BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57570.2
Length=3705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486206 jgi|Araly1|486206|fgenesh2_kg.5__2198__AT3G57570.1 2344 0.0
> Ahg486206 jgi|Araly1|486206|fgenesh2_kg.5__2198__AT3G57570.1
Length=3445
Score = 2344 bits (1269), Expect = 0.0
Identities = 1493/1596 (94%), Gaps = 36/1596 (2%)
Strand=Plus/Plus
Query 2035 AGGTTTAACTTTTGACAGTGATCGAGTGCTAAAGCTGATCCCAGAGTGGGCTAGAAGTGT 2094
||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 1881 AGGTTCAACTTTTGACAGTGATCGAGTGCTAAAAATGATACCAGAGTGGGCTAAAAGTGT 1940
Query 2095 ACAAAACTGGAACTCACTGATCGGACCTTTGCTTGACAAGATGTTCTTGGAGCCATCCAA 2154
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1941 ACAAAACTGGGACTCACTGATCGGACCTTTGCTTGACAAAATGTTCTTGGAGCCATCCAA 2000
Query 2155 TGCCATCATGGTTAGGTTTCTTAGTTGCATCAGTGAATCTTTGGCAGATACGTCGGACTT 2214
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2001 TGCCATCATCGTTAGGTTTCTTAGTTGCATCAGTGAATATTTGGCAGATACGTCGGACTT 2060
Query 2215 GGTCCTTCCGCATGTACTTTCACATATGAAGAAGCAAAACAAGGTGGATGCGAGCTTCAT 2274
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2061 GGTCCTTCCGCATGTACTTTCACATATGAAGAAGCAAAACAAGGTGGATGAGAGCTTCAT 2120
Query 2275 ATCCAGATCTGATACTAAAAGTTCAGTTGACAAAACTAAATCGGAGAAATCTCTATTTGA 2334
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2121 ATCCAGATCTGATACTAAAAGTTCAGTTGACAAAGCTAAATCGGAGAAATCTCTATTTGA 2180
Query 2335 CCACCTTTGCCCACTGCTTATATTAAGACTGCTTCCCCAAAGAGTGTTTGATGATATTGA 2394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2181 CCACCTTTGCCCACTGCTTATATTAAGACTGCTTCCCCAAAGAGTGTTTGATGATATTGA 2240
Query 2395 TTCTTCTACAATTTATGGTAAATTCCTCAGCGGGGACTCTGTGAATGACTACCAAGACAT 2454
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2241 TTCTTCTACAATTTATGGTAAATTCCTCAGCGGGGACTCTGTGAATGAGTACCAAGACAT 2300
Query 2455 CAAGTTTGAGGATTGTCAATGCATTGCTACTTTCATTTTGGAAAGGGCATTTTCTAAGTT 2514
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2301 CAAGTTTGAGGATTGCCAATGCATTGCCGCTTTCATTTTGGAAAGGGCATTTTCTAAGTT 2360
Query 2515 TGAATTTGAAGAAGTTCGGAAACTCTCTGCTGAGTTATGTGGACGTCTCCATCCCCAGGT 2574
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2361 CGAATTTGAAGAAGTTCGGAAACTCTCTGCTGAGCTATGTGGACGTCTCCATCCCCAGGT 2420
Query 2575 GCTATTTCCAACTGTTTTATTGCAACTCGAAAAGGCCACAGAGATACAAGACAGCCTCAA 2634
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 2421 GCTATTTCCAACTGTTTTATTGCAACTTGAAAAGGCCACAGAGCTACAAGACAGCCTCAA 2480
Query 2635 GATTAAAGCTTGCCTATTTTCTATATGCACATCTCTTATGGTCCGAGGCTGGGAGTCTCT 2694
||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| |
