BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57640.1
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486214 jgi|Araly1|486214|fgenesh2_kg.5__2206__AT3G57640.1 558 3e-158
> Ahg486214 jgi|Araly1|486214|fgenesh2_kg.5__2206__AT3G57640.1
Length=967
Score = 558 bits (302), Expect = 3e-158
Identities = 333/348 (96%), Gaps = 2/348 (1%)
Strand=Plus/Plus
Query 444 ATTGGTTGGATGTTGTCTTGAATCTGAACATCCAGTTTTGGTTTATCGTGCATCAAAGAA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 281 ATTGGTTGGATGTTGTCTTGAATCTGAACATCCAGTTTTGGTTTATCGTGCATTAAAGAA 340
Query 504 ACCTACTAGTTTAGATCTGAAAATGGTTGTGTCATGGAGACAAAGATTGAAAATAGCAGA 563
|||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 341 ACCTTCTAGTTTAGATCTGAAAACGGTTGTGTCATGGAGACAAAGATTGAAGATAGCAGA 400
Query 564 GGAGATTGCAACTGCTTTAGCTTATCTTCACACTGCGTTTCCAAGACCTTTCGTATATAG 623
||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 401 GGAGATTGCTACTGCTTTAGCTTATCTTCACACTGCCTTCCCAAGGCCTTTCGTATATAG 460
Query 624 GATTCTGCGTTTAGAAGATATCTTATTGGATGATGAAGATGGTGTTGCTAAGTTGTGTAA 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GATTCTGCGTTTAGAAGATATCTTATTGGATGATGAAGATGGTGTTGCTAAGTTGTGTAA 520
Query 684 CTTCTC-CTACTGTGTCTCTATTCCACAAGGAGAAACATTTGTGAAGCTTGGTAATGGTT 742
|||||| | |||||| ||| |||||||||||||||||||||||||| ||||||| |||||
Sbjct 521 CTTCTCTC-ACTGTGCCTCGATTCCACAAGGAGAAACATTTGTGAAACTTGGTAGTGGTT 579
Query 743 GTATAGGTGGAGATTATGATTACATGGATGATAATTATTTGATTAATG 790
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 580 GTATAGGTGGAGATTATGATTACATGGATGATAATTATTTGATCAATG 627
Score = 377 bits (204), Expect = 9e-104
Identities = 239/256 (93%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 904 TTTGAAAACAGAAGAAAGTTTGCAAAATGCATTGATGAGATTGTCGATTCAAACATGT-T 962
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| || | |
Sbjct 645 TTTGAAAACAGAAGAAAGTTTGCAAAATCCATTGATGAGATTGTTGATTCAAAGAT-TCT 703
Query 963 AGAGAAAATAGGTGATGTTACAGAAGAAGAGCGTTGTCGAATGGAAGCTTTCATTGTCCT 1022
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 704 AGAGAAAATAGGTGAAGTTACAGAAGAAGAGCGTTGTCGAATGGAAGCTTTCATTGTTCT 763
Query 1023 CTCGGAAAGATGCATTGGTCTTAGAGGGGAAGTTCCAAAAATGGTTGAAGTTGCCAAAGA 1082
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 764 CTTAGAAAGATGCATTGGTCTTAGAGGGGAAGTTCCAAAAATGGTGGAAGTTGCCAAAGA 823
Query 1083 ACTAAAAAGATTCCTTAGAGATTCTTCTTCTTCTTGTGGTGAAACAAGTTTATAGATTAC 1142
|||||||||||| |||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 824 ACTAAAAAGATTTCTTAGAGATTCTTCTTCTTCTTCCGATGAAACAAGTTTGTAGATTAT 883
Query 1143 ATATCACATACTTGTT 1158
| ||||||||||||||
Sbjct 884 AAATCACATACTTGTT 899
Score = 335 bits (181), Expect = 5e-91
Identities = 203/213 (95%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 155 AAGAGATCATCAAATCTTGCAATGGCAAAGCAAATCCCATCAAAATATTCTCCGCTGATC 214
|||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||
Sbjct 72 AAGAGATCATCAAATCTTGCAATGGCGAAGCAAATCCCATCAAATTCTTCTCCGCTGATC 131
Query 215 AAATCCTAGAAGCCACCGACACTTTCAGCGAATCCAATCGTGTTTCTGAACTATTCGATG 274
||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 132 AAATCCTCGAAGCCACAGACACTTTCAGCGAATCCAATCTTGTTTCTGAACTATTCGATG 191
Query 275 AGATTCCATACGATTGGTATTATTCAGGTAAAAACAATAACCATCATCATCATCATAAAC 334
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 192 AGATTCCATACGATTGGTATTATTCAGGTAAAAACAATAACCATCATCATCAT-A-ACA- 248
Query 335 TGTTACTCATCAAGAAATGGAGATATAGATTTA 367
|||||||||||||||||||||||||||||||||
Sbjct 249 TGTTACTCATCAAGAAATGGAGATATAGATTTA 281
Score = 80.5 bits (43), Expect = 3e-14
Identities = 50/53 (94%), Gaps = 1/53 (2%)
Strand=Plus/Plus
Query 49 ttttCGTTGTTGTTTGAGATGGAGTGGTGGAAGAAGAAGAGTTTACGAGCCAT 101
|||| |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 TTTT-GTTGTTGTTTGAGATGAATTGGTGGAAGAAGAAGAGTTTACGAGCCAT 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47005556661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5