BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57530.1
Length=2201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938735 jgi|Araly1|938735|scaffold_502926.1 2780 0.0
Ahg483269 jgi|Araly1|483269|fgenesh2_kg.4__2329__AT2G41860.2 1279 0.0
Ahg485540 jgi|Araly1|485540|fgenesh2_kg.5__1532__AT3G51850.1 442 5e-123
> Ahg938735 jgi|Araly1|938735|scaffold_502926.1
Length=1659
Score = 2780 bits (1505), Expect = 0.0
Identities = 1606/1656 (97%), Gaps = 1/1656 (0%)
Strand=Plus/Plus
Query 225 TTTGATC-GGAAAAGTCATGGGTAATTGTTGCGGAACAGCAGGATCATTGGCTCAAAACG 283
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 4 TTTGATCAGGAAAAGTCATGGGTAATTGTTGCGGAACAGCAGGATCATTGGCTCAGAACG 63
Query 284 ATAACAAACCCAAAAAAGGAAGGAAGAAGCAAAACCCTTTCTCGATTGATTACGGTCTTC 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 ATAACAAACCCAAAAAAGGAAGGAAGAAGCAAAACCCTTTCTCGATTGATTACGGTCTTC 123
Query 344 ACCACGGTGGTGGAGATGGAGGTGGAAGACCTCTTAAGCTTATCGTTTTGAATGATCCAA 403
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 124 ACCATGGTGGTGGAGATGGAGGTGGAAGACCTCTTAAGCTTATCGTCTTGAATGATCCAA 183
Query 404 CAGGTCGTGAGATCGAGTCTAAATACACGTTGGGGAGAGAGCTAGGTCGTGGAGAATTCG 463
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 184 CAGGTCGTGAGATCGAGTCCAAATACACGTTGGGGAGAGAGTTAGGCCGTGGAGAATTCG 243
Query 464 GTGTTACGTATCTATGTACTGATAAGGAGACAGACGACGTTTTTGCTTGTAAATCGATTT 523
|||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 244 GTGTCACGTATCTTTGTACTGATAAGGAGACAGGCGACGTTTTTGCTTGTAAATCGATTT 303
Query 524 TGAAGAAGAAGCTGAGGACAGCTGTTGATATTGAAGATGTTAGGAGAGAGGTTGAGATTA 583
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 304 TGAAGAAGAAGCTGAGGACAGCTGTTGATATTGAGGATGTTAGGAGAGAAGTTGAGATCA 363
Query 584 TGAGGCATATGCCTGAGCATCCTAATGTTGTTACTTTGAAGGAGACTTATGAGGATGAGC 643
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 364 TGAGGCATATGCCTGAGCATCCAAATGTTGTTACTTTGAAGGAGACTTTTGAGGATGACC 423
Query 644 ATGCTGTTCATTTGGTTATGGAGCTTTGTGAAGGTGGTGAATTGTTTGATAGGATTGTTG 703
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 424 ATGCTGTGCATTTGGTTATGGAGCTTTGTGAAGGTGGTGAATTGTTTGATAGGATTGTGG 483
Query 704 CTAGAGGGCATTATACTGAGAGAGCTGCTGCTGCTGTCACTAAGACCATCATGGAAGTTG 763
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CTAGAGGGCATTATACCGAGAGAGCTGCTGCTGCTGTCACTAAGACCATCATGGAAGTTG 543
Query 764 TTCAGGTGTGTCATAAGCATGGGGTAATGCACAGGGACCTGAAACCTGAGAACTTCTTGT 823
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TTCAGGTGTGTCACAAGCATGGGGTAATGCACAGGGACCTGAAACCTGAGAACTTCTTGT 603