Sbjct 2481 GATTAAAGCTTGCCTATTTTCTATATGCACATCCCTTGTGGTTCGAGGCTGGGAGTCTTT 2540
Query 2695 CTCACACAGAGTAACACCTAAGATCAGGAAAGTCCTGGAAAATATTTTGTTATGGCCTTC 2754
||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2541 CTCACACAGTGTGACACCTAAGATCAGAAAAGTCCTGGAAAATATTTTGTTATGGCCTTC 2600
Query 2755 TGTTGAAGATGAAATTTCCAAAGTACAACATGGGTGCATTGATTGTCTGGCACTGATGAT 2814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2601 TGTTGAAGATGAAATTTCCAAAGTACAACATGGGTGCATTGATTGTCTGGCACTGATGAT 2660
Query 2815 ATGTGCTGAACTGCAACATCTTAAATCTTCAAAAACATCTGGAGGAGAAAAAATACGTTC 2874
|||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 2661 ATGTGCTGAACTTCAACATCTTAAATCTTTGAAAACATCTGGAGGAGAACAAATACGTAC 2720
Query 2875 AACAG-GGAAGGACACATCTGGTTATTCTGTCCTAGATTACACTATCCATTGTTTAATAG 2933
||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||| |||
Sbjct 2721 AACAGAGGA-GGACACATCTGGTAATTCTGTCCTAGATTACACGATCCATTGTTTAGTAG 2779
Query 2934 AAGACCGAAGTAACTGCTCGTCTATCCCAAAGCTGAGTACTGATATCCTAACTTGTGAAA 2993
||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2780 AAGACAGAAGTAACTGCTCGTCTATCCCAAAGCTGAGTACTG------------GTGAAA 2827
Query 2994 ATCCTCTTCCTATTCCATTTCGTCTATGCATGGCAAATGTTATCATCAGTGCTTGTCaaa 3053
||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 2828 ATCCTCTTCCTATTCCATTTCGTCTGTGCATGGCAAATGTGATCATTAGTGCTTGTCAAA 2887
Query 3054 aaaaCCCTGAGTCTTCCAAGAAGACTTTTGCCCGAAAAGCTCTTCCGCCTCTTATTCATT 3113
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 2888 AAATCCCCGAGTCTTCCAAGAAGACTTTTGCTCGAAAAGCTCTTCCGCCTCTTGTTCATT 2947
Query 3114 CCCTCAAGGTCATATCTGTACCGGAGGTCCGTGCAGCTTGTATCCAGGTCTTATTCTCGG 3173
|||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||
Sbjct 2948 CCCTCAAGGTCATATCTGCACCTGAGGTCCGTGCAGCCTGTATCCAAGTCTTATTCTCGG 3007
Query 3174 CCACATA-TCATCTGAAGTCCACACTTCTTCCGGTTTCATCTGATCTGCTGAAGCTTTCC 3232
||| || | |||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 3008 CCATGTACT-ATCTTAAGTCCACACTTCTTCCTGTTTCATCTGATCTACTGAAACTTTCC 3066
Query 3233 CTGAGATTTCTTGAACAAGGATCCGAAAAGGAAAAGCTGGCTGGCGCAAAACTAATGGCA 3292
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 3067 CTGAGATTTCTTGAACAAGGATCCGAAAAGGAAAAGCTGGCTGGCGCTAAACTGATGGCA 3126
Query 3293 TCACTGATGGCGAGTGAAGACGTGATACTGGAAAACATTTCAGAGGGATTGCTCGAAGCA 3352
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3127 TCTCTGATGGCGAGTGAAGACATGATACTGGAAAACATTTCAGAGGGATTGCTCGAAGCA 3186
Query 3353 AGATCAGTTCTGTCCAAAGCATCTTTGTCAGACCCTTCTCGAGACGTACGTGAAGTCTGC 3412
