BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57670.1
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486217 jgi|Araly1|486217|fgenesh2_kg.5__2209__AT3G57670.1 2337 0.0
Ahg334119 jgi|Araly1|334119|fgenesh1_pg.C_scaffold_1000684 200 2e-50
> Ahg486217 jgi|Araly1|486217|fgenesh2_kg.5__2209__AT3G57670.1
Length=1503
Score = 2337 bits (1265), Expect = 0.0
Identities = 1429/1507 (95%), Gaps = 16/1507 (1%)
Strand=Plus/Plus
Query 16 tctctctctctctTCACCATGACTGATCCTTATTCCAATTTCTTCACAGACTGGTTCAAG 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTTCACCATGACTGATCCTTATTCCAATTTCTTCACAGACTGGTTCAAG 60
Query 76 TCTAATCCTTTTCACCATTAccctaattcctccactaacccctctcctcatcctcttcct 135
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TCTAATCCTTTTCACCATTACCCTAATTCCTCCACTAACCCCTCTCCTCACCCTCTTCCT 120
Query 136 c--c-tgttactcctccctcttccttcttcttcttccctcAATCCGGAGACCTCCGCCGT 192
| | | || |||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 121 CTTCCTCTTCCTCCTCCCTCTTCCTTTTTCTTCTTCCCTCAATCCGGCGATCTCCGCCGT 180
Query 193 CCACCGCCGCCACCAActcctcctccttctcctcctctccgagaagccctccctctcctc 252
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 CCACCGCCGCCACCAACTCCTCCTCCTTCTCCTCCTCTCCGCGAAGCCCTCCCTCTCCTC 240
Query 253 agcctcAGCCCCGCCAACAAACAACAAGACCACCATCACAACCATGACCACCTTATTCAA 312
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 AGCCTCAGCCCCGCCAACAAACAACAAGACCACCATCACAACCATGACCATCTAATTCAA 300
Query 313 GAACCACCTTCAACCTCCATGGATGTCGACTACGATCATCACCATCAAGATGATCATCAT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAACCACCTTCAACCTCCATGGATGTCGACTACGATCATCACCATCAAGATGATCATCAT 360
Query 373 AACCTCGATGACGATGACCATGACGTCACCGTTGCTCTTCACATAGGCCTTCCAAGCCCT 432
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACCTCGAGGAAGATGACCATGACGTCACCGTTGCTCTTCACATAGGCCTTCCAAGCCCT 420
Query 433 AGTGCTCAAGAGATGGCCTCTTTGCTCATGATGTCTTCTTCTTCCTCTTCCTCGAGGACC 492
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGTGCTCACGAGATGGCCTCTTTGCTCATGATGTCTTCTTCTTCCTCTTCCTCGAGGACC 480
Query 493 ACTCATCATCACGAGGACATGAATCACAAGAAAGACCTCGACCATGAGTACAGCCACGGA 552
||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 481 ACTCATCATCATGAGGATATGAATCACAAGAAAGATCTCGACCATGATTACAGTCACGGC 540
Query 553 GCTGTCGGAGGAGGAGAAGATGACGATGAAGATTCAGTCGGCGGAGACGGCGGCTGTAGA 612
|||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 541 GCTGCCGGAGGAGGAGAAGACGACGATGAAGATTCAGTCGGTGGAGACGGCGGCTGTAGA 600
Query 613 ATCAGCAGACTCAACAAGGGTCAATATTGGATCCCTACACCTTCTCAGATTCTCATTGGC 672
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCAGCAGACTGAACAAGGGCCAATATTGGATCCCTACACCTTCTCAGATTCTCATTGGC 660
Query 673 CCTACTCAGTTCTCATGTCCTGTTTGCTTCAAAACCTTCAACAGATACAATAACATGCAG 732
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 CCTACTCAGTTCTCATGTCCTGTTTGCTTCAAAACCTTCAACAGATACAACAACATGCAG 720
Query 733 ATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCTGAATCTCTAAGGGGAACA 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCTGAATCTCTAAGGGGAACA 780
Query 793 CAACCAACAGGAATGCTAAGGCTTCCGTGCTATTGCTGCGCCCCAGGCTGTCGCAACAAC 852
|| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 781 CAGCCAACAGGAATGCTAAGGCTTCCGTGCTACTGCTGCGCACCAGGCTGCCGCAACAAC 840
Query 853 ATTGACCATCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACCCTTCAAACACATTACAAG 912
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 ATTGACCATCCAAGGGCAAAGCCTCTCAAAGACTTCAGAACACTTCAAACACATTACAAA 900
Query 913 AGAAAACATGGGATCAAACCTTTCATGTGTAGGAAATGTGGAAAGGCTTTCGCAGTCCGA 972
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGGAAACATGGGATCAAACCTTTCATGTGTAGGAAATGTGGAAAGGCTTTCGCAGTCCGA 960
Query 973 GGGGACTGGAGAACACATGAGAAGAATTGTGGCAAACTTTGGTATTGCATATGTGGATCT 1032