Query 824 TTGGAAACAAGAAGGAGACTGCACCTCTTAAGGCGATTGATTTTGGTCTCTCTGTTTTCT 883
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 604 TTGGAAACAAGAAGGAGACTGCACCTCTCAAGGCCATTGATTTCGGTCTCTCTGTTTTCT 663
Query 884 TTAAACCAGGCGAGAGGTTTAACGAAATCGTTGGTAGTCCGTACTACATGGCTCCCGAGG 943
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTAAACCAGGCGAGAGGTTTGACGAAATCGTTGGTAGTCCGTACTACATGGCTCCCGAGG 723
Query 944 TGCTAAAACGGAATTATGGTCCAGAAGTTGATATTTGGAGTGCAGGTGTAATTCTTTACA 1003
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 724 TGCTAAAACGGAATTATGGTCCAGAAGTTGACATTTGGAGTGCCGGTGTAATTCTCTACA 783
Query 1004 TACTGCTATGTGGTGTCCCGCCTTTCTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAA 1063
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TACTGCTCTGTGGTGTCCCGCCTTTCTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAA 843
Query 1064 TTATTCGATCTGTACTAGACTTCAGAAGGGACCCATGGCCCAAGGTTTCTGAAAACGCAA 1123
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 844 TCATTCGATCTGTACTGGACTTCAGAAGGGACCCATGGCCCAAAGTTTCTGAAAACGCAA 903
Query 1124 AAGACCTTATCAGGAAAATGCTTGATCCTGACCAAAAGCGTCGTCTTACAGCTCAACAAG 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 AAGACCTTATCAGGAAAATGCTTGATCCTGACCAAAAGCGTCGTCTTACAGCTCAACAAG 963
Query 1184 TCCTAGATCACCCGTGGTTACAGAATGCAAAGACAGCCCCCAATGTATCATTGGGTGAAA 1243
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 964 TCCTAGATCATCCGTGGTTACAGAATGCAAAGACAGCTCCCAATGTATCATTGGGTGAAA 1023
Query 1244 CAGTGAGGGCAAGGTTGAAGCAGTTCACCGTCATGAACAAGCTCAAGAAACGAGCACTCA 1303
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1024 CAGTGAGGGCAAGGTTGAAGCAGTTTACCGTCATGAACAAGCTCAAGAAACGAGCACTCA 1083
Query 1304 GGGTTATTGCTGAGCATTTATCAGATGAAGAAGCTTCAGGTATAAGAGAAGGGTTCCAAA 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GGGTTATTGCTGAGCATTTATCAGATGAAGAAGCTTCAGGTATAAGAGAAGGGTTCCAAA 1143
Query 1364 TAATGGACACAAGCCAAAGAGGGAAGATTAACATCGACGAGCTTAAAATCGGGTTGCAGA 1423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1144 TAATGGACACAAGCCAAAGAGGGAAGATTAATATCGACGAGCTTAAAATCGGGTTGCAGA 1203
Query 1424 AACTTGGTCATGCCATTCCGCAAGATGATTTACAAATTTTGATGGATGCTGGAGACATCG 1483
||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||
Sbjct 1204 AACTTGGTCATGCCATTCCCCAAGATGATCTACAAATTCTGATGGATGCTGGAGATATCG 1263
Query 1484 ATAGAGATGGATATTTGGACTGTGACGAGTTTATTGCCATATCGGTACACCTAAGGAAAA 1543
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 ACAGAGATGGATATTTGGACTGTGACGAGTTTATTGCCATATCGGTACACCTAAGGAAAA 1323
