BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57490.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938731 jgi|Araly1|938731|scaffold_502922.1 1314 0.0
Ahg483266 jgi|Araly1|483266|fgenesh2_kg.4__2326__AT2G41840.1 721 0.0
> Ahg938731 jgi|Araly1|938731|scaffold_502922.1
Length=860
Score = 1314 bits (711), Expect = 0.0
Identities = 797/838 (95%), Gaps = 8/838 (1%)
Strand=Plus/Plus
Query 80 GAACGTGGTGGAGATCGCGGCGATTTCGGACGTGGATTCGGTGGTCGCGGCGGTGGAAGA 139
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 27 GAACGTGGTGGTGATCGCGGCGATTTCGGACGTGGATTCGGCGGTCGCGGCGGTGGAAGA 86
Query 140 GGTGGTCCGAGAGGTCGTGGTCGCCGTGCAGGTCGTGCTCCAGAGGAGGAGAAATGGGTG 199
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 GGTGGTCCGAGAGGCCGTGGTCGCCGTGCAGGTCGTGCTCCAGAGGAGGAGAAATGGGTG 146
Query 200 CCAGTGACTAAGCTTGGTCGTCTCGTAAAGGAAGGTAAGATCACAA-AGATTGAGCAGAT 258
||||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||
Sbjct 147 CCAGTGACTAAGCTTGGTCGTCTTGTAAAGGAAGGTAAGATCA-AACAGCTTGAGCAGAT 205
Query 259 CTACCTCCATTCTCTCCCAGTCAAGGAGTACCAGATCATAGATTTACTCGTCGGTCCTTC 318
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 206 CTACCTCCATTCTCTCCCAGTCAAGGAGTACCAGATCATAGATTTACTCGTCGGCCCTTC 265
Query 319 ATTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAAAAACAAACCAGAGCCGGTCAGAG 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 ATTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAAAAACAAACCAGAGCCGGTCAGAG 325
Query 379 AACGAGATTCAAGGCCTTCATCGTCGTCGGAGATAGTAACGGTCACGTCGGATTAGGAGT 438
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct 326 AACGAGATTCAAGGCCTTCGTCGTCGTTGGAGATAGTAACGGTCACGTTGGATTAGGAGT 385
Query 439 CAAATGCTCCAAGGAAGTTGCGACGGCGATCAGAGGCGCGATCATTCTCGCGAAATTGTC 498
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 386 GAAATGCTCAAAGGAAGTTGCGACGGCGATCAGAGGCGCGATTATTCTCGCGAAATTGTC 445
Query 499 TGTGGTTCCGATACGAAGAGGTTATTGGGGTAACAAGATTGGAAAACCACATACGGTTCC 558
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 446 TGTGGTTCCGATTCGAAGAGGTTACTGGGGTAACAAGATCGGAAAACCACATACGGTTCC 505
Query 559 GTGTAAGGTAACCGGGAAATGTGGATCTGTTACTGTACGTATGGTTCCAGCTCCGAGAGG 618
|||||| ||||| || ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 506 GTGTAAAGTAACTGGAAAATGTGGATCTGTTACCGTACGTATGGTTCCAGCTCCAAGAGG 565
Query 619 TTCTGGTATTGTGGCGGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCTGGAATTGATGA 678
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 566 TTCTGGTATTGTGGCCGCTAGAGTTCCTAAGAAGGTTCTTCAATTCGCCGGAATTGATGA 625
Query 679 TGTCTTTACTTCTTCTAGAGGATCCACCAAAACTCTTGGAAACTTCGTCAAGGCAACATT 738
|||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 626 TGTCTTCACTTCTTCTAGAGGATCCACGAAAACACTTGGAAACTTCGTTAAGGCAACATT 685
Query 739 TGATTGTCTGCAGAAGACATACGGATTCCTTACACCGGAATTCTGGAAAGAGACGAGATT 798
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TGATTGTCTTCAAAAGACTTACGGATTCCTTACACCGGAATTCTGGAAAGAGACGAGATT 745
Query 799 CTCAAAATCACCATACCAAGAGCACACTGATTTCTTGCTTATACCTCCTGGCGTCAAGAT 858
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 746 CTCAAAATCACCATACCAAGAGCACACTGATTACTTGCTTACGCCTCCTGGCGTCAAGAT 805
Query 859 CAGCGAGGTTGTTGTAGACAAAAGCGTAG-AG--TAATACCACTTTATCTTGTTACAT 913
