BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57580.1
Length=1889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938652 jgi|Araly1|938652|scaffold_502843.1 1144 0.0
Ahg486208 jgi|Araly1|486208|fgenesh2_kg.5__2200__AT3G57590.1 394 1e-108
Ahg338947 jgi|Araly1|338947|fgenesh1_pg.C_scaffold_2001046 139 7e-32
Ahg923021 jgi|Araly1|923021|scaffold_104302.1 67.6 3e-10
Ahg336209 jgi|Araly1|336209|fgenesh1_pg.C_scaffold_1002774 60.2 5e-08
> Ahg938652 jgi|Araly1|938652|scaffold_502843.1
Length=1075
Score = 1144 bits (619), Expect = 0.0
Identities = 907/1041 (87%), Gaps = 39/1041 (4%)
Strand=Plus/Plus
Query 639 TTCTCAGGAGATGTTAGCCACTACATTTGTAGCTATGCCTCAGGTTTGCTCTATTTTCCT 698
||||||||||| ||||||| ||| |||||||||||||||||||||| |||| || |||
Sbjct 55 TTCTCAGGAGACATTAGCCAATACGCTTGTAGCTATGCCTCAGGTTTGATCTACTTCCCT 114
Query 699 GCTGTGCATATCGTTGATACTGAGACGATTGTGATTTGTAACCCTATCACCGGAATGTAT 758
| ||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 115 GTTGTGCGGATCATTGATACGGACACGATTGTGATTTGTAACCCTATCACCGGAATGTAT 174
Query 759 ACGGGCTTACCTGTGA-TCATGAAGGACAGAAGGTCTCGAGGCTTTTTAGTGTTTGATCC 817
||||||||||| | |||||||| |||| ||||| ||||||||||| |||||||||
Sbjct 175 GTGGGCTTACCTG-AAGTCATGAAGTACAGCAGGTCGAAAGGCTTTTTAGGGTTTGATCC 233
Query 818 CGTTGATAAGCGATTCAAGGCTTTTGA-TACTCATTTCATTCTAACATTAGGATCTGGAG 876
| ||||||||| ||||||||| || || || | ||| |||||||||||||||||||||||
Sbjct 234 CATTGATAAGCAATTCAAGGCATTGGATTA-TGATTCCATTCTAACATTAGGATCTGGAG 292
Query 877 AACTCAAGTGGAGGGA-AAAGAATATCCCTTGTCCTCTGTATGAGCGTTGTTCTTCGAAT 935
|||||||||||| ||| |||| |||||| | |||||||||||||||||||| |||||| |
Sbjct 293 AACTCAAGTGGA-GGATAAAGGATATCCATGGTCCTCTGTATGAGCGTTGTCCTTCGACT 351
Query 936 CAAGGGATATGCATTAATGGGGTTTTGTATTACTTAGCTAAAACTGT-CTTAGTTGAAAC 994
|||||||||||||| ||||||||||||||||||||||||| |||| | ||||| ||||||
Sbjct 352 CAAGGGATATGCATCAATGGGGTTTTGTATTACTTAGCTAGAACT-TACTTAGCTGAAAC 410
Query 995 AGTTTTTGGATTGACGTTTTTGATAGTTCGCTTTGATGTTAGTTCTGAGGAGTTCAAGTT 1054
| | || | |||||||||||||||||||||||| |||||||||||||||||
Sbjct 411 A----CT---TT--C---TTTGATAGTTCGCTTTGATGTTAGCTCTGAGGAGTTCAAGTT 458
Query 1055 TATTGACGCTGCCCGCTTTAATGATCGTCTAAAGGATCCTACTAGATTGAGTTTGGTCAA 1114
||||||||| || ||||| |||||| | || ||||||||||| ||||||| ||||||||
Sbjct 459 TATTGACGCAGCATGCTTTGATGATCATATAGAGGATCCTACTGGATTGAGGTTGGTCAA 518
Query 1115 CTATATGGGTAAATTAGGTGTGACTGATTGCAACTG-TGTTGACGCTGGTGGAAGACGTA 1173
||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 519 CTATATGGGTAAATTAGGTGTGACTAATTGCAA-TAATGTTGACGCTGGTGGAAGACGTA 577
Query 1174 CCGTTGAGTTGTGTCTGTGGGTTCTAGAGGATGTTGAGAAACTGGAATGGGTGAAGTATG 1233
| |||||||||||| ||||||||||||||||||| ||||||| ||| |||||||| ||||
Sbjct 578 CAGTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGAAACAGGATTGGGTGAAATATG 637