Query 1544 TGGGCAATGACGAGCATCTCAAGAAAGCGTTTGCGTTCTTTGATCAAAACAATAACGGAT 1603
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1324 TGGGCAATGACGAGCATCTCAAGAAAGCATTTGCGTTCTTTGATCAAAACAATAACGGAT 1383
Query 1604 ATATCGAAATAGAGGAGTTAAGGGAAGCCTTGTCTGACGAACTTGGTACAAGTGAAGAAG 1663
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1384 ATATCGAAATAGAGGAGTTAAGGGAAGCATTGTCTGACGAACTTGGTACAAGCGAAGAAG 1443
Query 1664 TTGTTGATGCCATTATCCGTGATGTTGACACCGACAAGGATGGAAGAATAAGTTACGAAG 1723
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1444 TTGTTGATGCCATTATTCGTGATGTTGATACCGATAAGGATGGAAGAATAAGTTACGAAG 1503
Query 1724 AGTTTGTAACGATGATGAAAACAGGAACAGATTGGAGAAAAGCTTCGAGACAGTACTCGA 1783
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1504 AGTTTGTGACGATGATGAAAACAGGAACAGATTGGAGAAAAGCATCGAGACAGTACTCGA 1563
Query 1784 GAGAACGGTTTAACAGTATCAGTCTCAAACTGATGCAAGATGCGTCGTTGCAGGTCAATG 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1564 GAGAACGGTTTAACAGTATCAGTCTCAAACTGATGCAAGATGCGTCGTTGCAGGTTAATG 1623
Query 1844 GTGATACAAGATGAGAGAGGCTTAATCTGTGTCACT 1879
|||||||||||||||||||||| |||||||||||||
Sbjct 1624 GTGATACAAGATGAGAGAGGCTGAATCTGTGTCACT 1659
> Ahg483269 jgi|Araly1|483269|fgenesh2_kg.4__2329__AT2G41860.2
Length=1596
Score = 1279 bits (692), Expect = 0.0
Identities = 1239/1500 (83%), Gaps = 49/1500 (3%)
Strand=Plus/Plus
Query 379 AAGCTTATCGTTTTGAATGATCCAACAGGTCGTGAGATCGAGTC-TAAATACACGTTGGG 437
||||||||||| ||||| || ||||| |||| |||||| || | ||||||| || ||
Sbjct 115 AAGCTTATCGTGTTGAAGGAACCAACGGGTCACGAGATCAAG-CAGAAATACAAATTAGG 173
Query 438 GAGAGAGCTAGGTCGTGGAGAATTCGGTGTTACGTATCTATGTACTGATAAGGAGA-CAG 496
| ||||||||||| ||||| || || || ||||||||||| || || | |||| | |
Sbjct 174 TCGTGAGCTAGGTCGAGGAGAGTTTGGGGTCACGTATCTATGCACCGAGATTGAGACCGG 233
Query 497 ACGACG-TTTTTGCTTGTAAATCGATTTTGAAGAAGAAGCTGAGGACAGCT-G-TTGATA 553
| || | |||| || || ||||||||||| ||||||||||||| || | | | ||||||
Sbjct 234 A-GA-GATTTTCGCATGCAAATCGATTTTAAAGAAGAAGCTGAAAAC-G-TCGATTGATA 289
Query 554 TTGAAGATGTTAGGAGAGAGGTTGAGATTATGAGGCATATGCCTGAGCATCCTAATGTTG 613
|||| || |||| |||||| |||||||| |||||||| |||||||||||||||||| |||
Sbjct 290 TTGAGGACGTTAAGAGAGAAGTTGAGATCATGAGGCAAATGCCTGAGCATCCTAATATTG 349
Query 614 TTACTTTGAAGGAGACTTATGAGGATGAGCATGCTGTTCATTTGGTTATGGAGCTTTGTG 673
|||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 350 TTACTTTGAAAGAGACTTATGAGGATGATAAAGCTGTTCATTTGGTTATGGAGCTTTGTG 409
Query 674 AAGGTGGTGAATTGTTT-GATAGGATTGTTGCTAGAGGGCATTATACTGAGAGAGCTGCT 732