||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 3187 AGATCAGTTCTATCCAAAGCATCTTTGTCAGATCCTTCTCAAGACGTACGTGAAGTCTGT 3246
Query 3413 GCTAAGCTATTGGCATGCATAACGCCGTTGTAAAGCCATTTGttcttcttcttcttcttc 3472
|||||||| |||||||||||||||||||||||| || | |||||||||| || || |
Sbjct 3247 GCTAAGCTCTTGGCATGCATAACGCCGTTGTAA--CC-TGTGTTCTTCTT-TT-TT-T-- 3298
Query 3473 ttTTTTGCCACTTTTGGTTTGTTCTCGCGTGCCAATGAAGTCGGTATGTAGATATGTTGT 3532
|||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 3299 ------GCCACTTTTGGTTTGTTC--G--TGCCAATGAAGTCGGTATGTAGATATGTGGT 3348
Query 3533 AGCAAACGATGGCCTAACTATAATCTTATGTAATATGCAAAGACCAAATACGTTTTAGTA 3592
|||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 3349 AGCAAACGGTGGCCTAACTTTAATATTATGTAATATGCAAAGACCAAATACGTTTTAGTA 3408
Query 3593 ACCAGTTATGGT-G-AACCTGCAGCTACCATTTTGT 3626
|||||||||||| | ||||||||||||||||| |||
Sbjct 3409 ACCAGTTATGGTCGGAACCTGCAGCTACCATTGTGT 3444
Score = 1218 bits (659), Expect = 0.0
Identities = 784/842 (93%), Gaps = 18/842 (2%)
Strand=Plus/Plus
Query 156 TGGAGGAGGAATTGATACGAAGATCAGAACCGGAGTCTCTAGTCTCCGTCACTGTAGCTA 215
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 41 TGGAAGAGGAATTGATACGAATATCAGAACCGGAGTCTCTAGTCTCCGTCACTGTAGGTA 100
Query 216 GGTTCATGAGTACGCTTCTCTCAGCTCGCCCTAAAAAGCTACGAGAGTCTATTTCTCGTC 275
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 101 GGTTCATGAGAACGCTTCTCTCAGCTCGCCCTAAAAAGCTACGAGAGTCTGTTTCCCGTC 160
Query 276 TAACTCCTGATTCTCAAAAGGGTGT-CTCAGGCTCTATCGATGAGGCACTCTGGTTTTTG 334
| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 161 TTTCTCCTGATTCTCAAAAGGGT-TCCTCAGGCTCTATCGATGAGGCACTCTGGTTTTTG 219
Query 335 GAAAAGTGCGTTATAGACGCTGCTGAGAGAGACGAAGCCATGAGTGAAATTCTTGTACCC 394
||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 220 GAAAAGTGCGTTAGAGACGCTGCTCAGAGAGACGAAGCCATGGGTGAAATTCTTGTACCC 279
Query 395 ATTATCGAACATACATTAAGGTTTAAGGATTCTAAGCATGGTAACCCAGCTATGATACTT 454
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 280 ATTATCGAACATACATTAAGGTTTAAGGATTCTAAGCATGGTAATCCAGCTATGATACTT 339
Query 455 CTAAATTGGCTATTTCAAGATGAAGTTCTCTTTCAAGCCGTTTCGAGAAATCTTTCGAAT 514
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 340 CTAAATTGGCTATTTCAAGATGAAGTTCTCTTTCAAGCCCTTTCGAGAAATCTTTCGAAT 399
Query 515 ATCATTT-TGAGGAACGAGGACAGGTTTTTAGCGCTTGGATGGTGTTTACTTATCCGACG 573
||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 400 ATCATTTCT-AGGAACGAGGATAGGATTTTAGCGCTTGGATGGTGTTTACTTATCCGACG 458
Query 574 TCTTGTAGAATGTGAGGATACTGGGGATCAAGGTTTTTGGCATGGAATTAGGGAGAAACA 633
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 459 TCTTGTAGAATGCGACGATACTGGGGATCAAAGTTTTTGGCATGGAATTAGGGAGAAACA 518