||| |||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 806 CAGGGAGGTTGT---AGACAAAAGCGTAGTAGAGTAATACCACTTTATCTTGTTACAT 860
> Ahg483266 jgi|Araly1|483266|fgenesh2_kg.4__2326__AT2G41840.1
Length=1161
Score = 721 bits (390), Expect = 0.0
Identities = 656/783 (84%), Gaps = 24/783 (3%)
Strand=Plus/Plus
Query 68 GAACGTGGTGTCGAACGTGGTGGAGATCGCGGCGATTTCGGACGTGGATTC---GGTGGT 124
||||||||||| || ||||||||||| || || | | ||||||||||||| || ||
Sbjct 149 GAACGTGGTGTTGAGCGTGGTGGAGAACGTGGTGGTCACGGACGTGGATTCGGAGGAGGC 208
Query 125 CGCGGCG---GTGGAAGAGGTGGTC-CGAGAGGTCGTGGTCGCCGTGCAGGTCGTGCTCC 180
|| || | ||||| | |||| | || |||| |||||||| |||| ||| ||| ||
Sbjct 209 CGTGGAGATCGTGGAGGCCGTGGACGCG-GAGGCCGTGGTCGACGTGGAGGCCGT--ACC 265
Query 181 A--GAGGAGGAGAAATGGGTGCCAGTGACTAAGCTTGGTCGTCTCGTAAAGGAAGGTAAG 238
| || || ||||||||||| |||||||| ||||||||||||||||| ||| ||| ||
Sbjct 266 AGTGAAGAAGAGAAATGGGTTCCAGTGACCAAGCTTGGTCGTCTCGTGGCGGACGGT-AG 324
Query 239 -ATCACA-AAGATTGAGCAGATCTACCTCCATTCTCTCCCAGTCAAGGAGTACCAGATCA 296
|||| | |||| ||||||||||| || ||||| ||||| || |||||||| |||||||
Sbjct 325 AATCA-AGCAGATAGAGCAGATCTATCTTCATTCACTCCCGGTTAAGGAGTATCAGATCA 383
Query 297 TAGATTTACTCGTCGGTCCTTCATTGAAAGACGAAGTGATGAAAATCATGCCGGTTCAAA 356
| ||| | ||| ||||||| | ||||| || || |||||||| |||||||||||||| |
Sbjct 384 TTGATATGCTCATCGGTCCAACCTTGAAGGATGAGGTGATGAAGATCATGCCGGTTCAGA 443
Query 357 AACAAACCAGAGCCGGTCAGAGAACGAGATTCAAGGCCTTCATCGTCGTCGGAGATAGTA 416
||||||||||||| ||||||||||| |||||||||||||| | ||||| |||||| |||
Sbjct 444 AACAAACCAGAGCTGGTCAGAGAACTAGATTCAAGGCCTTTGTTGTCGTTGGAGATGGTA 503
Query 417 ACGGTCACGTCGGATTAGGAGTCAAATGCTCCAAGGAAGTTGCGACGGCGATCAGAGGCG 476
| ||||| || ||||| ||||| |||||||| ||||||||||| |||||||| ||||| |
Sbjct 504 ATGGTCATGTTGGATTGGGAGTGAAATGCTCTAAGGAAGTTGCTACGGCGATTAGAGGAG 563
Query 477 CGATCATTCTCGCGAAATTGTCTGTGGTTCCGA-T-ACGAAGAGGTTATTGGGGTAACAA 534
|||| |||||||| || |||||||| ||||| | | | | |||||||| |||||||||||
Sbjct 564 CGATTATTCTCGCTAAGTTGTCTGTTGTTCC-AGTGA-GGAGAGGTTACTGGGGTAACAA 621
Query 535 GATTGGAAAACCACATACGGTTCCGTGTAAGGTAACCGGGAAATGTGGATCTGTTACTGT 594
|||||| || ||||| |||||||| |||||||| || || || ||||||||||| || ||
Sbjct 622 GATTGGGAAGCCACACACGGTTCCTTGTAAGGTGACTGGCAAGTGTGGATCTGTGACAGT 681
Query 595 -ACGTATGGTTCCAGCTCCGAGAGGTTCTGGTATTGTGGCGGCTAGAGTTCCTAAGAAGG 653
| | |||||||||||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct 682 GA-GGATGGTTCCAGCTCCTAGAGGTGCGGGTATTGTGGCTGCTAGAGTTCCTAAGAAGG 740
Query 654 TTCTTCAATTCGCTGGAATTGATGATGTCTTT-ACTTCTTCTAGAGGATCCACCAAAACT 712
|||||||||||||||||||||||||||| ||| ||||| || || ||||| |||||||||
Sbjct 741 TTCTTCAATTCGCTGGAATTGATGATGT-TTTCACTTCCTCCAGGGGATCTACCAAAACT 799
Query 713 CTTGGAAACTTCGTCAAGGCAACATTTGATTGTCTGCAGAAGACATACGGATTCCTTACA 772
|| ||||||||||||||||| ||||| ||||| || |||||||| || |||||||||||
Sbjct 800 CTCGGAAACTTCGTCAAGGCTACATTCGATTGCCTTCAGAAGACTTATGGATTCCTTACC 859
Query 773 CCGGAATTCTGGAAAGAGACGAGATTCTCAAAATCACCATACCAAGAGCACACTGATTTC 832
|| || ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 860 CCAGAGTTCTGGAAAGAGACGAGGTTCTCTAAATCACCATACCAAGAGTACACTGATTTC 919
Query 833 TTG 835
|||
Sbjct 920 TTG 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5