|||| ||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 410 AAGGCGGTGAGCT-TTTCGATAGGATTGTTGCTAGAGGGCATTATACGGAGAGAGCTGCT 468
Query 733 GCTGCTGTCACTAAGACCATCATGGAAGTTGTTCAGGTGTGTCATAAGCATGGGGTAATG 792
||| | || | |||||| ||||| || ||||||||| |||| ||||||||||| || |||
Sbjct 469 GCTTCGGTTATTAAGACGATCATCGAGGTTGTTCAGATGTGCCATAAGCATGGAGTCATG 528
Query 793 CACAGGGACCTGAAACCTGAGAACTTCTTGTTTGGAAACAAGAAGGAGACTGCACCTCTT 852
||||| ||| | |||||||||||||||||||||| |||||||||||| |||||| || ||
Sbjct 529 CACAGAGACTTAAAACCTGAGAACTTCTTGTTTGCAAACAAGAAGGAAACTGCATCT-TT 587
Query 853 -AAGGCGATTGATTTTGGTCTCTCTGTTTTCTTTAAACCAGGCGAGAGGTTTAACGAAAT 911
||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 588 GAAGGCTATTGATTTTGGTCTCTCTATTTTCTTTAAACCAGGCGAGAGATTTAACGAAAT 647
Query 912 CGTTGGTAGTCCGTACTACATGGCTCCCGAGGTGCTAAAACGGAATTATGGTCCAGAAGT 971
|||||| ||||| || ||||||||||||||||| ||| |||| |||||| | |||| |
Sbjct 648 CGTTGGGAGTCCTTATTACATGGCTCCCGAGGTATTAAGGCGGAGTTATGGACAAGAAAT 707
Query 972 TGATATTTGGAGTGCAGGTGTAATTCTTTACATACTGCTATGTGGTGTCCCGCCTTTCTG 1031
|| |||||||| ||||| || ||||||||||| |||| |||||||| || ||||| ||
Sbjct 708 CGACATTTGGAGCGCAGGAGTGATTCTTTACATTTTGCTCTGTGGTGTTCCACCTTTTTG 767
Query 1032 GGCAGAAACTGAACAAGGAGTTGC-ACAAGCAATTATTCGATCTGT-ACTAGACTTCAGA 1089
||||||||| ||||| ||||| || | |||||||| |||||||||| | | |||||||||
Sbjct 768 GGCAGAAACCGAACATGGAGTCGCGA-AAGCAATTCTTCGATCTGTGA-TCGACTTCAGA 825
Query 1090 AGGGACCCATGGCCCAAGGTTTCTGAAAACGCAAAAGACCTTATCAGGAAA-ATGCTTGA 1148
|| ||||| ||||| || ||||||| || |||||||| || || | ||| |||||| |
Sbjct 826 AGAGACCCCTGGCCGAAAGTTTCTGGTAATGCAAAAGATCTGATAAA-AAAGATGCTTCA 884
Query 1149 TCCTGA-CCAAAAGCGTCGTCTTACAGCTCAACAAGTCCTAGATCACCCGTGGTTACAGA 1207
||| || |||| ||||||||| |||||||||||||| || ||||| |||||| ||||||
Sbjct 885 TCCAGATCCAAG-GCGTCGTCTAACAGCTCAACAAGTGCTTGATCATCCGTGGATACAGA 943
Query 1208 ATGCAAAGACA-GCCCCCAATGTATCATTGGGTGAAACAGTGAGGGCAAGG-TTGAAGCA 1265
||| |||| | || |||||||||||||||||||||| || || |||||| || |||||
Sbjct 944 ATGGTAAGA-ATGCTTCCAATGTATCATTGGGTGAAACCGTAAGAGCAAGGCTT-AAGCA 1001
Query 1266 GTTCACCGTCATGAACAAGCTCAAGAAACGAGCACTCAGGGTTATTGCTGAGCATTTATC 1325
||| | || |||||||||||||||||| | |||||||||||||||||||||||| ||||
Sbjct 1002 ATTCTCTGTTATGAACAAGCTCAAGAAAAGGGCACTCAGGGTTATTGCTGAGCATCTATC 1061
Query 1326 AGATGAAGAAGCTTCAGGTATAAGAGAAGGGTTCCAAATAATGGACACAAGCCAA-AGAG 1384
| ||||||| | || | |||| |||| | |||||| |||||||||||||| || ||||
Sbjct 1062 GGTTGAAGAAACATCTTGCATAAAAGAAAGATTCCAAGTAATGGACACAAGC-AATAGAG 1120