Query 634 TTCTATGTTTGTGGAGATTGTTTCATCTTGTGTGCCTCACTTGTTGATGATTGTACGCAA 693
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 519 TTCTATGTTTGTGGAGATTGTTTCATCTTGTGTGCCTCACTTGTCGATCATTGTACGCGA 578
Query 694 TGGAAGGTATAAAACTTCTTTGTCAATGGATGGATATGAGGTGCCATCTCGTCTTTCTCT 753
|||||| || || | || |||||||||||| ||||||||||||||||||||
Sbjct 579 TGGAAGC-AT-----TT-TA---CA--GGATGGATATGAAGTGCCATCTCGTCTTTCTCT 626
Query 754 TTCTGCTGCTGATTGCTTGCTGTCAATTACTGGAGCCTTAGCAAAGAGGGATAATACTCT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TTCTGCTGCTGATTGCTTGCTGTCAATTACTGGAGCCTTAGCAAAGAGGGATAATACTCT 686
Query 814 GATCAATAGACCAAAGTCACCAACCATTACGGGGTCTCATCAACCTGTTGCTTTGACACC 873
| |||||| ||||||| || ||||||||| ||||||||||||||| |||||||||| |||
Sbjct 687 GGTCAATAAACCAAAGCCATCAACCATTATGGGGTCTCATCAACCCGTTGCTTTGATACC 746
Query 874 TAATATTAGTGAGaa-aaaaaaaaGGCCGACTTCTCTACCTGAAGACTCAAACATTGAGA 932
| ||||||| ||||| ||||||||| | || || ||||||||||||||| |||||||||
Sbjct 747 TCATATTAGCGAGAAGAAAAAAAAG-CAGAGTTTTCTACCTGAAGACTCGAACATTGAGG 805
Query 933 CAAATTGTATACTGTGGAACCACATGGAGGATCTGACACGCCTTGTACAATGTCTTTTTG 992
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 806 CAAATTGTATACTGTGGAACCACCTGGAGGATCTGACACGCCTTGTACAATGTCTCTTTG 865
Query 993 CT 994
||
Sbjct 866 CT 867
Score = 922 bits (499), Expect = 0.0
Identities = 638/700 (91%), Gaps = 30/700 (4%)
Strand=Plus/Plus
Query 1341 AGGGAAAGAAATTTGAGAGCATACTATCAGAGTATGGAATGAAGCTCGTGCCTAT-TCTT 1399
||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||
Sbjct 1073 AGGGAAAGAAATTTGAGTGCATACTATCAGAGTATGGAATGAGGCTCGTGCCT-TGTCTT 1131
Query 1400 CTACATCAGCTTCGCAGTAACAATGAAGAGATATCAGAAGGCGTTGTGGCTATATTTAAG 1459
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1132 CTACATCAGCTTCGCAGTAACAATGAAGAGATATCAGAAGACGTTGTTGCTATATTTAAG 1191
Query 1460 GCAGTCTTCTTTAAATTACAATCTCAGTCCGGAGACAGCTTCTCTGATACAATGTGCATG 1519
|||||| |||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1192 GCAGTCATCTTTAAACTACAATCTCAGTCCGGAGACAGCTTTTCGGATACAATGTGCATG 1251
Query 1520 GACGTTGTGATACCATCACTGCTTCACCTTCTTGATGAAAGGGATGGCGCGGCCAAAGCT 1579
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GATGTTGTGATACCATCGCTGCTTCACCTTCTTGATGAAAGGGATGGCGCGGCCAAAGCT 1311
Query 1580 GTTAGTGTCCTGCTGGCAGACTATTGTTCCAAAAATGCAGGTAATAGCTGTCTCAGTGAA 1639
||||||||||| || | | | || | | | || | | || || ||||
Sbjct 1312 GTTAGTGTCCTCCT--C-G-C---TG--------A--C---T-ATTG-T-TC-CAATGAA 1347
Query 1640 ATTCTACAACGCCTTGCTTCTGGAACTACTGTGCAAAGGCTGAATTCTTTGGATGTGATA 1699
