BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57610.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486210 jgi|Araly1|486210|fgenesh2_kg.5__2202__AT3G57610.1 2732 0.0
> Ahg486210 jgi|Araly1|486210|fgenesh2_kg.5__2202__AT3G57610.1
Length=1801
Score = 2732 bits (1479), Expect = 0.0
Identities = 1700/1803 (94%), Gaps = 29/1803 (2%)
Strand=Plus/Plus
Query 1 AGGTTTCCCCATACTCAAGTGCCGGCGAACCCTAAGACTTTTGATACctcttctc-t-tc 58
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 1 AGGTTTCCCCATACTCAAGTGCCGGCGAACCCTAAGAC-TTTGATACCTCTTCTCTTCTC 59
Query 59 tctctcttcgaagatgtctctctcttccctcactctcgactcCAATCCAAGATTCGCTGT 118
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 TCTCTCTTCAAAGATGTCTCTCTCTTCCCTCTCTCTCGACTCCAATCCAAGATTCGCTGC 119
Query 119 TGGTGGACCTTATCACCGCCGTTATCCTCCTCTTCACCACCCTCGAAGCTTCGTCTCTTG 178
|||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 120 TGGTGGTCCTTATCACCGCCGTTATCCTCCGCTTCGCCACCCTCGAAGCTTCGTCTCTTG 179
Query 179 CTCTGCTAAACGTCCAGCTGTCTCCGCTTCACTGAGCGTCGCCGCTGATTCAGCCGCCAC 238
|||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 180 CTCTGCTAAACGTCCAGCTGTCTCGGCTTCACTGAGCCTTGCCGCTGATTCAGCCGCCAC 239
Query 239 TGAGTCTCTTGGACGGATTGGATCACTGAGTCAAGTATCTGGTGTACTCGGTTGCCAATG 298
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 240 AGAGTCTCTCGGACGGATTGGATCACTGAGTCAAGTATCGGGTGTACTCGGTTGCCAGTG 299
Query 299 GGGAGATGAAGGTAAAGGCAAACTCGTTGACATCTTAGCCCAACACTTTGACATCGTTGC 358
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGGAGATGAGGGTAAAGGCAAACTCGTTGACATCTTAGCCCAACACTTTGACATCGTTGC 359
Query 359 TCGTTGTCAGGGTGGAGCTAATGCTGGACACACTATATACAATTCAGAGGGAAAGAAATT 418
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCGTTGTCAGGGTGGAGCAAATGCTGGACACACTATATACAATTCAGAGGGAAAGAAATT 419
Query 419 TGCACTTCACCTTGTGCCTTCAGGTATCCTGAATGAGGATACTACTTGTGTCATTGGAAA 478
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 TGCACTTCACCTTGTGCCTTCAGGTATCCTGAATGAGGATACTACTTGTGTGATTGGAAA 479
Query 479 CGGAGTTGTGGTGCATTTGCCAGGTCTCTTCAAAGAGATTGATGGTTTGGAGTCCAATGG 538
||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 480 CGGAGTTGTGGTGCATTTGCCTGGTCTCTTCAAAGAGATTGATGGTCTCGAGTCCAATGG 539
Query 539 TGTCTCCTGTAAAGGAAGGATTTTGGTCTCTGATCGCGCTCACTTGTTATTCGATTTCCA 598
||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 540 CGTCTCATGTAAAGGAAGGATCTTGGTCTCTGATCGCGCTCATTTGTTATTCGATTTTCA 599
Query 599 TCAAGAGGTTGATGGGCTCAGGGAATCTGAGCTTGCCAAGTCGTTCATTGGCACCACCAA 658
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 600 TCAAGAGGTTGATGGGCTCAGGGAATCTGAGCTTGCAAAATCGTTCATTGGCACCACGAA 659
Query 659 GAGGGGAATTGGTCCTGCCTACTCTAGTAAAGTGATAAGGAATGGTATTAGAGTAGGTGA 718
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 660 GAGGGGAATTGGTCCTGCCTATTCTAGTAAAGTGATAAGGAATGGTATTAGAGTGGGTGA 719
Query 719 TCTCAGGCACATGGATACTTTACCTCAAAAGCTTGACCTTTTACTATCAGATGCAGCGGC 778
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 720 TCTCAGGCACATGGATACTTTACCTCAGAAGCTTGACCTTTTACTATCAGATGCTGCGGC 779
Query 779 AAGGTTTCAAGGGTTCAAGTATACTCCTGAAATGCTTCGGGAAGAAGTTGAAGCATACAA 838
|||||||||||||||||| |||||||| || ||||||||||||||||| |||||||||||
Sbjct 780 AAGGTTTCAAGGGTTCAAATATACTCCAGACATGCTTCGGGAAGAAGTCGAAGCATACAA 839
Query 839 GAGATACGCTGACAGATTGGAGCCCTACATTACTGACACTGTCCATTTCATCAATGACTC 898