Query 1385 GGAAGATTAACATCGACGAGCTTAA-AATCGGGTTGCAGAAACTTGGTCAT-GCCATTCC 1442
||||||||| |||| ||||||| | |||||| ||||||||||| || || | ||||
Sbjct 1121 GGAAGATTACCATCAACGAGCT-AGGAATCGGATTGCAGAAACTCGGG-ATTGTTGTTCC 1178
Query 1443 GCAAGATGAT-TTACAAATTTTGATGGATGCTGGAGACATCGATAGAGATGGATATTTGG 1501
|||||||| || ||||| |||||||| || ||||| | |||| ||||||||| || |
Sbjct 1179 TCAAGATGACATT-CAAATATTGATGGACGCGGGAGATGTTGATAAAGATGGATACTTAG 1237
Query 1502 ACTGTGAC-GAGTTTATTGCCATATCGGTACACCTAAGGAAAATGGGCAATGACGAGCAT 1560
|| || | || ||| | ||||||||||||||| | ||||| | ||||| ||||||||
Sbjct 1238 AC-GTCAATGAATTTGTAGCCATATCGGTACACATCAGGAAGTTAGGCAACGACGAGCA- 1295
Query 1561 CTCAA-GAAAGCGTTTGCGTTCTTTGATCAAAA-CAATAACGGATATATCGAAATAGAGG 1618
|| || | |||| ||| ||||||| || ||||| ||| | || ||||| |||||| | |
Sbjct 1296 CTTAAAGGAAGCCTTTACGTTCTTCGA-CAAAAACAAGAGTGGTTATATAGAAATACAAG 1354
Query 1619 AGTTAAGGGAAGCCTTGTCTGACGA-ACTTGGTAC-A--AGTGAAGAAGTTGTTGATGCC 1674
| ||||| || || ||| | || || | ||| || | |||||||||||||| || |||
Sbjct 1355 AATTAAGAGATGCTTTGGCAGATGATA-TTGACACTACTAGTGAAGAAGTTGTCGAAGCC 1413
Query 1675 ATTATCCGTGATGTTGACACCGACAAGGATGG-AAGAATAAGTTACGAAGAGTTTGTAAC 1733
||||||| |||||| |||||| | |||||||| || ||||||||| ||||||||| |||
Sbjct 1414 ATTATCCTTGATGTCGACACCAATAAGGATGGGAA-AATAAGTTATGAAGAGTTTACAAC 1472
Query 1734 GATGATGAAAACAGGAACAGATTGGAGAAAAGCTTCGAGACAGTACTCGAGAGAACGGTT 1793
|||||||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||
Sbjct 1473 GATGATGAAAACGGGAACGGATTGGAGAAAAGCTTCGAGGCAGTACTCGAGGGACCGGTT 1532
Query 1794 TAACAGTATCAGTCTCAAACTGATGCAAGATGCGTCGTTGCAGGTC-AATGGTGATACAA 1852
||| ||| | || || || ||||||||||||| ||| |||||| || ||||| |||||||
Sbjct 1533 TAAGAGTCTTAGCCTTAAGCTGATGCAAGATGGGTCCTTGCAG-TCTAATGGAGATACAA 1591
> Ahg485540 jgi|Araly1|485540|fgenesh2_kg.5__1532__AT3G51850.1
Length=2080
Score = 442 bits (239), Expect = 5e-123
Identities = 636/825 (77%), Gaps = 38/825 (5%)
Strand=Plus/Plus
Query 508 GCTTGTAAATCGATTTTGAAGAAGAAGCTGAGGACAGCTGTTGATATTGAAGATGTTAGG 567
||||| || ||||| | ||||| |||||| ||||| ||||| |||||||| |||||||
Sbjct 396 GCTTGCAAGTCGATCTCGAAGAGGAAGCTTAGGACTGCTGTGGATATTGAGGATGTTAAA 455
Query 568 AGAGAGGTTGAGATTATGAGGCATATGCCTGAGCA-TCCTAATGTTGTTACTTTGAAGG- 625
||||| || | |||||||| |||| ||||| || | | | | | |||||||||||||||
Sbjct 456 AGAGAAGTGGCGATTATGAAGCATTTGCCTAAG-AGTTCGAGTATTGTTACTTTGAAGGA 514
Query 626 AGACTTATGAGGATGAGCATGCTGTTCATTTGGTTATGGAGCTTTGTGAAGGTGGTGAAT 685
|| ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 515 AG-CTTGTGAGGATGATAATGCTGTGCATTTGGTTATGGAGCTTTGTGAAGGTGGTGAGC 573