Query 1234 TCTACACTCTGCCTGAGAATGAAGTCCTTGCTTCCTGCGAATTTTCAGTTGCTGGAGTGA 1293
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 638 TCTACACTCTGCCAGAGAATGAAGTCCTTGGTTCCTGCGAATTTTCAGTTGCTGGAGTGA 697
Query 1294 CTGCTACTGGGGATATTGTCTTGTGTATGAAGTATACATGTAAACCGTACTATGTGTTCT 1353
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 698 CTGCAACAGGGGATATTGTCTTGTGTATGAAATATACATGTAAACCGTACTATGTTTTCT 757
Query 1354 ACTTCAATCCCGAAAAGAAAACTCTGCAAACTGTTGAAATCCAAGGCTTTGGAGCTAAGC 1413
||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||| |||
Sbjct 758 ACTTCAATCCCGAAAAGAACACTCTCCAAAGTGTTGAAATCCAAGGTTTTGGAGCTGAGC 817
Query 1414 TTGAAGAGGTTGAGAATCGTGGTGAAGTTTTTGCCTATGTTGACTATGTAGAGGATCTTA 1473
|||||| |||||||| |||||||||||||| || || |||||||||||||||||||||||
Sbjct 818 TTGAAGCGGTTGAGACTCGTGGTGAAGTTTATGGCTTTGTTGACTATGTAGAGGATCTTA 877
Query 1474 GTCTAAACGATGCGAAGCAACTCAAGTCAAGCATTTCTCATGTCAAGAGTCTCTGCCCCT 1533
|| |||||||||| ||||| ||||||||||||||||||||||||||| || |||| |||
Sbjct 878 GTGTAAACGATGCAAAGCAGTTCAAGTCAAGCATTTCTCATGTCAAGACTCGCTGCTCCT 937
Query 1534 GCTGTCAAAA-GTTAGTGCAGCCTGAAAACATCGGGGAAGTGGTATGATGATGGTGTGAG 1592
||||| || | |||| | | ||||| ||||||||||||| || | || | | | |||
Sbjct 938 GCTGT-AACACGTTA-T--ATCCTGACAACATCGGGGAAGGGGAA-GAGG-TAGA-TGA- 989
Query 1593 TAGGGagaagaaatgaaagatacatcagtgaagatgaagacataagaagaagagaagatt 1652
| || | |||| || || ||||||||||||| |||| | ||||||||||||||| |
Sbjct 990 T-GGT-GT-GAAA-GA--GA--CATCAGTGAAGATCAAGAAAGAAGAAGAAGAGAAGAGT 1041
Query 1653 ataagagaGTAAAACGATGAG 1673
|| |||||||||||| |||||
Sbjct 1042 ATTAGAGAGTAAAACAATGAG 1062
> Ahg486208 jgi|Araly1|486208|fgenesh2_kg.5__2200__AT3G57590.1
Length=1206
Score = 394 bits (213), Expect = 1e-108
Identities = 388/468 (83%), Gaps = 30/468 (6%)
Strand=Plus/Plus
Query 382 TCCCAACTGATCTCATTCGCGAGATCTTCGCGAGATTGCCTTCGAAGTCAGTGGCTAGG- 440
||||||||||||||||| |||||| ||| |||||||||| |||||||||| ||| ||
Sbjct 11 TCCCAACTGATCTCATTATCGAGATATTCTCGAGATTGCCGGCGAAGTCAGTCGCT-GGA 69
Query 441 TTTCGTACACTGTCCAAGCAGTGGGCGTCTATACTTCGCAGTACTGATTTCACCAAGCTG 500
|||||||||||||| ||||| |||||||||| ||||||||| | | ||||||| ||||
Sbjct 70 TTTCGTACACTGTCGAAGCACTGGGCGTCTACGCTTCGCAGTCCAGGTTTCACCGAGCTC 129
Query 501 TTCCTGAGCAGATCCTCGAATCGTCCACGTCTCTTGTTTGCTGTTGAACGATAC-AAATG 559
|||| || |||||||||||||||||| ||||||||||| || | | ||| || |||||
Sbjct 130 TTCCAGACCAGATCCTCGAATCGTCCGCGTCTCTTGTTGGC-G--G-CCGA-ACGAAATG 184
Query 560 TAATGAGTGGCAATTTTTCTCATCGCCTCAGTCACAGAATCGGTATGAGAAATCAG-CTC 618
|||||||| || ||||| ||||||||| |||||||||| |||||||| || | |||
Sbjct 185 --GTGAGTGGCTCTTCTTCTCGTCGCCTCAGCCACAGAATCGATATGAGAAGTC-GTCTC 241
Query 619 ATTTAGAGTT-TCATAGCAAGTTCTCAGGAGATGTTAGCC-ACTACATTTGTAGCTATGC 676
