BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G57690.1

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg486219 jgi|Araly1|486219|fgenesh2_kg.5__2211__AT3G57690.1         573    3e-163
  Ahg483274 jgi|Araly1|483274|fgenesh2_kg.4__2334__AT2G41905.1         224    3e-58 


> Ahg486219 jgi|Araly1|486219|fgenesh2_kg.5__2211__AT3G57690.1
Length=362

 Score =  573 bits (310),  Expect = 3e-163
 Identities = 347/364 (95%), Gaps = 5/364 (1%)
 Strand=Plus/Plus

Query  9    aaaaagcacaaaaactaaataaaaagaagaaaagaaaagCCTTTCAGGTCTCAAACAATG  68
            ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1    AAAAAACACAAAAACTAAATAAAAAGAAGAAAAGAAAAGCCTTTCAGGTCTC-AACAATG  59

Query  69   GAGATGAAGAAGATTGCTTGCGGTGTGCTTTTCGCTGCTGCCTCCATGACCGCCGTCATG  128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GAGATGAAGAAGATTGCTTGCGGTGTGCTTTTCGCTGCTGCCTCCATGACCGCCGTCATG  119

Query  129  GCTGCTGAGGAAGTCGGAGCTCCGGCACCAGGACC---TGCATCCGCCGCCTCGGCTGCG  185
            |||||||| ||||||||||||||||||||||||||   ||||||||||||||||| ||||
Sbjct  120  GCTGCTGACGAAGTCGGAGCTCCGGCACCAGGACCCGCTGCATCCGCCGCCTCGGTTGCG  179

Query  186  TTGCCAGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTCTCCCTCTTCAGCTACTACTTG  245
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  180  TTGCCAGCCCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCCCTCTTCAGCTACTACTTG  239

Query  246  CACTAAGCTATCTTTCATTATGTAATAACAACTCATTATGTGATCTTATTCATTTCCTAT  305
            |||||||||||||||||||||||| ||| || | |||||||||||||||||||||||| |
Sbjct  240  CACTAAGCTATCTTTCATTATGTATTAAAAATTAATTATGTGATCTTATTCATTTCCTCT  299

Query  306  TTATTTCCATTTCACTTGTTTATTAATAAAACAGAGAAAGTAATTCAAGAATAAATTTTC  365
             ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  300  CTATTTCCATTTCA-TTGTTTATTAATAAAACAGAGAAAGTATTTCAAGAATAAATTTTC  358

Query  366  TCTT  369
            ||||
Sbjct  359  TCTT  362


> Ahg483274 jgi|Araly1|483274|fgenesh2_kg.4__2334__AT2G41905.1
Length=427

 Score =  224 bits (121),  Expect = 3e-58
 Identities = 217/259 (84%), Gaps = 23/259 (9%)
 Strand=Plus/Plus

Query  16   acaaaa--actaaataaaaaga-agaaaagaaaagCCTTTCAGGTCTCAA--A-CAATGG  69
            ||||||  || ||| ||||| | |||||| |||| |||||||||||||||  | ||||||
Sbjct  18   ACAAAACTACCAAAAAAAAAAACAGAAAA-AAAA-CCTTTCAGGTCTCAACTAGCAATGG  75

Query  70   AGATGAAGAAGATTGCTTGCGGTGTGC-TTTTCGCTGCTGCCTCCATGACCGCCGTCATG  128
            |||||||||||||||| ||||| || | ||||||||||||| ||||||||||||||||||
Sbjct  76   AGATGAAGAAGATTGCCTGCGGAGT-CGTTTTCGCTGCTGCTTCCATGACCGCCGTCATG  134

Query  129  GCTGCTGAGGAAGTCGGAGCTCCGGCACCAGGACCTGCATCC-GC--CGCCTCGGCT-G-  183
            |||||  | || ||||||||||||||||||||||| ||  || ||   |||||   | | 
Sbjct  135  GCTGC--A-GAGGTCGGAGCTCCGGCACCAGGACCCGCCGCCAGCGGAGCCTC-TATAGC  190

Query  184  CGTTGCCAGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTCTCCCTCTTCAGC-TACTAC  242
            || | || |||||||||||||||||||||||||||||||| || |||||| || ||||||
Sbjct  191  CG-TACCGGCTCTTGGCTCTTTGGTTGGAGCTTCCCTTGTGTCTCTCTTC-GCCTACTAC  248

Query  243  TTGCACTAAGCT-ATCTTT  260
            ||| |||||||| || |||
Sbjct  249  TTGAACTAAGCTTATATTT  267



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13163678205


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5