BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57550.2
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486203 jgi|Araly1|486203|fgenesh2_kg.5__2195__AT3G57550.1 2747 0.0
Ahg902166 jgi|Araly1|902166|Al_scaffold_0004_2816 990 0.0
> Ahg486203 jgi|Araly1|486203|fgenesh2_kg.5__2195__AT3G57550.1
Length=1761
Score = 2747 bits (1487), Expect = 0.0
Identities = 1683/1773 (95%), Gaps = 32/1773 (2%)
Strand=Plus/Plus
Query 1 GGCCGCTTGTCTCCAAGTTGTCTTGGGACTCGTCGACGATGCACAC----A--TA-GTAT 53
|||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1 GGCCGCTTGTCTCCAAGTTGTCTTGGGACTCGTCGACGATGCACACATATATTTACTTAT 60
Query 54 ---ATTTATATATTCTTCTCCTAGCCGAACCAG-AAATTTCCAGAGAGATAATCAAATTC 109
||||||||||||||||| |||||||||||| |||||| ||||||| || || ||
Sbjct 61 AACATTTATATATTCTTCTCGTAGCCGAACCAGAAAATTTTCAGAGAG---AT--AA-TC 114
Query 110 AATTGCATAAAAACTGAATCTTGTTGTTGAAAAAGAGCTCTCACA-AAACTTGTTTCTCA 168
|||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct 115 AATTGCATAAAAACTGAATCTTGTTGTTGAAAAAGAGCAC-C-CATAAACTTGTTTCTCA 172
Query 169 ATTCTCTCCTTTGGCCCTTTTTC-TCACAATCTGCGGATATAAATACGCTTCTTCTCCTC 227
|||||||| |||||||| ||||| ||||||||||| |||||||||| || ||||||| ||
Sbjct 173 ATTCTCTCGTTTGGCCC-TTTTCTTCACAATCTGCCGATATAAATAAGCATCTTCTCGTC 231
Query 228 CGCTAATTACCCAAATTCGATCCTAAAGCTCTCGTC-TTTCTTCAGCGTTTTCCGGTGTT 286
| ||||| | || |||||||||| |||||||||||| |||| || |||||||||||||||
Sbjct 232 CTCTAATAAGCC-AATTCGATCCAAAAGCTCTCGTCTTTTC-TCTGCGTTTTCCGGTGTT 289
Query 287 CATATTCGAGGCTGTGTTGTGTCTTCTTGGAGGCTTAGAAAATCTCTATGGGAGAAGCAC 346
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 290 CATATTCGAGGCTGTGTTGTGTCTTCTTGGAGGCATAGAAAATCTCTATGGGAGAAGCAC 349
Query 347 CAGCTTTCTTTGTGGATCATCTGGAGAATGGATACACCAATGGCTTTGGTGTCAAATCCG 406
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 350 CAGCTTTCTTTGTGGATCATCTGGAGGATGGATACACCAATGGCTTTGGTGTCAAATCCG 409
Query 407 AGCCTAAGAACAGAGATACATCTGTGCTTATTGGGGATCGATCCTTTGTGATTGGTGGAA 466
||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 410 AGCCTAAGAACAGAGATACTTCTGTCCAAATTGGGGATCGATCCTTTGTGATTGGTGGAA 469
Query 467 ATCATGAAGGAAACCCATTGTTCCTTGGTGTTCAGATTCATGACAAAGTCACTAACAAGT 526
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 470 ATCATGAAGGAAACCCATTGTTCCTTGGTGTTCAGATTCATGACAAAATCACTAACAAGT 529
Query 527 GGTCCAGTCCTAGTGTTCTTGGAACTGGCCCTAAACCCTGCAAGGGTTACTCTGCCATTG 586
|||| || |||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 530 GGTCTAGCCCTACTGTTCTTGGAACCGGCCCTAAACCCTGCAAGGGTTACTCTGCCATTG 589
Query 587 TTCTTCCAAAAGGTCGGATTTTGGTTATCAAAAAAGGCTCAGCTTCTGATGACTCCATTT 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TTCTTCCAAAAGGTCGGATTTTGGTTATCAAAAAAGGCTCAGCTTCTGATGACTCCATTT 649
Query 647 GGTTCCTTGAGGTGGATACTCCTTTTATCCGGGAACAAAAGAAATTGCTTGGAAGAGAGG 706
