BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57720.1
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938756 jgi|Araly1|938756|scaffold_502947.1 1661 0.0
Ahg938755 jgi|Araly1|938755|scaffold_502946.1 791 0.0
Ahg486223 jgi|Araly1|486223|fgenesh2_kg.5__2215__AT3G57730.1 538 6e-152
> Ahg938756 jgi|Araly1|938756|scaffold_502947.1
Length=1125
Score = 1661 bits (899), Expect = 0.0
Identities = 1030/1094 (94%), Gaps = 6/1094 (1%)
Strand=Plus/Plus
Query 35 TATTTGTTTGATGAAATCGATGGTGAAGAAGTTGAAGCAGAGTCTGAGATCTGGATCGTT 94
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 12 TATTTGTTAAATGAAATCAATTGTGAAGAAGTTGAAGCAGAGTCTGAGATCTGGATCGTC 71
Query 95 AGAgaaaaggaaggaaaaggaaaaagacattcaggaagaaaagTGGTTCTTAGACAACGG 154
||||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||
Sbjct 72 AGAGAAAAGGAAGGAAAAGGAAAAAGACATTCAGGAAGAAAGGTGTTTCTTGGAAAACGG 131
Query 155 AAGCATCTTCTTGAAAGAACTTATTGCTGATTGTAACGGTAAATCCATTCCTATACGTAA 214
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 AAGCATCTTCTTGAAAGAACTTATTGCTGATTGTAACGGTAAATCCATTCCTATACGTAG 191
Query 215 CTTTTCTTCTGACCAGATCTTGAAAGCTACAAGTAACTTCGGTTCCAGTTGTTTTGTAAC 274
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CTTTTCTTCTGATCAGATCTTGAAAGCTACAAGTAACTTCGGTTCCAGTTGTTTTGTAAC 251
Query 275 CGCAGAGGGGTTTTATGTATGGTACAAAGGTATCATAGAAGATAGATCTTACATGATCAA 334
||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 252 CGCTGAGGGGTTCTACGTGTGGTACAAAGGTATCATAGAAGATAGATCTTACATGATCAA 311
Query 335 GAGATTCTCTGAGTATAAAGTTACTCAATACAGAGTAGCAGAGGTTTACAACGAAATTGT 394
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 312 GAGATTCTCCGAGTATAAAGTTACTCATTACAGAGTAGCAGAGGTTTACAACGAGATTGT 371
Query 395 CTTGTCTGCTCGGATGAGCAACCACAACAACTTTCTTAAACTTA-TAGGATTCTGTCTTG 453
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 372 TTTGTCTGCTCGGATGAGCAACCACAACAACTTTCTTAAACT-AGTAGGATTCTGTCTTG 430
Query 454 AGTTTAGTCTTCCGGTTCTTGTGTTTGAATATGCAGAACATGGAGTTTTGAATCACAGAG 513
||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 431 AGTTTTGTCTTCCGGTTCTTGTGTTTGAATATGCAGAGCATGGAGTTCTGAATCACAGAG 490
Query 514 GAGGTGTTATAGTCAATGGGGAGGAAGT-TATATTGCCTTTGAGTTTAAGGTTGAAGATT 572
|||||||||| || |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 491 GAGGTGTTATGGTTAATGGGGAGGAA-TATATATTGCCTTTGAGTTTAAGGTTGAAGATT 549
Query 573 GGAAAGGAGATTGCAAATGCTGTGACTTATCTTCACATGGCATTCCCCAAGATCCTCATA 632
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 550 GGAAAGGAGATTGCAAATGCCGTGACTTATCTTCACATGGCGTTCCCCAAGATCCTCATA 609
Query 633 CATAGACACATTAAGCCAAGGAATGTTTTCTTGGACGAGAATTGGACCCCAAAGTTGTCT 692
