BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57680.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324269 jgi|Araly1|324269|fgenesh1_pm.C_scaffold_5001813 2361 0.0
> Ahg324269 jgi|Araly1|324269|fgenesh1_pm.C_scaffold_5001813
Length=1554
Score = 2361 bits (1278), Expect = 0.0
Identities = 1472/1565 (94%), Gaps = 16/1565 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAAAGTTGTAACCCTAAATCATGATCTACCTCTGTTACACTTCCCGAATTCTCGG 60
||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAAAAAATTGTAACCCTAAATCATGACCTACCTCTGTTACACTTGCCGAATTCTCGG 60
Query 61 AAACCCTTTTCGATTCCATCTCCGATTCTTCGGA-TTTCGAGCTTCAAGCGTCATAAGAA 119
||||||||||||||||||||||||||||||| || |||| |||||||| | || ||||||
Sbjct 61 AAACCCTTTTCGATTCCATCTCCGATTCTTC-GATTTTCAAGCTTCAATCTTCGTAAGAA 119
Query 120 ACGTTC-TTGTCTTGCATCGTCTT-CGCGTCTAGGGTTCTATACAGAGACCAAGACCGTT 177
||| || ||||||||||||||||| || | || | | || |||| ||| |||
Sbjct 120 ACG-TCTTTGTCTTGCATCGTCTTCCGAAAC-AGAG----A-CCA-AGACTGTGACTGTT 171
Query 178 TCAGAGAGCCATGGTGTGATAGTTGACAACAGTACCATCGGAAGAAGATTGCTTGGTTTA 237
|| ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 172 TCGGAGAGCCATGGTGTGATAGTTGACAACAGTACCGTTGGAAGAAGTTTGCTTGGTTTA 231
Query 238 GCCGCAGCCGTTTCAGTAGCGGTTTCTTTGTCGATCTTTTGTGATTCCCCGGCACTAGCT 297
||||| |||||| ||||||| ||||||| |||||||||||| ||||| |||||||||||
Sbjct 232 GCCGCCGCCGTTGCAGTAGCTGTTTCTTCGTCGATCTTTTGCGATTCTTCGGCACTAGCT 291
Query 298 GAGTCTCTAACGATCGCTTTCCCTGTTTCACGTGCTCGTGAGGTTACTACAGTACAGAGA 357
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GAGTCTCTGACGATCGCTTTCCCTGTTTCACGTGCTCGTGAGGTTACTACAGTACAGAGA 351
Query 358 ACTCTTGTGGAAGCTTGGGGTTTGATTAGAGAAACATTTGTTGATCCAACTTTTAATCAT 417
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 352 ACTCTTGTGGAAGCTTGGGGTTTAATTAGTGAAACATTCGTTGATCCAACTTTTAATCAT 411
Query 418 CAAGATTGGGATTTTAAGTTGCAACAGACGATGGTGGAAATGTTTCCTCTAAGATCAGCA 477
|| |||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 412 CAGGATTGGGATTTTAAGTTGCAGCAGACAATGGTGGAAATGCTTCCTCTAAGATCAGCA 471
Query 478 GATGCTGCTTATGGAAAGCTCAAAGCTATGCTCTCTACGCTTGGTGATCCCTTTACTCGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GATGCTGCTTATGGAAAGCTCAAAGCTATGCTCTCTACGCTTGGTGATCCCTTTACTCGA 531
Query 538 CTCATTACCCCAAAGGAGTACCAAAGTTTCAGAATTGGCAGCGATGGAAATCTCCAAGGT 597
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CTCATTAGCCCTAAGGAGTACCAAAGTTTCAGAATTGGCAGCGATGGAAATCTCCAAGGT 591
Query 598 GTTGGCCTTTTCATAAACTCAGAACCAAGAACAGGTCACCTGGTTGTTATGTCTTGCGTA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 592 GTTGGCCTTTTCATAAACTCAGAACCAAGAACAGGTCACCTGGTTGTTATGTCTTGCATA 651
Query 658 GAAGGTAGCCCGGCAGATCGTGCTGGTATACATGAAGGCGAGGAGTTAGTCGAGATAAAT 717
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 652 GAAGGTAGCCCGGCAGCTCGTGCTGGTATACATGAAGGCGAGGAATTAGTCGAGATAAAT 711
Query 718 GGTGAGAAATTAGATGATGTTGATAGTGAAGCAGCAGCACAGAAGCTGAGAGGCCGAGTT 777