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GGTTCCTTGAGGTTGACACTCCTTTTATCCGGGAACAAAAGAAATTGCTTGGAAGAGAGG 709
Query 707 TTGTTGCTTGGAGTAAAGGAGTAAGGGGAAATGCAGAGAAGCCTATTGTTATAAGCGGTC 766
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 710 TTGTTGCTTGGAGTAAAGGAGTAAGGGGAAATGCTGAGAAGCCTATTGTTATAAGCGGTC 769
Query 767 CTTCTGGAGTTGGAAAAGGAACACTTATATCGATGCTCATGAAGGAGTTTCCTTCAATGT 826
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 770 CTTCTGGAGTTGGAAAAGGAACACTTATATCGATGCTTATGAAGGAGTTTCCTTCAATGT 829
Query 827 TTGGGTTCTCTGTGAGCCACACGACTCGAGCTCCAAGGTGTATGGAGAAGAATGGTGTTC 886
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 830 TTGGGTTCTCTGTGAGCCATACAACTCGAGCTCCAAGGTGTATGGAGAAGAATGGTGTTC 889
Query 887 ACTACCATTTCACTGATAAGACTGTTATGGAGAAAGAAATCAAAGATGGGAAGTTTCTCG 946
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 890 ACTACCATTTCACTGATAAGACTGTTATGGAGAAAGAAATCAAAGACGGGAAGTTTCTCG 949
Query 947 AGTTTGCGTCTGTTCACGGCAATCTATACGGAACCAGCATTGAATCCGTTGAGGTTGTAA 1006
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 950 AGTTTGCGTCTGTTCATGGTAATCTATACGGAACCAGCATTGAATCTGTTGAGGTTGTAA 1009
Query 1007 CAGATTCAGGAAAGAGATGCATTTTGGATATTGATGTTCAAGGAGCGAGGTCAGTGAAGG 1066
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1010 CAGATTCAGGAAAGAGATGCATTTTGGACATTGATGTTCAAGGAGCGAGGTCAGTGAAGG 1069
Query 1067 CGAGTTCACTGGATGCGATATTCATATTCGTTTGTCCTCCTTCAATGAAGGAACTTGAAG 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 CGAGTTCACTGGATGCGATATTCATATTCGTTTGTCCTCCTTCAATGAAGGAACTTGAAG 1129
Query 1127 ATCGGCTTCGTGCCCGAGGAACAGAGACAGAGGAGCAAATCCAAAAGCGGCTTAGAAACG 1186
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1130 ATCGGCTTCGTGCTCGAGGAACCGAGACAGAGGAGCAGATCCAAAAGCGGCTTAGAAACG 1189
Query 1187 CTGACGCAGAGATCAAAGCAGGGAAATCCTCTGGCATTTTTGAACACAAACTGTATAATG 1246
|||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1190 CTGAAGCAGAGATCAAAGCGGGGAAATCCTCTGGCATTTTTGAACACATTCTGTATAATG 1249
Query 1247 ACAACCTTGAGGAATGCTACAAGACCCTTAAGAATCTCTTGGGGATTAACGACCTTGCTC 1306
|||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||
Sbjct 1250 ACAACCTTGAGGAATGCTACAAGAACCTTAAGAACCTCTTGGGGATAAACGACCTTGCTC 1309
Query 1307 CTGTGAATGGTGTAGAAGCAGTAGAAGGGATCAATCTGCCCAAGGAGCACACAGTAACAA 1366
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1310 CTGTGAATGGTGTAGAAGCAGTAGAAGGGATCGATCTGCCCAAGGAGCACACAGTAACAA 1369
Query 1367 AGATGGATGACAAGATTTTGATTCAAGAAACAGGAGAAGGAACCAAGAACAAAATGATCG 1426
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1370 AGATGGATGACAAGATTTTGATTCAAGAAACAGGAGAAGGAACCAAAAACAAAATGATCG 1429
Query 1427 TGTTGGATTTATCTTCAATCAACGGGGGAGCACCGGGAAGAACAAGAGGGATCGTTCTGG 1486