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 GAGATATGCTGACAGATTGGAGCCCTACATTACTGACACTGTCCATTTCATGAATGACTC 899
Query 899 GATTTCGCAGAAGAAAAAGGTTTTGGTCGAAGGTGGTCAAGCTACAATGTTGGACATTGA 958
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 900 GATTTCTCAGAAGAAAAAGATTTTGGTCGAAGGTGGCCAAGCTACAATGTTGGACATTGA 959
Query 959 CTTTGGGACTTATCCTTTTGTTACTTCCTCCAGCCCCTCAGCCGGTGGGATCTGCACAGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 CTTTGGGACTTATCCTTTTGTTACTTCCTCCAGCCCCTCAGCCGGTGGGATCTGCACGGG 1019
Query 1019 TCTTGGTATTGCACCAAGTGTTGTTGGTGATCTAATTGGAGTGGTAAAAGCATACACTAC 1078
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCTTGGTATTGCACCAAGAGTTGTTGGTGATCTAATTGGAGTGGTAAAAGCATACACTAC 1079
Query 1079 AAGAGTTGGTTCAGGTCCATTCCCGACAGAAAATTTGGGCACAGGTGGTGACCTTCTTAG 1138
||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 1080 AAGAGTTGGTTCAGGCCCATTCCCAACAGAAAATTTGGGCCCAGATGGTGACCTTCTTAG 1139
Query 1139 GTTAGCTGGACAGGAGTTTGGCACTACAACTGGTCGTCCTCGTCGGTGTGGCTGGCTTGA 1198
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1140 GTTGGCTGGACAGGAGTTTGGCACTACAACTGGGCGTCCTCGTCGGTGTGGTTGGCTTGA 1199
Query 1199 CATTGTTGCCCTGAAATTTTCTTGCCAAATCAATGGATTTGCATCACTTAATCTCACTAA 1258
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1200 CATTGTTGCACTGAAATTTTCTTGCCAAATCAATGGATTTGCATCACTGAATCTCACTAA 1259
Query 1259 GCTTGATGTACTTTCGGATCTGAACGAAATCCAGCTGGGTGTGGCTTACAAGAGGAGTGA 1318
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 GCTTGATGTACTTTCGGATCTGAACGAAATCCAGCTGGGTGTGGCTTATAAGAGGAGTGA 1319
Query 1319 CGGCACCCCTGTTAAATCATTCCCTGGTGATCTTCGTCTTCTCGAAGAACTGCATGTGGA 1378
||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1320 TGGCACTCCTGTTGAATCATTCCCTGGTGATCTTCGTCTTCTCGAAGAACTGCAAGTGGA 1379
Query 1379 GTATGAAGTCTTACCTGGG-TGGAAGTCTGACATATCCTCGGTCAGAAACTACTCTGATC 1437
||||||||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1380 GTATGAAGTCTTACC-GGGATGGAAGTCTGACATTTCCTCGGTCAGAAATTACTCTGATC 1438
Query 1438 TTCCAAAGGCTGCTCAGCAATATGTTGAGAGGATTGAAGAACTCGTGGGTGTGCCCATTC 1497
||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1439 TTCCAAAGGCTGCACAGCAGTATGTGGAGAGGATTGAAGAACTTGTGGGTGTGCCCATTC 1498
Query 1498 ATTACATTGGTATTGGGCCCGGTCGTGATGCCCTTATATATAAATGATTTTTAGTGTTAG 1557
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1499 ATTACATTGGTATTGGGCCCGGTCGTGATGCCCTTATATACAAATGATTTTTAGTGTTAG 1558
Query 1558 G---------CTTTTTTG---G-T-TCCTCCACAAACTCAAAAATTGATCAAGTGTCAAG 1603
||||||| | | |||||||||| ||||||||||||||||||||||||
Sbjct 1559 TTTTTTTTTTCTTTTTTTTTTGCTCTCCTCCACAAGCTCAAAAATTGATCAAGTGTCAAG 1618
Query 1604 TTACTGAGAATTATTACTCTCTTTGGAATGACTAGTGTATCTGTTGCATTGTTTCTAATA 1663
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1619 TTACTGAGAATTGTTACTCTCTTTGGAATGACTAGTGTATCTGTTGCATTGTTTCTTATA 1678
Query 1664 TTGGAATGAAGAGGAATTCTGTGCTTAAGCAGTGAGGTTGCTATATTCATAATGTTTAAG 1723
||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||| |
Sbjct 1679 TTGGAATGAAGAGGAATTCTGTGCTTAGGCAGTGAGGTTGTTATGTTCATAAAGTTTAGG 1738
Query 1724 CTTTCGTGTTTGATCTT-ACTCTATTC---G--TTC---C-ATTGATAAGAGATCCTTTT 1773
||||||||||||||||| ||||||||| | ||| | ||||||||||||||||| |
Sbjct 1739 CTTTCGTGTTTGATCTTTACTCTATTCCTTGAATTCTTTCCATTGATAAGAGATCCTTGT 1798
Query 1774 ATG 1776
|||
Sbjct 1799 ATG 1801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5