BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57560.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486205 jgi|Araly1|486205|fgenesh2_kg.5__2197__AT3G57560.1 1696 0.0
> Ahg486205 jgi|Araly1|486205|fgenesh2_kg.5__2197__AT3G57560.1
Length=1118
Score = 1696 bits (918), Expect = 0.0
Identities = 1054/1121 (94%), Gaps = 3/1121 (0%)
Strand=Plus/Plus
Query 106 ATGGCCACCGTCACATCCAATGCTTCACCTAAATCCTTCTCCTTCACTGTTTCCAATCCT 165
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1 ATGGCCACCGTCACATCCAATGCTTCACCTAAATCCTTCTCCTTCTCTATTTCCAATCCT 60
Query 166 TTCAAAACCCTAATCCCCAACAAATCACCATCTCTCTGTTATCCAACTCGCAACAAGAAC 225
| ||| | ||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 61 CTGAAATCACTAATCCCCAACAAATCACCATCTCTCAACTATCCACCTCG---CAAGAAC 117
Query 226 CATCACCGTCTAGGTTTCTCGATAAAAGCCACCGTATCAACACCACCTTCAATCGCAACC 285
||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 118 CATCACCGTCTAGGTTTATCGATAAACGCCACCGTATCAACACCACCTTCAATTGCAACC 177
Query 286 GGAAATGCACCTTCACCGGATTACAGAGTCGAGATTCTCTCCGAATCTCTACCATTTATC 345
||||||||||||||||||||||||||||| ||||||||||| |||||| |||| ||||||
Sbjct 178 GGAAATGCACCTTCACCGGATTACAGAGTGGAGATTCTCTCTGAATCTTTACCGTTTATC 237
Query 346 CAAAAATTCCGAGGTAAAACCATAGTTGTCAAATACGGCGGCGCAGCAATGACTTCGCCG 405
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAAAAATTCCGTGGTAAAACCATAGTTGTCAAATACGGCGGCGCAGCAATGACTTCGCCG 297
Query 406 GAACTTAAATCCTCCGTCGTAAGCGATCTCGTGCTCCTCGCGTGTGTCGGTCTTCGTCCG 465
|| || |||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 298 GAGCTCAAATCCTCCGTCGTCAGCGATCTCGTGCTCCTCGCGTGCGTTGGTCTTCGTCCG 357
Query 466 ATCCTCGTTCACGGTGGTGGTCCTGACATCAACCGTTACCTGAAACAACTCAACATCCCA 525
||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 358 ATCCTCGTTCATGGTGGTGGTCCTGATATTAACCGTTACCTGAAACAACTCAACATTCCA 417
Query 526 GCTGAGTTTCGTGACGGACTACGTGTCACCGACGCAACGACGATGGAGATCGTCTCTATG 585
|||||||||||||||||||| |||||||| ||||| || || ||||||||||||||||||
Sbjct 418 GCTGAGTTTCGTGACGGACTTCGTGTCACTGACGCCACAACAATGGAGATCGTCTCTATG 477
Query 586 GTTTTAGTCGGAAAGGTCAATAAGAATCTGGTTTCTCTTATTAACGCCGCCGGAGCCACC 645
|||||||||||||| || ||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 478 GTTTTAGTCGGAAAAGTTAATAAGAATCTTGTTTCGCTTATTAACGCCGCCGGAGCAACC 537
Query 646 GCTGTGGGGTTATCAGGACACGACGGTCGTCTTCTCACAGCACGACCTGTTCCCAATTCA 705
|| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 538 GCCGTGGGGTTATCAGGACACGACGGTCGTCTTCTCACTGCACGGCCTGTCCCCAATTCA 597
Query 706 GCTCAGTTAGGTTTCGTTGGTGAAGTTGCAAGAGTTGATCCATCTGTGTTACGTCCGCTC 765
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GCTCAATTAGGTTTCGTTGGTGAAGTTGCAAGAGTTGATCCATCTGTGTTACGTCCGCTT 657
Query 766 GTTGATTATGGTTACATTCCAGTGATTGCCTCTGTTGCTGCTGATGATTCTGGTCAAGCT 825
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTTGATTACGGTTATATTCCAGTGATTGCCTCTGTTGCTGCTGATGATTCTGGTCAAGCT 717
Query 826 TACAATATCAATGCAGATACAGTTGCTGGAGAGCTTGCGGCCGCGCTTGGAGCTGAGAAA 885
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 718 TACAATATCAATGCAGATACAGTTGCTGGAGAGCTTGCGGCGGCGCTTGGAGCTGAGAAA 777
Query 886 CTGATTCTGCTGACTGATGTGGCTGGAATCTTGGAGAATAAAGAGGATCCAAGTAGTTTG 945
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 778 TTGATTCTGTTGACTGATGTGGCTGGAATCTTGGAGAATAAAGAGGATCCGAGTAGTTTG 837
Query 946 ATAAAGGAGATTGATATAAAAGGAGTGAAGAAGATGATTGAAGATGGGAAAGTTGCTGGT 1005
| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 838 GTGAAGGAGATTGATATAAAGGGAGTGAAGAAGATGATTGAAGATGGTAAAGTTGCTGGT 897
Query 1006 GGGATGATTCCTAAAGTGAAGTGTTGTATAAGGTCTCTAGCTCAAGGAGTTAAGACTGCT 1065
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 898 GGGATGATTCCTAAGGTGAAGTGTTGTATAAGGTCTCTTGCTCAAGGAGTTAAGACGGCT 957
Query 1066 AGTATTATTGATGGAAGGAGACAACATTCTTTGCTTCATGAGATTATGTCTGATGAAGGA 1125
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 958 AGTATTATTGATGGAAGGAGACAACATTCTCTGCTTCATGAGATTATGTCTGATGAAGGA 1017
Query 1126 GCTGGAACTATGATTACTGGATAAGTTTGCTGTAATGGGTGATCATCAAAGTTGAGTTTT 1185
|||||||||||||||||||||||| |||| || ||||||||||||||||||||||| |||
Sbjct 1018 GCTGGAACTATGATTACTGGATAAATTTGGTGCAATGGGTGATCATCAAAGTTGAGATTT 1077
Query 1186 TTGTATTTGAGAATGCCAATGTTTCTTCATTAGGATGTCAA 1226
|||||||||||||||||| ||||| || |||||||||||||
Sbjct 1078 TTGTATTTGAGAATGCCAGTGTTTGTTAATTAGGATGTCAA 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5