BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57590.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486208 jgi|Araly1|486208|fgenesh2_kg.5__2200__AT3G57590.1 1701 0.0
Ahg938652 jgi|Araly1|938652|scaffold_502843.1 545 2e-154
Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1 69.4 6e-11
> Ahg486208 jgi|Araly1|486208|fgenesh2_kg.5__2200__AT3G57590.1
Length=1206
Score = 1701 bits (921), Expect = 0.0
Identities = 1115/1209 (92%), Gaps = 12/1209 (1%)
Strand=Plus/Plus
Query 1 ATGGAACCAATCCCAAATGATCTCATTCTCGAGATCTTCTCGAGATTGCCGGCGAAGTCA 60
|||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAACCAATCCCAACTGATCTCATTATCGAGATATTCTCGAGATTGCCGGCGAAGTCA 60
Query 61 GTCATTGGATTTCGTAC-CTTGTCGAAGCACTGGGCGTCTATGCTTCGCAGTCCAGTTTT 119
||| |||||||||||| | ||||||||||||||||||||| |||||||||||||| |||
Sbjct 61 GTCGCTGGATTTCGTACAC-TGTCGAAGCACTGGGCGTCTACGCTTCGCAGTCCAGGTTT 119
Query 120 CACCGAGCTCTTCCTGACCAGATCCTCGAATCGTCCACGTCTGC-TGTTTGCTGCCGAAC 178
|||||||||||||| ||||||||||||||||||||| ||||| | |||| || |||||||
Sbjct 120 CACCGAGCTCTTCCAGACCAGATCCTCGAATCGTCCGCGTCT-CTTGTTGGCGGCCGAAC 178
Query 179 GAAATGGTGAGTGGCTCTTCTTCTCGTCGCCGCAGCCACAGAATCGATATGAGAAGTCTT 238
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 179 GAAATGGTGAGTGGCTCTTCTTCTCGTCGCCTCAGCCACAGAATCGATATGAGAAGTCGT 238
Query 239 CTCATTTGGATTATCATACAAAATTCTCAGGAGACGTAAGCCGATTCATTTGTAGCTATG 298
||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||
Sbjct 239 CTCATTTGGATTATCATACCAAGTTCTCAGGAGACGTTAGCCGATACATTTGTAGCTATG 298
Query 299 TC-TCAGGTTTGCTCTGTTTCCCTGATTTGTGGCTCTCAAAAGATGCATCGCCTGTGATT 357
| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 299 -CTTCAGGTTTGCTCTATTTTCCTGATTTGTGGCTCTCAAAAGATGCGTCGCCTGTGATT 357
Query 358 TGTAACCCTACCACAGGAATGTATGAGAGCTTACCTGATCTGATGAGGTACAAAAATGCT 417
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 358 TGTAACCCTATCACCGGAATGTATGAGAGCTTACCTGATCTGATGAGGTACAGAAATTCT 417
Query 418 CGAGGCTTTCTAGGGTTTGATCCCATTGGTAAGCAATTCAAGGTATTGTCTGAGGCTTAT 477
||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 418 CGAGGCTTTTTAGGGTTTGATTCCATTGATAAGCAATTCAAGGTATTGTCTGAGGCTTAT 477
Query 478 CCATTTTCTGATCAAAGGGAACATCATGAGATTCTGACATTAGGAACT-GAGGAACTGAG 536
|| |||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 478 CCGTTTTGTGATCAAAGGGAACATCATGAGATTCTGTCATTAGGAACTGGA-GAACTGAG 536
Query 537 CTGGAGGAGTAATATCATTAGTTGTCCTGCATATGATCGTTCTTTGAGTGAAGGAATATG 596
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 537 CTGGAGGAGTAATATCATCAGTTGTCCTGCATACGATCGTTCTTTGAGTGAAGGGATATG 596
Query 597 TATCAATGGAGTTTTGTATTACTTAGCTCAGACTCTTGGTGTACCGTCTTGTGTGATCAT 656
|||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||
Sbjct 597 CATCAATGGAGTTTTCTATTACTTAGCTCAGACAGTTGGGGTGTCGTCTTGTGTGATCAT 656
Query 657 TTGCTTTGATGTAAGGTCTGAGGAATTTAAGTATT-TTGACGCAGGATGCTTTAATGATC 715