|||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TGTTGGATCTATCTTCTATTAACGGGGGAGCACCGGGAAGAACAAGAGGGATCGTTCTGG 1489
Query 1487 ACACGGTTAAGTCCAGTTGACAATGAGTCTTTTTATTTGGCTGCGGGAAAGCT--G-AGG 1543
|||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |||
Sbjct 1490 ACACGGTTAAGTCCAGTTGACAATGAGTCTTTTTATTTCGCTGCGGGAA-GCTAAGGAGG 1548
Query 1544 AAACATTTAGACGATGATGATGAACATTGCTCGTTGTTTTAT---GACTGTGGTTGGAAG 1600
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1549 AAACATTTAGATGATGATGATGAACATTGCTCGTTGTTTTATTATGACTGTGGTTGGAAG 1608
Query 1601 GTAGTGTTATGCGATCACTAGATAGGCACtgatgatgatgattatgattatgatgattca 1660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 GTAGTGTTTTGCGATCACTAGATAGGCACTGATGATGATGATTATGATTATGATGATTCA 1668
Query 1661 agaaagtcatgatctcttatgagagatgatgGAATAAGGTTATTTTGTTCTTTTTACTGA 1720
|||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 1669 AGAAAGTCATGATCTCTTCTGAGAGATGATGGAATAAGGTTTTTTTGTTCATTTTACTGA 1728
Query 1721 TAAAGATTTTGTTTAATTTAAATCTTGAAAGAA 1753
||||||||||||||||| |||||||||||||||
Sbjct 1729 TAAAGATTTTGTTTAATCTAAATCTTGAAAGAA 1761
> Ahg902166 jgi|Araly1|902166|Al_scaffold_0004_2816
Length=1164
Score = 990 bits (536), Expect = 0.0
Identities = 965/1167 (83%), Gaps = 50/1167 (4%)
Strand=Plus/Plus
Query 334 ATGGGAGAAGCACCAGC--TTTCTTTGTGGATCATCTGGAGAATGGATACACCAATGGC- 390
||||||||||| ||||| |||| ||||||||||||||||| ||| || |||||||
Sbjct 1 ATGGGAGAAGCTCCAGCAATTTC--AGTGGATCATCTGGAGAACGGACACTTCAATGGCG 58
Query 391 TTTGGTGTCAAATCCG-AGCCTAAGAACA--GAGATACATCTGT-GCTTATTGGGGATCG 446
| | |||| ||||| | | || |||||| ||||| ||| || | | || |||||
Sbjct 59 TCT-GTGTGAAATCTGCA-CCCGAGAACATTGAGAT--ATCAGTAG-ATGCCGGCGATCG 113
Query 447 ATCCTTTGTGATTGGTGGAAATCATG-AAGGAAACCCATTGTTCC-TTGGTGTTCAGATT 504
| | |||||||| ||||||||||||| |||| || | ||| |||| |||| |||||||||
Sbjct 114 AACTTTTGTGATCGGTGGAAATCATGAAAGG-AA-CAATTTTTCCATTGGGGTTCAGATT 171
Query 505 CATGACAAAGTCACTAACAAGTGGTCCAGTCCTAGTGTTCTTGGAACTGGCCCTAAACCC 564
|||||||| ||| |||||| |||| ||||||| ||| ||||| || || ||||| |||
Sbjct 172 TATGACAAAATCATTAACAATTGGTTTAGTCCTATTGTGCTTGGGACAGGTCCTAAGCCC 231
Query 565 TGCAAGGGTTACTCTGCCATTGTTCTTCCAA-AAGGTCGGATTTTGGTTATCAAAAAAGG 623
|| |||| |||||||| |||||| || || ||||||||||||||||||| || |||||
Sbjct 232 AGCCAGGGGTACTCTGCGTTTGTTC-TCGAACAAGGTCGGATTTTGGTTATTAAGAAAGG 290
Query 624 CTCAGCTTCTG--ATGACTCCATTTGGTTCCTTGAGGTGGATACTCCTTTTATCCGGGAA 681
||| | || | |||| ||||| |||||||| ||||| |||| ||| | | | ||||||
Sbjct 291 TTCA-CCTC-GAAATGAATCCATCTGGTTCCTCGAGGTAGATAGTCCATATGTGCGGGAA 348
Query 682 CAAAAGAAATTGCT-TGGAAGAGAGGTTGTTGCTTGGAGTAAAGGAGTAAGGGGAAATGC 740
|| |||||||| || ||||| || |||||||| ||||||||||| || || || |||||
Sbjct 349 CAGAAGAAATTACTAGGGAAG-GAAGTTGTTGCGTGGAGTAAAGGTGTGAGAGGCAATGC 407
Query 741 AGAGAAGCCTATTGTTATAAGCGGTCCTTCTGGAGTTGGAAAAGGAACACTTATATCGAT 800
