BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57510.1
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486197 jgi|Araly1|486197|fgenesh2_kg.5__2189__AT3G57510.1 2248 0.0
> Ahg486197 jgi|Araly1|486197|fgenesh2_kg.5__2189__AT3G57510.1
Length=1584
Score = 2248 bits (1217), Expect = 0.0
Identities = 1493/1618 (92%), Gaps = 52/1618 (3%)
Strand=Plus/Plus
Query 1 TCATATTACACAATCCCAAA-CAAGACAGGCAAACATTCTCATCTCACTCACAAGAAAAC 59
|||||||||| ||||||||| ||| || |||||||||||||||| ||||||||| ||||
Sbjct 1 TCATATTACATAATCCCAAATAAAG-CA-GCAAACATTCTCATCTTACTCACAAGGAAAC 58
Query 60 AGCACACATTCTTTTTTCTGCAAAACCGATCAAAATCGAAATGGCCCGTTGTTGCAGACA 119
| ||| ||||| ||||| | || | | |||||||||||||||||||||||
Sbjct 59 AACACTCATTC-TTTTT-T----AA---A-C-----CGAAATGGCCCGTTGTTGCAGACT 103
Query 120 TCTTGCTGTTTTCTTATGCGTTCTTTTGATGCTCTCGTTGTGTAAAGCTTTGAGTAGCAA 179
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 104 TCTTGCTGTTTTCTTATGCGTTCTTTTGATGCTCTCTTTGTGTGAAGCTTTGAGTAGCAA 163
Query 180 CGTTGATGATGGATATGGTCATGAAGATGGAAGTTTTGAATCCGATAGCTTGCTCAAGCT 239
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 164 CGTTGATGATGGATATGGTCATGAAGATGGAAGTTTCGAATCCGATAGCTTGATCAAGCT 223
Query 240 CAACAACGATGATGTTCTTAGCTTGATAAGCTCAGACGAAACCACTTTGGAAGCATCAAC 299
||||||||||||||||||||||||| |||||| || ||||||||||||||| |||||||
Sbjct 224 TAACAACGATGATGTTCTTAGCTTGAAAAGCTCCGATGAAACCACTTTGGAATCATCAAC 283
Query 300 CGTTAGTGTTTCAAACTTCGGAGCCAAAGGAGATGGAAAAACTGATGATACTCAGGCCTT 359
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 284 TGTTAGTGTTTCAAACTTCGGAGCCAAAGGAGATGGAAAAACCGATGATACTCAGGCCTT 343
Query 360 CAAGAAAGCATGGAAGAAAGCATGTTCAACAAATGGAGTTACTACTTTCTTGGTTCCTAA 419
||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||
Sbjct 344 CAAGAAAGCATGGAAAAAAGCATGTTCAACAAATGGAGTTACTACTTTCTTAATACCTAA 403
Query 420 AGGAAAGACTTATCTCCTTAAGTCTACTCGATTTAGAGGCCCATGCAAATC-CTTACGTA 478
||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct 404 AGGGAAGACTTATCTCCTTAAGTCTACTAGATTTAGAGGCCCATGCAAATCAC-TACGTA 462
Query 479 ACTTTCAGATCCTAGGCACTTTATCAGCATCTACGAAACGTTCAGATTACAAAGACAAAA 538
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 463 ACTTTCAGATCCTAGGCACTTTATCAGCATCTACGAAACGATCAGATTACAAAGACAAAA 522
Query 539 ACCATTGGCTTATCTTAGAGGACGTTAACAATCTATCAATCGACGGTGGCTCGACGGGAA 598
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 523 ACCATTGGCTTATCTTAGAGGACGTTAACAATCTATCAATCGATGGTGGCTCGACGGGGA 582
Query 599 TTATTAATGGCAACGGAAAAACCTGGTGGCAGAACTCATGCAAAATCGACAAATCTAAGC 658
|||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 583 TTATTAATGGCAACGGCAAAATCTGGTGGCAGAACTCATGCAAAATCGATAAATCTAAGC 642
Query 659 CATGCACAAAAGCTCCAACGGCTCTTACTTTATACAATTTAAAGAATTTGAATGTGAAGA 718
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 643 CATGCACAAAAGCGCCAACGGCTCTTACTTTATACAATCTAAAGAATTTGAATGTGAAGA 702
Query 719 ATCTGAGGGTGAA-AAATGCGCAGCAGATTCAGATTTCAATTGAGAAATGCAACAAAGTT 777
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 ATCTGAGGGT-AAGAAATGCGCAGCAGATTCAGATTTCAATTGAGAAATGCAACAAAGTT 761