|||| || || ||||| ||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 242 ATTTGGA-TTATCATACCAAGTTCTCAGGAGACGTTAGCCGA-TACATTTGTAGCTATGC 299
Query 677 CTCAGGTTTGCTCTATTTTCCTG--CTGT-GCATATCGTTGATACTGAGACGATTGTGAT 733
|||||||||||||||||||||| ||| || | || | | || | || ||||||
Sbjct 300 TTCAGGTTTGCTCTATTTTCCTGATTTGTGGC-TCTC-AAAAGA-TGCGTCGCCTGTGAT 356
Query 734 TTGTAACCCTATCACCGGAATGTAT-ACGGGCTTACCTGTGATC--ATGAAGG-ACAGAA 789
||||||||||||||||||||||||| | | ||||||||| ||| |||| || ||||||
Sbjct 357 TTGTAACCCTATCACCGGAATGTATGA-GAGCTTACCTG--ATCTGATGA-GGTACAGAA 412
Query 790 GGTCTCGAGGCTTTTTAGTGTTTGATCCCGTTGATAAGCGATTCAAGG 837
|||||||||||||||| ||||||| || ||||||||| ||||||||
Sbjct 413 ATTCTCGAGGCTTTTTAGGGTTTGATTCCATTGATAAGCAATTCAAGG 460
> Ahg338947 jgi|Araly1|338947|fgenesh1_pg.C_scaffold_2001046
Length=1011
Score = 139 bits (75), Expect = 7e-32
Identities = 243/321 (76%), Gaps = 24/321 (7%)
Strand=Plus/Plus
Query 1101 TTGAGT-TTGGTCAACTATATGGGTAAATTAGGTGTGACTGATTGCAACTGTGTTGACGC 1159
||| || || || ||||||| ||| |||||||||| || | |||| | | || ||| |
Sbjct 390 TTGTGTATTAGTAAACTATAAGGGCAAATTAGGTGGGATTTATTGGGAGTATGCTGATGA 449
Query 1160 TGGTGGAAGACGTACCGTTGAGTTGTGTCTGTGGGTTCTAGAGGATGTTGAGAAAC-TGG 1218
||||||| | | | ||||||| | | ||||||||||||||||| |||||||| ||
Sbjct 450 TGGTGGATTTCCT-C--TTGAGTTATCTATGTGGGTTCTAGAGGATCTTGAGAAAAATG- 505
Query 1219 AATGGGT-G-AAGTATGTCTACACTCTGC---CTGAGAAT-GAAGTCCTT--GCTTC-CT 1269
||||| | | || |||| ||||||| || |||| ||| | ||| || | || ||
Sbjct 506 AATGG-TCGGAA-TATGCCTACACTTTGAAGGCTGATAATAGC-GTCGTTAAGGTTAACT 562
Query 1270 GCGAAT-TTTCAGTTGCTGGAGTGACTGCTACTGGGGATATTGTCTTGTGT-ATGAAGTA 1327
| ||| |||| |||| ||| |||||||||| || || ||||| ||| | | | ||||
Sbjct 563 AC-AATCTTTCTGTTGTTGGGGTGACTGCTAGAGGTGAAATTGTTTTG-GCCAAGCAGTA 620
Query 1328 TACATGTAAACCGTACTATGTGTTCTACTTCAATCCCGAAAAGAAAACTCTGCAAACTGT 1387
| |||||||||||| ||||| |||||||| |||||||||| ||| ||||| | || |||
Sbjct 621 TGCATGTAAACCGTTTTATGTTTTCTACTTTAATCCCGAAAGGAACACTCTCCTAAGTGT 680
Query 1388 TGAAATCCAAGGCT-TTGGAG 1407
|||||||||||| | ||||||
Sbjct 681 TGAAATCCAAGG-TGTTGGAG 700
> Ahg923021 jgi|Araly1|923021|scaffold_104302.1
Length=1220
Score = 67.6 bits (36), Expect = 3e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 937 AAGGGATATGCATTAATGGGGTTTTGTATTACTTAG 972
||||||||||||||||||||||||||||||||||||
Sbjct 640 AAGGGATATGCATTAATGGGGTTTTGTATTACTTAG 675
> Ahg336209 jgi|Araly1|336209|fgenesh1_pg.C_scaffold_1002774
Length=645
Score = 60.2 bits (32), Expect = 5e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 940 GGATATGCATTAATGGGGTTTTGTATTACTTAGCT 974
|||||||||||||||||||||||||||||| ||||
Sbjct 275 GGATATGCATTAATGGGGTTTTGTATTACTCAGCT 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70962126435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5