| || ||||||| ||||||||||| || |||| || ||||||||| ||||||||||||||
Sbjct 657 TCGCGTTGATGTTAGGTCTGAGGAGTTCAAGT-TTATTGACGCAGAATGCTTTAATGATC 715
Query 716 AACTTGATGATACTAGTGGGTTGATTTTGGTAAACTATGAGGGTAAATTAAGTGGGATTA 775
|||||||||||||||||| |||||||||||| ||||||| |||||||||| | |||||||
Sbjct 716 AACTTGATGATACTAGTGAGTTGATTTTGGTCAACTATGTGGGTAAATTAGGAGGGATTA 775
Query 776 ATTGGAAGTATGGTCAAGCTGGTGAAAGGCGCACCGTTGAGTTG-CGTATGTGGGTTCTA 834
||||||||||| ||||||||||||||||||| |||||||||||| | ||||| |||||||
Sbjct 776 ATTGGAAGTATTGTCAAGCTGGTGAAAGGCGTACCGTTGAGTTGTC-TATGTCGGTTCTA 834
Query 835 GAGGATGCCGAGAAGCATGAATGGGTTAAATATGTGTACACTCTGCCGGAGAATGAAGTC 894
||||||| ||||||||| ||||||||||||||||| || | |||||| ||||||||||||
Sbjct 835 GAGGATGTCGAGAAGCAGGAATGGGTTAAATATGTCTATAGTCTGCCTGAGAATGAAGTC 894
Query 895 CTTGATTCCTGCGACTTTTCAGTTGCTGGAGTGACTACTAGAGGTGATATTGTTTTGTGT 954
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 895 CTTGATTCCTGCGATTTTTCAGTTGCTGGAGTGACCACTAGAGGTGACATTGTATTGTGT 954
Query 955 ATGAAATATACATGTAAACCGTTTTATGTGTTCTACTTCAATCCCGAGAGGAACACTCTC 1014
||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 955 ATGAAGTATACATGTAAACTGTTTTATGTGTTCTACTTCGATCCCGAGAGGAACACTCTC 1014
Query 1015 CAGAGCGTTGAAATCCAAGATTTTGGAGCTAACCTTGAAGCGGTTGAGAATTGTGGTAGA 1074
|| |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||
Sbjct 1015 CAAAGCGTTGAAATCCAAGGTTTTGGAGCTAACCTTGAAGCGGTTGGGAATCGTGGTAGA 1074
Query 1075 GTTTATGCTTTTGTTAACCATGTAGAGGATCTTCGGGTTAACAAAGGGAAGCAACTCAAG 1134
|||||||| |||||||||||||||||||||||| | ||| || | | ||||||||||||
Sbjct 1075 GTTTATGCCTTTGTTAACCATGTAGAGGATCTTAGTGTTGACGATGCAAAGCAACTCAAG 1134
Query 1135 TCAAGCATCTCTCAAGTCAAGCATCTCTGCTCATGCTGTAACAAAGTATCGCAGCCTGAT 1194
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct 1135 TCAAGCATCTCTCAAGTCAAGCATCTCTGCTCCTGCTGTAATAAAGTATCGCAGCCTAAT 1194
Query 1195 TATCATTAC 1203
|||||||||
Sbjct 1195 TATCATTAC 1203
> Ahg938652 jgi|Araly1|938652|scaffold_502843.1
Length=1075
Score = 545 bits (295), Expect = 2e-154
Identities = 567/693 (82%), Gaps = 40/693 (6%)
Strand=Plus/Plus
Query 508 ATTCTGACATTAGGAACT-GAGGAACT-GAGCTGGAGGAGT-AA-TATCAT-TAGTTGTC 562
||||| ||||||||| || || ||||| || ||||||| | || || || | | |||
Sbjct 271 ATTCTAACATTAGGATCTGGA-GAACTCAAG-TGGAGGA-TAAAGGAT-ATCCA-TGGTC 325
Query 563 CTGC-ATATGATCG-T-T-CTTTGAGTGAAGGAATATGTATCAATGGAGTTTTGTATTAC 618
|| | ||||| || | | ||| || | |||| ||||| |||||||| ||||||||||||
Sbjct 326 CT-CTGTATGAGCGTTGTCCTTCGACTCAAGGGATATGCATCAATGGGGTTTTGTATTAC 384
Query 619 TTAGCTCAG-AC-T-CTT-GGTG-TAC-CGTCTTGTGTGATCA-TTTGCTTTGATGTAAG 671
|||||| || || | ||| | || || | | || | |||| | || |||||||||| ||
Sbjct 385 TTAGCT-AGAACTTACTTAGCTGAAACAC-T-TTCTTTGAT-AGTTCGCTTTGATGTTAG 440
Query 672 GTCTGAGGAATTTAAGTATT-TTGACGCAGGATGCTTTAATGATCA-ACTTGATGATACT 729