Query 778 GAAGTTAGTAATGTTGAGATCACTGCTCCGGGCGATAGTCCCAACACAGATGGTATCCAT 837
|||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 762 GAAGTTAGTAATGTTGTGATCACTGCTCCCGGCGATAGTCCCAACACCGATGGTATCCAT 821
Query 838 ATCACTAATACTCAAAACATTCGAGTCTCCAACTCAGATATCGGAACAGGTGATGATTGT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 ATCACTAATACTCAAAACATTCGAGTCTCCAACTCAGATATCGGAACAGGTGATGATTGT 881
Query 898 ATATCCATTGAGGATGGAACGCAAAATCTTCAAATCTTTGATTTAACTTGCGGCCCCGGT 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 882 ATATCCATTGAGGATGGAACGCAAAATCTTCAAATCTTTGATTTAACTTGCGGCCCTGGT 941
Query 958 CACGGGATCAGCATTGGGAGCTTGGGGGACGACAATTCGAAAGCTTATGTCTCGGGAATT 1017
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CACGGAATCAGCATTGGGAGCTTGGGGGACGACAATTCGAAAGCTTATGTCTCGGGAATT 1001
Query 1018 AATGTGGATGGTGCTAAGTTCTCTGAGAGTGACAATGGAGTTA-GGATTAAGACTTATCA 1076
|||||||||||||| ||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 1002 AATGTGGATGGTGCAAAGTTCTCTGAGAGTGATAATGGAGT-ACGGATTAAGACTTATCA 1060
Query 1077 GGGAGGATCAGGAACTGCCAAGAACATTAAATTTCAAAATATTCGAATGGAAAACGTCAA 1136
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1061 GGGAGGATCAGGGACTGCCAAGAACATTAAATTTCAAAACATTCGAATGGAAAATGTCAA 1120
Query 1137 GAATCCGATCATAATCGACCAGGACTACTGCGACAAGGACAAATGCGAAGACCAAG-AGT 1195
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |
Sbjct 1121 GAATCCGATCATAATCGACCAGAACTACTGCGACAAGGACAAATGCGAAGAACAAGGA-T 1179
Query 1196 CGGCAGTGCAAGTGAAAAACGTTGTGTACAAGAACATATCTGGTACGAGCGCTACGGATG 1255
| || ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 1180 CCGCCGTGCAAGTGAAAAACGTTGTGTACAAGAACATATCCGGTACAAGCGCGACGGATG 1239
Query 1256 TGGCGATAACGTTGAATTGCAGCGAGAAGTATCCATGTCAAGGGATTGTGCTTGAGAACG 1315
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1240 TGGCGATAACGTTGAATTGCAGTGAGAAGTATCCATGCCAAGGGATTGTGCTTGAGAACG 1299
Query 1316 TGAAAATAAAAGGAGGAACAGCTTCTTGCAAAAATGCCAATGTTAAAAATCAAGGCACCG 1375
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1300 TGAACATAAAAGGAGGAACAGCTTCTTGCAAAAATGCCAATGTTAAAAATCAGGGCACCG 1359
Query 1376 TTTCTCCTAAATGCTCTTAACTGAGCTAATTATGTAATGCACATACACA--TATT--TAC 1431
|||||||||||||||||||| | ||||||||||||| ||||| ||| ||| ||
Sbjct 1360 TTTCTCCTAAATGCTCTTAA--G--CTAATTATGTAATATACATATACACGTATAAATAT 1415
Query 1432 ATAGATATGCATAT-T-TATATATAG-CA--TGTATATTGTACTAC-ATGCATTGCTTCT 1485
||||| || ||||| | |||||||| || ||||||||||||| | | | |||||||||
Sbjct 1416 ATAGAAATACATATATATATATATACACACATGTATATTGTACT-CTACGTATTGCTTCT 1474
Query 1486 TAATACATGTAGTAAAGATATATGCAAAAATAGTCGAAAGATTTGTT-T--ACATATAAA 1542
||||| || | || | |||||| |||||||| |||||||||||| | |||||||||
Sbjct 1475 TAATATAT--A-TA--G-TATATGGGAAAATAGTAGAAAGATTTGTTGTCCACATATAAA 1528
Query 1543 ATCACCAATATTTATTGTTATTGTATTTTCATGAATAAAGTAATAAGATTATTTGTCT 1600
|| ||||| ||| ||| ||| |||||| |||||||||| ||||||||||||||||||
Sbjct 1529 ATTACCAACATTGATTATTA--GTATTTCCATGAATAAATTAATAAGATTATTTGTCT 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60068316365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5