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 408 CGAGAAGCCTATTGTTATAAGCGGTCCTTCTGGAGTTGGAAAAGGAACGCTTATATCAAT 467
Query 801 GCTCATGAAGGAGTTTCCTTCAATGTTTGGGTTCTCTGTGAGCCACACGACTCGAGCTCC 860
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 468 GCTTATGAAGGAGTTTCCTTCAATGTTTGGGTTCTCAGTGAGCCACACAACTCGATCTCC 527
Query 861 AAGGTGTATGGAGA-AGAATGGTGTTCACTACCA-TTTCACTGATAAGACTGTTATGGAG 918
||||| |||||||| ||| ||||||||| || || ||| ||||||| | |||||||||
Sbjct 528 AAGGTCTATGGAGAGAGA-TGGTGTTCATTATCACTTTG-CTGATAAAAAAGTTATGGAG 585
Query 919 AAAGAAATCAAAGATGGGAAGTTTCTCGAGTTTGCGTCTGTTCACGGCAATCTATACGGA 978
||||||||||||||||| |||||||| |||||||| |||||||| || ||||| || |||
Sbjct 586 AAAGAAATCAAAGATGGAAAGTTTCTTGAGTTTGCTTCTGTTCATGGTAATCTCTATGGA 645
Query 979 ACCAGCATTGAATCCGTTGAGGTTGTAACAGATTCAGGAAAGAGATGCATTTTGGATATT 1038
||||||||||| ||||||||| | ||||||||||||||||||||||| ||| | || |||
Sbjct 646 ACCAGCATTGAGTCCGTTGAGATGGTAACAGATTCAGGAAAGAGATGTATTCTCGACATT 705
Query 1039 GATGTTCAAGGAGCGAGGTCAGTGA-AGGCGAGTTCACTGGATGCGATATTCATATTCGT 1097
|||||||| || || ||||| |||| || ||||||| || ||||| ||||||||||||||
Sbjct 706 GATGTTCAGGGGGCAAGGTCTGTGAGAG-CGAGTTCTCTTGATGCCATATTCATATTCGT 764
Query 1098 TTGTCCTCCTTCAATGAAGGAACTTGAAGATCGGCTTCGTGCCCGAGGAACAGAGACAGA 1157
||||| ||||||||||| || |||||||||||||| ||||| ||||||| ||||||||
Sbjct 765 GTGTCCCCCTTCAATGAAAGAGCTTGAAGATCGGCTCCGTGCTAGAGGAACCGAGACAGA 824
Query 1158 GGAGCAAATCCAAAAGCGGCTTAGAAACGCTGACGCAGAGATCAAAGCAGGGAA-ATCCT 1216
||||||||| ||||||||||||||||| ||||| |||||||| |||| |||| | |||||
Sbjct 825 GGAGCAAATTCAAAAGCGGCTTAGAAATGCTGAGGCAGAGATGAAAG-AGGGGATATCCT 883
Query 1217 CTGGCATTTTTGAACACAAACTGTATAATGACAACCTTGAGGAATGCTACAAGACCCTTA 1276
| || ||||| | | || ||||||||||||||||||||||||||||||||| || |
Sbjct 884 CGGGTATTTTCGGTCTCATTTTGTATAATGACAACCTTGAGGAATGCTACAAGAAGCTCA 943
Query 1277 AGAATCTCTTGGGGATTA-ACG-ACCTTGCTCCTGTGAATGGTGTAGAAGCAGTAGAAGG 1334
|||| ||||||||| | | | | | | || |||| |||||||||||| | | |||||
Sbjct 944 AGAAACTCTTGGGGCT-AGATGGAG-TCACTTCTGTCAATGGTGTAGAA--ATT-GAAGG 998
Query 1335 GATCAATCTGCCCAAGGAGCACACAGTAAC-AAAGATGGATGACAAGATT-TTGATTCAA 1392
||||||||| |||| |||||||||||| | ||| ||||| || ||||| || ||||||
Sbjct 999 GATCAATCTTCCCACCGAGCACACAGTATCTAAA-ATGGAAGATAAGATCATT-ATTCAA 1056
Query 1393 GAAACAGGAGAAGGAACCAAGAA-CAAAATGATCGTGTTGGATTTATCTTCAATCAACGG 1451
||||||||| ||| ||| ||| | ||| || | || |||||| ||||||| | || ||
Sbjct 1057 GAAACAGGAAAAGAAAC-AAGGATCAAGAT--T-GTATTGGATATATCTTCGCTTAATGG 1112
Query 1452 GGGAGCACCGGGAAGAACAAGAGGGAT 1478
||||||||||| |||||||| |||||
Sbjct 1113 AGGAGCACCGGGTAGAACAAGGGGGAT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66696018995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5