BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57500.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486196 jgi|Araly1|486196|fgenesh2_kg.5__2188__AT3G57500.1 560 5e-159
> Ahg486196 jgi|Araly1|486196|fgenesh2_kg.5__2188__AT3G57500.1
Length=657
Score = 560 bits (303), Expect = 5e-159
Identities = 439/499 (88%), Gaps = 31/499 (6%)
Strand=Plus/Plus
Query 22 TAAAGTCGATATAATTAACCCCACTCTCTCTACTTCAATCAAGTCTTAAACCTTTGCTCC 81
|||||||||||||||||||| || |||||||| | ||||||||||||||||||||||
Sbjct 1 TAAAGTCGATATAATTAACCTCA--CTCTCTAC-T---TCAAGTCTTAAACCTTTGCTCC 54
Query 82 CACAAGCTCACCTGAAActctctctcttcctcttctcacactgtctctctcATGTTCGGA 141
||||||||||||||||| ||| ||| | || |||||||||||||||||
Sbjct 55 CACAAGCTCACCTGAAA------------CTC-TCT-A-TCT-TCTCTCTCATGTTCGGA 98
Query 142 GCCACGGCAAGGCTCGATGACCAACTCAG-----C-ACCACACCAACCACCATTTATATA 195
| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 99 GTCACGGCAAGGCTCGATGACCAACTCAGCACCACAACCACACCAACCACCATTTACATA 158
Query 196 GACCCACCCTCCCAAGACCAGCCGAGTCACAACTCGGACCACCGTTCAATAGAAACACTC 255
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 159 GACCCACCCTCCCAAGACCAGCCGAGTCTCAACTCGGACCACCGTTCAATAGAAACACTC 218
Query 256 GTTGTTGTCTTAGCCGTCATCACCATTTTATCCGTCTTAGCCGGCGTTTTCGCTCGGCTT 315
|| || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 219 GTCGTCGTCTTAGCCGTCATCACCATTTTATCTGTCTTAGCCGGCGTGTTCGCTCGGCTT 278
Query 316 TGTGGCGGTCGCCACTTATCTCACGGCGGAGACCACGACATCGAAGGTTGGGTCGAGAGA 375
|||||||| || || |||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 279 TGTGGCGGCCGTCATTTATCTGACGGCGGAGACCACGACATCGAAGGTTGGGTTGAGAGA 338
Query 376 AAGTGTCGTAGCTGCATCGATGCCGGCATTCCTGCCGTATCCGCTGCTCCTTCACCTCCA 435
||||||||||||||||| |||||||| |||| | || |||| |||||| |||||||
Sbjct 339 AAGTGTCGTAGCTGCATTGATGCCGGTGTTCCCACTGTCGCCGCCGCTCCTCCACCTCC- 397
Query 436 CCGCCGCCACCGCCAGCAACGGCGGAAGAGCGGAGTAAGCCAGCAGCCGAGGAGCAAACC 495
|||||||||| ||||| |||||||||||| |||||||||||||||||| || ||||||
Sbjct 398 --GCCGCCACCGGCAGCAGCGGCGGAAGAGCAGAGTAAGCCAGCAGCCGATGATCAAACC 455
Query 496 AAGAAGTGAAGTaaaaaaa 514
|||||||||||||||||||
Sbjct 456 AAGAAGTGAAGTAAAAAAA 474
Score = 255 bits (138), Expect = 2e-67
Identities = 170/185 (92%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 561 CATTAATTTTGAAAACATGTTCCtttttttGTTATGTACCTT-AGTCTACGGACATTGAT 619
||||||||| || |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 475 CATTAATTTCGAGGACATCTTCCTTTTTTTGTTATGTACCTTAAGTCTACGGACATTGAT 534
Query 620 TTCGGAATTTCCTCAGATGTTTTATGATTATTTATGTCTTTCAAAAGAAAGAACAAAAGC 679
|||||||||||||| |||||||| |||||||| || ||||||||||||||||| |||||
Sbjct 535 TTCGGAATTTCCTCGGATGTTTTCTGATTATT-ATTTCTTTCAAAAGAAAGAA-AAAAGT 592
Query 680 AAAGTTCTTTGTCAACTTTTAACTTTAAATAAATCCGTTGAGATTAAAGAGCAACGGCAT 739
|||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 593 AAAGTTCTTTGTGTACTTTTAACTTTAAATAAATCCGTTGAGATTAGAGACCAACGGCAT 652
Query 740 TAACC 744
|||||
Sbjct 653 TAACC 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5