||||| |||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1348 ATTCTGCAACGCCTTGTTTCTGGAACTTCTGTGCAAAGGCTGAATTCTATGGATGTGATA 1407
Query 1700 TCAGAAGTAATCCTTATGTCAAAAGATTCATTTCCTTCTCATATACCCTGGAAAGAGATT 1759
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1408 TCAGAAGTAATCCTTATGTCAAAAGATTCATTTCCTTCTCATATACACTGGAAAGAGATT 1467
Query 1760 GCGGACTGCTTGTTAAAGTGCCTTG-ATGACGAGGAAACATGTATCTGTAAACAAACTTC 1818
||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 1468 GCGGACTGCTTGTTAAAGTGCCTTGGA-GACGAGGAAACTTGTATCTGTAAACAAACTTC 1526
Query 1819 AGAGTTGCTGAAGTCAATCGAGCCATCATTTGTGCTACC-GAATTTAGTAAACCTCATTT 1877
|||||||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||
Sbjct 1527 AGAGTTGCTGAAGTCAATTGAGCCATCTTTTGTGCTACCAGA-TTTAGTAACCCTCATTT 1585
Query 1878 ATGCACCCAATGGAAAAGTACAATCATCAGCTACAGAAACCTTGCTTGGGGTCCTGAAAC 1937
|||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 1586 ATGCACCCAATGGAAAAGTACACTCATCAGCTACCGAAACCTTACTTGGGGTCCTGAAAC 1645
Query 1938 ACCATAAGGAGGATTTTGATGTTATATGTATGTTGCTGACCAGTCTTAGTAATATCCAAG 1997
| ||||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 1646 ATCATAAGGAGGATTCTGATGTTATATGTATGTTGCTGACCTGTCTAAGTAATATTCAAG 1705
Query 1998 CTTTGGATACTGCAGAAAGTAATGGACATTCCACTGAAGG 2037
||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1706 CTTTGGATACTTCAGAAAGCAATGGACATTCCACTGAAGG 1745
Score = 316 bits (171), Expect = 6e-85
Identities = 196/208 (94%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 1028 GGGTTAAGTCAAGTGCTGAAATGGTTAGA-GGAGTTGAAAGAGCATCATGGTGGCTCCCA 1086
|||||||||||||||||||| |||||| | ||||| |||||||||||||||||||||||
Sbjct 868 GGGTTAAGTCAAGTGCTGAAGTGGTTA-ATTGAGTTAAAAGAGCATCATGGTGGCTCCCA 926
Query 1087 AAAGGAGGCAGGCACAGAGGTATCTATGGGTGGAGCTCTACTGCTCTCTTCTTGTTGGAA 1146
|||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 927 AAAGGAAGCAGGCACAGCGGCATCTGCGGGTGGAGCTCTACTGCTCTCTTCTTGTTGGAG 986
Query 1147 GCATTACAGTGTCTTGCTCCACATGGAAGATCAAAAGTTCTCAAAGATTAGTAAGGAATT 1206
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 987 GCATTACAGTGTCTTGCTCCACATGGAAGATCAAAAGTTTTCAAAGATTAGTAAGGAATT 1046
Query 1207 GTTGGAGCAATATTTGTCTGGTATTAAG 1234
||||||||||||||||||||||||||||
Sbjct 1047 GTTGGAGCAATATTTGTCTGGTATTAAG 1074
Score = 54.7 bits (29), Expect = 5e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 56 TTCGTCGTCGTCTCCGCGAGATTGCTACAAAT 87
||| ||||||||||||||||||||||||||||
Sbjct 1 TTCTTCGTCGTCTCCGCGAGATTGCTACAAAT 32
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139975753494
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5