BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57650.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938748 jgi|Araly1|938748|scaffold_502939.1 1958 0.0
> Ahg938748 jgi|Araly1|938748|scaffold_502939.1
Length=1216
Score = 1958 bits (1060), Expect = 0.0
Identities = 1151/1195 (96%), Gaps = 6/1195 (1%)
Strand=Plus/Plus
Query 245 ATGGTGATTGCTGCAGCTGTCATCGTGCCTTTGGGCCTTCTCTTCTTCATATCTGGTCTC 304
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 21 ATGGTGCTTGCTGCAGCTGTCATCGTGCCTTTGGGCATTCTCTTCTTCATATCTGGTCTC 80
Query 305 GCTGTCAATCTCTTTCAGGCAGTTTGCTATGTACTCATTCGACCACTGTCTAAGAACACA 364
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 81 GTTGTCAATCTCTTTCAGGCAGTTTGCTATGTACTCATTCGGCCACTGTCTAAGAACACA 140
Query 365 TACAGAAAAATTAACCGGGTGGTTGCAGAAACCTTGTGGTTGGAGCTTGTATGGATAGTT 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TACAGAAAAATTAACCGGGTGGTTGCAGAAACCTTGTGGTTGGAGCTTGTATGGATAGTT 200
Query 425 GACTGGTGGGCTGGAGTTAAGATCCAAGTGTTTGCTGATAATGAGACCTTCAATCGAATG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GACTGGTGGGCTGGAGTTAAGATCCAAGTGTTTGCTGATAATGAGACCTTCAATCGAATG 260
Query 485 GGCAAAGAACATGCTCTTGTCGTTTGTAATCACCGAAGTGATATTGATTGGCTTGTGGGA 544
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 261 GGCAAAGAACACGCTCTTGTCGTATGTAATCACCGAAGTGATATTGATTGGCTTGTGGGA 320
Query 545 TGGATTCTGGCTCAGCGGTCAGGTTGCCTGGGAAGCGCATTAGCTGTAATGAAGAAGTCT 604
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TGGGTTCTGGCTCAGCGGTCAGGTTGCCTGGGAAGCGCATTAGCTGTAATGAAGAAGTCT 380
Query 605 TCCAAATTCCTTCCAGTCATAGGCTGGTCAATGTGGTTCTCGGAGTATCTCTTTCTGGAA 664
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 381 TCCAAATTCCTTCCAGTCATAGGCTGGTCAATGTGGTTCTCGGAGTATCTGTTTCTGGAA 440
Query 665 AGAAATTGGGCCAAGGATGAAAGCACTCTAAAGTCAGGTCTTCAGCGCTTGAGCGACTTC 724
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 441 AGGAATTGGGCCAAGGATGAAAGCACTCTAAAGTCAGGTCTTCAGCGCTTGAGTGACTTC 500
Query 725 CCTCGACCTTTCTGGTTAGCCCTTTTTGTGGAGGGAACTCGCTTTACAGAAGCCAAACTT 784
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 501 CCTCGACCTTTCTGGTTAGCCCTTTTTGTGGAGGGAACTCGATTTACAGAGGCTAAACTT 560
Query 785 AAAGCCGCACAAGAGTATGCAGCCTCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATT 844
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 561 AAAGCCGCACAAGAGTATGCAGCATCCTCTGAATTGCCTATCCCTCGAAATGTGTTGATT 620
Query 845 CCTCGCACCAAAGGTTTCGTGTCAGCTGTTAGTAATATGCGTTCATTTGTCCCAGCAATT 904
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||
Sbjct 621 CCTCGCACCAAAGGTTTTGTGTCAGCTGTTAGTAATATGCGCTCGTTTGTCCCAGCCATT 680
Query 905 TATGATATGACAGTGACTATTCCAAAAACCTCTCCACCACCCACGATGCTAAGACTATTC 964
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 681 TATGATATGACAGTGACTATTCCAAAAACTTCTCCACCACCCACGATGCTAAGACTATTC 740
Query 965 AAAGGACAACCTTCAGTGGTGCATGTTCACATCAAGTGTCACTCGATGAAAGACTTACCT 1024
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 741 AAAGGACAACCTTCTGTGGTGCATGTTCACATCAAGTGTCACTCAATGAAAGACTTGCCT 800
Query 1025 GAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGGATGCTCTG 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 GAATCAGATGACGCAATTGCACAGTGGTGCAGAGATCAGTTTGTGGCTAAGGATGCTCTG 860
Query 1085 TTAGACAAACACATAGCTGCAGACACTTTCCCCGGTCAACAAGAACAGAACATTGGCCGT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 TTAGACAAACACATAGCTGCAGACACTTTCCCCGGTCAACAAGAACAGAACATTGGCCGT 920
Query 1145 CCCATAAAGTCCCTTGCGGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATA 1204
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 CCCATAAAGTCCCTTGCAGTGGTTCTATCATGGGCATGCGTACTAACTCTTGGAGCAATA 980
Query 1205 AAGTTCCTACACTGGGCACAACTCTTTTCTTCATGGAAAGGTATCACGATATCGGCGCTT 1264
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 981 AAGTTCCTACACTGGGCACAACTCTTTTCCTCATGGAAAGGTATCACGCTATCGGCGGTC 1040
Query 1265 GGTCTAGGTATCATCACTCTCTGTATGCAGATCCTGATACGCTCGTCTCAGTCAGAGCGT 1324
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GGTCTAGGTATCATCACTCTATGTATGCAGATCCTGATACGCTCGTCTCAGTCAGAGCGT 1100
Query 1325 TCGACCCCAGCCAAAGTCGTCCCAGCCAAGCCAAAAGACAATCACCAC-C----C-AGAA 1378
||||||||||| ||||| || |||||||||||||||||| |||||||| | | ||||
Sbjct 1101 TCGACCCCAGCTAAAGTTGTTCCAGCCAAGCCAAAAGACCATCACCACTCAGAACCAGAA 1160
Query 1379 TCATCCTCCCAAACAGAAACGGAGAAGGAGAAGTAAAAACTGGTTCTCACAGATC 1433
|||||||||||||||||| ||||||| || |||| || ||||||||||||||||
Sbjct 1161 CCATCCTCCCAAACAGAAATGGAGAAGCAGGAGTAGAAGCTGGTTCTCACAGATC 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5