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GGTGAGAAATTGGATGGTGTTGATAGTGAAGCAGCAGCACAGAAGCTGAGAGGCCGAGTT 771
Query 778 GGAACATTTGTTACCATAAAACTTAAAAATGTGAATGGATCAGGGACAGATTCTGGTATT 837
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 772 GGAACATTTGTTACCATAAAACTTAAAAGTGTGAATGGATCAAGGACAGATTCTGGTATC 831
Query 838 AGAGAGGTCAAGTTACCTCGAGATTACATTAAGCTATCTCCAATATCCAGTGCTATAATC 897
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 832 AGAGAGGTCAAGTTACCTCGAGATTACATTAAGTTATCTCCAATATCCAGTGCTATAATC 891
Query 898 CCACATACAACACCTGATGGACGTTTAGCGAAGACAGGTTATGTCAAACTCACAGCGTTT 957
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 892 CCACATACAACACCTGATGGACGTTTAGCAAAGACGGGTTATGTCAAACTCACAGCTTTT 951
Query 958 TCACAGACTGCAGCGTCCGATATGGAAAATGCGGTGCACGAGATGGAGAATCAGGATGTT 1017
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 952 TCTCAGACTGCAGCGTCCGATATGGAAAATGCGGTACACGAGATGGAGAATCAGGATGTT 1011
Query 1018 CAGTCATACATTCTAGACCTAAGGAACAATCCGGGAGGTCTGGTTAGAGCTGGTCTTGAT 1077
|||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1012 CAGTCATATATTCTAGATCTAAGGAACAATCCGGGAGGTCTGGTTAAAGCTGGCCTTGAT 1071
Query 1078 GTTGCACAATTATGGCTTGACGGAGATGAGACTCTTGTGTATACAATCGATCGAGAAGGG 1137
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GTTGCACAACTATGGCTTGACGGAGATGAGACTCTTGTGTATACAATCGATCGAGAAGGG 1131
Query 1138 GTTACATCACCGATCAACATGATCAATGGACACGCTGTGACACATGATCCACTTGTTGTG 1197
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1132 GTTACATCACCGATAAACATGATTAATGGACACGCTGTGACACACGATCCACTTGTTGTG 1191
Query 1198 CTTGTGAATGAAGGAAGTGCTAGTGCAAGTGAAATTTTGGCAGGTGCTTTACACGATAAT 1257
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1192 CTTGTGAATGAAGGAAGTGCGAGTGCAAGTGAAATTTTGGCAGGTGCTTTACATGATAAT 1251
Query 1258 GGTCGAGCTATACTTGTCGGTAACCGGACATTTGGGAAAGGGAAAATTCAAAGCATAACA 1317
||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1252 GGTCGGGCTATACTTGTCGGTAACCGGACATTTGGGAAAGGGAAAATCCAGAGTGTAACG 1311
Query 1318 GAGCTAAACGATGGGTCGGCTTTGTTTGTGACGGTGGCTAAGTATTTGTCTCCGTCTTTA 1377
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1312 GAACTAAACGATGGGTCGGCTTTGTTTGTGACGGTGGCTAAGTATTTGTCTCCGTCTCTA 1371
Query 1378 CACGAAATTGATCAAGTAGGGATTGCACCTGATGTACAGTGTACCACAGG-TATGATCGA 1436
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1372 CACGAAATTGATCAAGTAGGGATTGCACCTGATGTACAGTGTACCAC-GGATATGATCGA 1430
Query 1437 TTCTTTGACCGCTGAGATAGTTGAGAAGATGAACAGTTCGGTTCCATTGCTTGA-AGCAG 1495
||||||||||| ||||| | || ||||||||||||||||||||||||||||||| | |||
Sbjct 1431 TTCTTTGACCGGTGAGACACTTAAGAAGATGAACAGTTCGGTTCCATTGCTTGATA-CAG 1489
Query 1496 ACTCATGTGTTATGGTCGCTGAGCACGAACTTGAGGCTCGACGATCTAATGGAACAGCTT 1555
||||||||||| ||||||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 1490 ACTCATGTGTTGTGGTCGCTGAGCACGAACTTGAGACTCTACGATCCAATGGAACAGCTT 1549
Query 1556 CTTGA 1560
|||||
Sbjct 1550 CTTGA 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5