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 961 GGGGATTGGAGAACACATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGATCT 1020
Query 1033 GATTTCAAGCACAAGAGATCTCTCAAAGATCACATCAAGGCTTTTGGGAATGGTCATGGA 1092
||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1021 GATTTTAAGCACAAAAGATCTCTCAAAGATCATATCAAGGCTTTTGGAAATGGCCATGGA 1080
Query 1093 GCCTACGGAATTGATGGGTTTGATGAAGAAGATGAGCCTGCCTCTGAGGTAGAACAATTA 1152
|| || || ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1081 GCGTATGGCATTGATGGGTTTGATGAAGAAGATGAGCCTGCCTCAGAGGTAGAACAGTTA 1140
Query 1153 GACAATGATCATGAGTCAATGCAGTCTAAATAGCttatatatattactataa---gtact 1209
|||||||||||||||||||||||||| |||||||||||||| |||| | ||| |||||
Sbjct 1141 GACAATGATCATGAGTCAATGCAGTCCAAATAGCTTATATAAATTAGTGTAATTAGTACT 1200
Query 1210 aagtaattcggtatatatattaattataaGAAACCTAAATCTATGGACCAAGTTTTGATG 1269
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1201 AAGTAATTCGGTATATATATTAATTATAAGTA-CCTAAATCTATGGACCAAGTTTTGATG 1259
Query 1270 GAGGTAGGGCTTTTCAAACTAAAAGCTATATCATCTAATTGATCATAGGaaaaaaaTGAA 1329
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1260 GAGGTAGGGCTTTTCAAAGTAAAAGCTATATCATCTAATTGATCATAG-AACAAAATGAA 1318
Query 1330 TCAAGAGCACTTGGAAAATTTTAAATT-GTATCTTTAGCTTCCTAGTTAAATTTATTGCA 1388
|||||| |||||||||| |||||| || |||||||||||| || ||||||||||||||
Sbjct 1319 TCAAGATCACTTGGAAATTTTTAATTTTGTATCTTTAGCTAGCT--TTAAATTTATTGCA 1376
Query 1389 AGACAATGTAGCAGTCTAACCAATGAGGTTCCCAACGGTTTATTTCTATTTGTATAT-TA 1447
||||||||||||| |||||| ||||||||| |||||||||| ||| ||||||||||| ||
Sbjct 1377 AGACAATGTAGCACTCTAACTAATGAGGTTTCCAACGGTTTCTTTATATTTGTATATATA 1436
Query 1448 TT-TT---GTCATTAGCTTCACCTTTCGTTAATTCGAAGGACATAACTTATAAATGTTTA 1503
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 TTATTTTTGTCATTAGTTTCACCTTTCGTTAATTCGAAGGACATAACTTATAAATGTTTA 1496
Query 1504 AATTATG 1510
|||||||
Sbjct 1497 AATTATG 1503
> Ahg334119 jgi|Araly1|334119|fgenesh1_pg.C_scaffold_1000684
Length=993
Score = 200 bits (108), Expect = 2e-50
Identities = 315/411 (77%), Gaps = 29/411 (7%)
Strand=Plus/Plus
Query 695 TTTGCTTCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGAT 754
||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 530 TTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGAT 589
Query 755 CACAATACAGAAAAGGACCTGAATCTCT--AAGGGGA-A-CACAACCAACAGGAATGCTA 810
| | | ||||||||| |||| || || ||||| | | ||||||| ||| || ||
Sbjct 590 CTGAGTTCAGAAAAGGGGCTGACTC-CTTGAAGGGCACAACACAACCTGCAGCCATCCTG 648
Query 811 AGGCTTCCGTGCTATTGCTGCGCCCCAGGC-TGTC--GCAACAACATTGACCATCCAAGG 867
|||| || |||||||| || || ||| || | | |||||||| ||||||| ||
Sbjct 649 CGGCTGCCATGCTATTGTTGTGCGG-AGGGATG-CAAG-AACAACATCAACCATCCGCGG 705
Query 868 GCAAAGCCTCTCAAAG-ACTTCAGAACCCTTCAAACACATTACAAGA-GAAAACATGGGA 925
| ||||| || ||| | ||| | || ||||| ||||||||||| | | || |||||
Sbjct 706 TCCAAGCC-CTTGAAGGATTTCCGTACACTTCAGACACATTACAA-ACGTAAGCATGGC- 762
Query 926 TCAAA-CC-TTT-CATGTGTAGG-AAATGTGG-AAAGGCTTTCGCAGTCCGAGGGGACTG 980
|| || || ||| | | || || |||||||| |||| | || || || ||| |||||
Sbjct 763 TCCAAGCCCTTTTC-T-TGC-GGCAAATGTGGCAAAG-CGTTGGCTGTGAAAGGTGACTG 818
Query 981 GAGAACACATGAGAAGAATTGTGGCAAA-CTTTGGTATTGCATATGTGGATCTGATTTCA 1039
||| || |||||||| || || || ||| ||||||||||| | ||||||||| |||||||
Sbjct 819 GAGGACCCATGAGAAAAACTGCGG-AAAGCTTTGGTATTGTACATGTGGATCAGATTTCA 877
Query 1040 AGCACAAGAGATCTCTCAAAGATCACATCAAGG-CTTTTGGGAATGGTCAT 1089
|||||||||| |||||||| || ||||||| || | ||||| | ||| |||
Sbjct 878 AGCACAAGAGGTCTCTCAAGGACCACATCA-GGTCCTTTGGCAGTGGACAT 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525923580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5