATCGATTTCTTGCCCTTCACATGCGATCGCTGCCTTCAG 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 TCCGTCGATTATTGCAAACAGATCGATTTCTTGCCCTTCACATGCGATCGCTGCCTTCAG 254
Query 335 GTGTATTGTCTGGATCATCGTAGCTATATGAAACACGATTGTCCAAAAGGAAACAGAGGA 394
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GTGTTTTGTCTGGATCATCGTAGCTATATGAAACACGATTGTCCAAAAGGAAACAGAGGA 314
Query 395 GATGTCACTGTGGTTATTTGTCCATTATGTGCTAAAGGAGTTAGATTAAACCCTGACGAA 454
||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct 315 GATGTCACTGTGGTTATCTGTCCTTTATGTGCTATAGGAGTTAGATTAAACCCTGACGAA 374
Query 455 GATCCCAACATCACCTGGGAGAAACATGTTAATACAGACTGTGATCCATCTAACTACGAA 514
||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 375 GATCCCAACATTACCTGGGAGAAACATGTTAATACAGATTGTGATCCCTCTAACTACGAA 434
Query 515 AAAGCTGTCAAGAAGAAGAAATGTCCTGTTCCTAGATGCAGAGAACTCTTGACATTCTCC 574
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AAAGCTGTCAAGAAGAAGAAATGTCCTGTTCCTAGATGCAGAGAACTCTTGACATTCTCT 494
Query 575 AATACTATTAAATGTCGAGATTGTAGCATCGATCATTGTTTGAAACATCGGTTTGGACCT 634
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 495 AACACTATAAAATGTCGAGATTGCAGCATCGATCATTGTTTGAAACATCGGTTTGGACCT 554
Query 635 GATCATAGTTGTTCTGGACCCAAGAAGCCTGAATCGAGTTTCTCATTCATGGGTTTCTTG 694
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 555 GATCATAGTTGTTCTGGACCCAAGAAGCCTGAGTCGAGTTTCTCATTCATGGGTTTCTTG 614
Query 695 AGTACAAACACAAAAGAAGCTCCT---GCATCATCATCA---TCTTCTTCGAGATGGTCT 748
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 615 AGTACAAACACAAAAGAAGCTCCTCCACCATCATCATCATCGTCTTCTTCGAGATGGTCT 674
Query 749 AGTCTTTTCGCTTCTGCGGAAGCAAGTATTAGTAGACTCGGTAACGATATAAGCCAGAAG 808
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 675 AGTCTTTTCGCTTCTGCGGAAGCAAGTATAAGCAGACTCGGTAACGATATTAGCCAGAAG 734
Query 809 TTACAGTTTGCGAGTGGCAATGATGGCAATTCAGAGAAAACGCAAGAGAGGAATGGAAAA 868
||||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||||
Sbjct 735 TTACAGTTTGCGAGTGGTAGTGATGGTAATTCAGGGAAAACGCAAGAGAGGAATGGAAAA 794
Query 869 CAGAATTGTGGCAAAGTTACGGTTGATGTTTGTCCCAAATGTAGTAGAGGGTTTCGTGAT 928
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 795 CAGAATTGTGGCAAAGTTACAGTTGATGTTTGTCCTAAATGTAGCAGAGGGTTTCGTGAT 854
Query 929 CCGGTGGATCTATTGAAGCATATCGATAAGGATCATCGTGGCACTTCTAAAGCCTAGAAG 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 CCGGTGGATCTATTGAAGCATATCGATAAGGATCATCGTGGCACTTCTAAAGCCTAGAAG 914
Query 989 AAAGGAAGTGGTTTTATATTTGTGTGATTTGTATCATTCTTTGTAACACAGCCA 1042
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 915 AAGGGAAGTGGTTTTATATTTGTGTGATT-GTATCATTCTTTGTAACACAGCCA 967
Score = 135 bits (73), Expect = 5e-31
Identities = 118/137 (86%), Gaps = 14/137 (10%)
Strand=Plus/Plus
Query 2 GGAATGACGTTGACTTTCCTTTACAAATTTCTTCTTCTTCTTCCTTGCCCGAGTTTTTCT 61
||||||||||||||||||||||||||| | |||||||| ||| | ||||||
Sbjct 1 GGAATGACGTTGACTTTCCTTTACAAA-----T-TTCTTCTT-CTT---C----TTTTCT 46
Query 62 GTTGATCTAAATTCTCGGAATCTGGGGATTTTCTTTTCCCGGTGTGTCTATCTCGCCGGG 121
||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 47 GTTCATCTAAATTTTCGGAATCTGGGGATTTTCTTTTCCCGGTGTATCTCTCTCGCCGGG 106
Query 122 AAACTCTAATAAACCAT 138
|||||||||| ||||||
Sbjct 107 AAACTCTAATTAACCAT 123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5