Query 686 TGTTT-GATAGGATTGTTGCTAGAGGGCATTATACTGAGAGAGCTGCTGCTGCTGTCACT 744
| ||| ||| |||||||||| |||||||||||||| ||| | |||||||||| || |||
Sbjct 574 T-TTTCGATCGGATTGTTGCGAGAGGGCATTATACGGAGCGTGCTGCTGCTGGGGTTACT 632
Query 745 AAGACCATCATGGAAGTTGTTCAGGTGTGTCATAAGCATGGGGTAATGCACAGGGACCTG 804
||||| || | || ||||| || | || ||||||||||| || || || || || ||
Sbjct 633 AAGACGATTGTTGAGGTTGTGCAACTTTGCCATAAGCATGGTGTGATTCATAGAGATTTG 692
Query 805 AAACCTGAGAACTTCTTGTTTGGAAACAAGAAGGAGA-CTGCACCTCTT-AAGGCGATTG 862
|| || ||||| || ||||| | ||||||||||||| || | || || || || ||||
Sbjct 693 AAGCCGGAGAATTTTTTGTTCGCTAACAAGAAGGAGAACT-CGCCG-TTGAAAGCTATTG 750
Query 863 ATTTTGG-TCTCTCTG-TTTTCTTTAAACCAGGCGAGAGGTT-TAACGAAATCGTTGGTA 919
||||||| | | || | ||||||| || ||||| |||| ||| | ||| || ||||| |
Sbjct 751 ATTTTGGAT-TGTC-GATTTTCTTCAAGCCAGGTGAGAAGTTCTC-CGAGATTGTTGGGA 807
Query 920 GTCCGTACTACATGGCTCCCGAGGTGCTAAAACGGAATTATGGTCCAGAAGTTGATATTT 979
|||| || |||||||| || |||||||| || ||||| ||||| || ||| | |||||||
Sbjct 808 GTCCATATTACATGGCACCTGAGGTGCTTAAGCGGAACTATGGACCCGAAATAGATATTT 867
Query 980 GGAGTGCAGGTGTAATTCTTTACATACTGCTATGTGGTGT-CCCGCCTTTCTGGGCAGAA 1038
||||||| || || |||||||| || ||| | ||||| || ||| || |||||||||||
Sbjct 868 GGAGTGCTGGAGTGATTCTTTATATTCTGTTGTGTGGAGTTCCC-CCATTCTGGGCAGAG 926
Query 1039 ACTGAACAAGGAGTTGCACAAGCAATTATTCGATCTGTACTAGACTTCA-GAAGGGACCC 1097
| ||||| |||||||| || || ||| | || ||| | || || | || |||| ||
Sbjct 927 TCAGAACAGGGAGTTGCTCAGGCTATTCTGCGCGGGGTAATTGATTTTAAGA-GGGAACC 985
Query 1098 ATGGCCCAAGGTTTCTGAAAACGCAAAAGAC-CTTA-TCAGGA-AAATGCTT-GATCCTG 1153
||||| || ||||||| | ||| || || || | |||| | ||||| || || ||||
Sbjct 986 GTGGCCAAACATTTCTGAGACCGCTAA-GAATCT-AGTCAG-ACAAATG-TTAGAGCCTG 1041
Query 1154 A-CCAAAAGCGTCGTCTTACAGCTCAACAAGTCCTAGATCACCCGTGG-TTACAGAATGC 1211
| ||||| |||||| || || || ||||||| || || ||||| ||| || ||||| ||
Sbjct 1042 ATCCAAA-GCGTCGGCTGACTGCAAAACAAGTGCTTGAGCACCCATGGATT-CAGAACGC 1099
Query 1212 AAAGACAGCCCCCAATGTATCAT-TGGGTGAAACAGTGAGGGCAAGGTTGAAGCAGTTCA 1270
||||| ||| |||||||| || | | || || |||| | | ||||||||||| ||
Sbjct 1100 AAAGAAAGCTCCCAATGT-TCCTCTTGGAGATGTTGTGAAGTCCAGGTTGAAGCAATTTT 1158
Query 1271 CCGTCATGAACAAGCT-CAAGA-AACGAGCACTCAGGGTTATTGC 1313
| || ||||||| | | ||||| || ||| | |||||||||||
Sbjct 1159 CAGTGATGAACA-GATTCAAGAGAAA-AGCTTTGAGGGTTATTGC 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82846282875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5