BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57600.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486209 jgi|Araly1|486209|fgenesh2_kg.5__2201__AT3G57600.1 1541 0.0
> Ahg486209 jgi|Araly1|486209|fgenesh2_kg.5__2201__AT3G57600.1
Length=1026
Score = 1541 bits (834), Expect = 0.0
Identities = 965/1028 (94%), Gaps = 10/1028 (1%)
Strand=Plus/Plus
Query 8 TATCCTCTTCTTCCTTCTTCACTATCAATCTTCTTCTCCACTACAACACAAATGGAGAAA 67
||||||||||||||||||||||| ||||||||||||| |||| ||| |||||||||||||
Sbjct 1 TATCCTCTTCTTCCTTCTTCACTCTCAATCTTCTTCTTCACTGCAAAACAAATGGAGAAA 60
Query 68 TCATCCTCAATGAAACAATGGAAGAAGGGTCCTGCTCGGGGTAAAGGCGGTCCACAAAAC 127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TCATCCTCAATGAAACAATGGAAGAAGGGTCCTGCTCGGGGTAAAGGCGGTCCACAGAAC 120
Query 128 GCTCTTTGTCAGTACCGTGGAGTCAGGCAAAGGACTTGGGGCAAATGGGTGGCTGAGATC 187
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 121 GCTCTTTGTCAGTACCGTGGAGTCAGGCAAAGGACGTGGGGCAAATGGGTAGCTGAGATC 180
Query 188 AGAGAGCCCAAGAAGAGGGCAAGACTTTGGCTTGGCTCTTTCGCTACAGCTGAAGAAGCA 247
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AGGGAGCCCAAGAAGAGGGCAAGACTTTGGCTTGGATCTTTCGCTACAGCTGAAGAAGCA 240
Query 248 GCTATGGCTTATGATGAGGCTGCCTTGAAACTCTATGGGCACGACGCATACCTCAACTTA 307
|| |||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct 241 GCCATGGCTTATGATGAAGCTGCCCTGAAACTCTATGGGCACGATGCATACCTCAACTTA 300
Query 308 CCTCATCTTCAGCGGAATACAAGACCTTCTCTGAGTAACTCTCAGAGGTTCAAATGGGTA 367
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 301 CCTCATCTTCAGCGGAATACGAGACCTTCTCTGACTAACTCTCAGAGGTTCAAATGGGTA 360
Query 368 CCTTCAAGGAAGTTTATATCTATGTTTCCTTCATGTGGTATGCTAAACGTGAATGCTCAG 427
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CCTTCAAGGAAGTTTATATCTATGTTTCCTTCTTGTGGTATGCTAAACGTGAATGCTCAG 420
Query 428 CCTAGTGTTCACATAATCCAGCAAAGACTAGAAGAACTCAAGAAAACTGGACTTTTATCT 487
|||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 421 CCTAGTGTTCACGTTATCCAGCAAAGACTAGAGGAACTTAAGAAAACTGGACTTTTATCT 480
Query 488 CAATCCTATTCTTCTAGTTCTTCCTCCACCGAATCAAAAACTAATACTAGCTTTCTTGAT 547
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 CAATCCTATTCTTCTAGTTCTTCCTCCACCGAATCAAAGACTAATACTAGCTTTCTTGAT 540
Query 548 GAGAAGACCAGCAAGGGAGAAACAGACAATATGTTCGAAGGTGGTGATCAGAAGAAACCA 607
|| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||
Sbjct 541 GAAAAGACCAGCAAGGGAGAAACAGATAATATGTTCGAAGTTGCTGATCAGAAGAAACCA 600
Query 608 GAGATCGACCTGACCGAGTTTCTTCAGCAACTAGGAATCTTGAAGGATGAAAATGAAGCA 667
||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 601 GAGATCGACCTAACCGAGTTTCTTCAGCAGCTAGGAATCTTGAAGGATGAAAATCAAGCA 660
Query 668 GAACCAAGTGAGGTAGCAGAGTGTCATTCCCCTCCACCATGGAACGAGCAAGAAGAAACT 727
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 GAACCAAGTGAGGTAGCAGAGTGTCATTCCCCTCCACCGTGGAACGAGCAAGAAGAAACT 720
Query 728 GGAAGTCCTTTCAGAACTGAGAATTTCAGCTGGGATACCCTGATCGAGATGCCAAGAAGT 787
||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||| |
Sbjct 721 GGAAGTCCTTTCAGAGCTCAGAATTTCAGCTGGGATACGCTGATCGAGATGCCAGGAACT 780
Query 788 GAAACCACAACTATGCAATTTGACTCCAGCAACTTCGGAAGCTATGATTTTGAGGATGAT 847
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 781 GAAACTACAACTATGCAATTCGACTCCAGCAATTTCGGAAGCTATGATTTTGAGGATAAT 840
Query 848 GTATCCTTCCCTTCCATCTGGGACTACTACGGAAGCTTAGATTGAGTAAAAGCAATTTAA 907
||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct 841 GTATCTTTCCCTTCCATCTGGGACTACTGCGGAAGCTTAGATTGAGTACAAGCAATTCAT 900
Query 908 GGTAGATCAAGATTCAGAAGTACACAAATGGTTTTGGATTTAGTGTAGCGTTTTGGAAAA 967
||||||||| |||||||||||||||||||||||| || |||||||||| ||| ||||| |
Sbjct 901 GGTAGATCA-GATTCAGAAGTACACAAATGGTTTGGG-TTTAGTGTAGTGTTCTGGAATA 958
Query 968 GAGACATAGGTAGT--GAGA----G--TGCAGTCTTTTATTATGCAGCAATAAAGTGAGT 1019
| || ||||||||| |||| | |||||||| |||||||||||||||||| ||||
Sbjct 959 GGGAAATAGGTAGTAAGAGACTAAGAGTGCAGTCTATTATTATGCAGCAATAAAACGAGT 1018
Query 1020 CAGTGTAC 1027
|| |||||
Sbjct 1019 CATTGTAC 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5