|||||||| || |||| || ||||||||| ||||||| ||||||| | | || ||| ||
Sbjct 441 CTCTGAGGAGTTCAAGT-TTATTGACGCAGCATGCTTTGATGATCATA-TAGAGGATCCT 498
Query 730 AGTGGGTTGATTTTGGTAAACTATGA-GGGTAAATTAAGTGGGATTAATTGGAAGT-ATG 787
| ||| |||| ||||| |||||| | |||||||||| ||| || |||||| || | |||
Sbjct 499 ACTGGATTGAGGTTGGTCAACTAT-ATGGGTAAATTAGGTGTGACTAATTGCAA-TAATG 556
Query 788 GTCAAGCTGGTGAAAGGCGCACCGTTGAGTTGCGTATGTGGGTTCTAGAGGATGCCGAGA 847
| | ||||||| ||| || || ||||||||| ||||||||||||||||||||| |||||
Sbjct 557 TTGACGCTGGTGGAAGACGTACAGTTGAGTTGTGTATGTGGGTTCTAGAGGATGTCGAGA 616
Query 848 AGCATGAATGGGTTAAATATGTGTACACTCTGCCGGAGAATGAAGTCCTTGATTCCTGCG 907
| || || ||||| |||||||| ||||||||||| |||||||||||||||| ||||||||
Sbjct 617 AACAGGATTGGGTGAAATATGTCTACACTCTGCCAGAGAATGAAGTCCTTGGTTCCTGCG 676
Query 908 ACTTTTCAGTTGCTGGAGTGACTACTAGAGGTGATATTGTTTTGTGTATGAAATATACAT 967
| ||||||||||||||||||||| | | ||| |||||||| |||||||||||||||||||
Sbjct 677 AATTTTCAGTTGCTGGAGTGACTGCAACAGGGGATATTGTCTTGTGTATGAAATATACAT 736
Query 968 GTAAACCGTTTTATGTGTTCTACTTCAATCCCGAGAGGAACACTCTCCAGAGCGTTGAAA 1027
||||||||| ||||| ||||||||||||||||| | |||||||||||| || |||||||
Sbjct 737 GTAAACCGTACTATGTTTTCTACTTCAATCCCGAAAAGAACACTCTCCAAAGTGTTGAAA 796
Query 1028 TCCAAGATTTTGGAGCTAACCTTGAAGCGGTTGAGAATTGTGGTAGA-GTTTATG-CTTT 1085
|||||| |||||||||| | |||||||||||||||| | ||||| || ||||||| ||||
Sbjct 797 TCCAAGGTTTTGGAGCTGAGCTTGAAGCGGTTGAGACTCGTGGT-GAAGTTTATGGCTTT 855
Query 1086 TGTTAACCATGTAGAGGATCTTCGGGTTAACAAAGGGAAGCAACTCAAGTCAAGCATCTC 1145
||| || |||||||||||||| | || ||| | | ||||| ||||||||||||| ||
Sbjct 856 -GTTGACTATGTAGAGGATCTTAGTGTAAACGATGCAAAGCAGTTCAAGTCAAGCATTTC 914
Query 1146 TCAAGTCAAG-CATCTCTGCTCATGCTGTAACA 1177
||| |||||| | || |||||| ||||||||||
Sbjct 915 TCATGTCAAGAC-TCGCTGCTCCTGCTGTAACA 946
> Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1
Length=1705
Score = 69.4 bits (37), Expect = 6e-11
Identities = 174/236 (74%), Gaps = 25/236 (11%)
Strand=Plus/Plus
Query 812 TTGAGTTGCGTATGTGGGTTCTAGAGGATGCCGAGAAGCATGAA-TGGGTTAAA-TATGT 869
|||||||||||||||||||||||||||| ||||| ||| | ||| | ||| ||||
Sbjct 945 TTGAGTTGCGTATGTGGGTTCTAGAGGACAAGGAGAAA-ATGGAGTGG-TCAAAGTATGC 1002
Query 870 GTACAC-TCTGCCGGA-GAATGAAGTCCTTGATTCCTGCGACTTTTC-AGTTGCTGGAGT 926
|||| | || ||| || | || || ||| | | || |||| | ||| ||||||
Sbjct 1003 CTACAAGT-TGAGGGATGA-TAAATTC-TTGGCTAATT--ACGTTTCCA-TTGTTGGAGT 1056
Query 927 GACTACTAGAGG-TGATATTGTTTTGTGTATGAAAT-AT-ACATGT--A-A-A-CCGTTT 978
|| | || | || ||| |||||| ||| ||| | || ||| || | | | ||||||
Sbjct 1057 GAGTGCT-GCGGGTGAGATTGTTCTGTCAATGGC-TGATTACACGTCGAGACAACCGTTT 1114
Query 979 TATGTGTTCTACTTCAATCCCGAGAGGAACACTCTCCAGA-GCGTTGAAATCCAAG 1033
||| | ||||||||||||||||| |||||||| ||||| | | |||||||| ||||
Sbjct 1115 TATCTATTCTACTTCAATCCCGAAAGGAACACACTCCA-ATGTGTTGAAATTCAAG 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5