|||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||
Sbjct 610 CATAGACACATTAATCCAAGGAATGTTTTTTTGGACAAGAATTGGACTGCAAAGTTGTCT 669
Query 693 GATTTCTCTATCTCTATAAACCTCCCTGAGGGAAAATCAAGAATAGAAGTTGAATGTGTT 752
|||||||| ||||| |||||| ||||||||||||||||||| |||||||||||||| |||
Sbjct 670 GATTTCTCCATCTCCATAAACATCCCTGAGGGAAAATCAAGGATAGAAGTTGAATGCGTT 729
Query 753 CAGGGAACAATCGGGTACCTTGATCCAGTATATTATACCACGAAAATGGTGACGGAATAT 812
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 730 CAGGGAACAATCGGGTACCTCGATCCAGTATATTATACCACGAAAATGGTGACTGAATAT 789
Query 813 ACCGACGTGTACAGCTTTGGAGTCTTCTTGATGGTTATTCTCACTGGTAAACCAGCACTT 872
||||| |||||||||||||||||||| ||||||||| ||||||||| || |||||| ||
Sbjct 790 ACCGATGTGTACAGCTTTGGAGTCTTTTTGATGGTTGTTCTCACTGCTAGACCAGCTCTC 849
Query 873 GCATCCACTAGCTCTGATGGGGACTACAAACATATTGCTAGCTACGTGAAAGGCTTTCAT 932
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 850 GCATCCACTAGCTCTGATGGGGACTACAAACATATTGCTGGCTATGTGAAAGGCTTTCAT 909
Query 933 GAGAATGGGCAGCTTGATGGAGTAATAGATCCTAAGGTGATGGAAGACATTACAAGTGCT 992
|||||||||||||| |||||| |||||||| | |||||||||||||||||||||||||||
Sbjct 910 GAGAATGGGCAGCTCGATGGAATAATAGATTCAAAGGTGATGGAAGACATTACAAGTGCT 969
Query 993 CAAAAAGTGCATGTGGAAGCGTGTGTGGTGTT-GGCGCTGAGATGCTGCGAGCTGAGAGA 1051
|||||||||| ||||||||||||||||||||| || ||||||||| || |||||||||||
Sbjct 970 CAAAAAGTGCTTGTGGAAGCGTGTGTGGTGTTAGG-GCTGAGATGTTGTGAGCTGAGAGA 1028
Query 1052 TGAAAACAGACCAAAGATGATCCAAATAGCTAAAGAACTCAAGCAGATTGAGACATTATT 1111
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1029 TGAAAACAGACCGAAGATGATCCAAATAGCTAAAGAACTCAAGCAGATTGAGGCATTATT 1088
Query 1112 TCGGAGATCATAGC 1125
| ||||||| ||||
Sbjct 1089 TTGGAGATCCTAGC 1102
Score = 298 bits (161), Expect = 1e-79
Identities = 416/536 (78%), Gaps = 30/536 (6%)
Strand=Plus/Plus
Query 1360 GGAGTTTGCAAATGCATTGACTTATCTTCAGATGGCGTTTCCGAAGATCATCATACACAG 1419
|||| |||||||||| ||||||||||||| |||||||| || |||||| ||||||| ||
Sbjct 555 GGAGATTGCAAATGCCGTGACTTATCTTCACATGGCGTTCCCCAAGATCCTCATACATAG 614
Query 1420 AGATGTTAAGCC-AGTG-AGGATTTTCTTGGATAAGAACTGGACCGCAATGCTGACCAAT 1477
| | |||| || || | | | |||| ||||| ||||| ||||| |||| | || | ||
Sbjct 615 ACACATTAATCCAAG-GAATG-TTTTTTTGGACAAGAATTGGACTGCAAAGTTGTCTGAT 672
Query 1478 TTATCGTTTTCCAATCTCTC-TTCCTGAGGGAAAAACAAGAATTGAAACTGAAAGAG-TA 1535
|| || | ||| || | | |||||||||||| |||| || ||| |||| | | |
Sbjct 673 TTCTCCATCTCC-AT-AAACATCCCTGAGGGAAAATCAAGGATAGAAGTTGAATGCGTTC 730
Query 1536 ATGGGAACAGTAGGGTACCTGGATCC--------AT-CCACGAAGTTTGTGACGGAATAT 1586
| ||||||| | |||||||| ||||| || ||||||| | ||||| ||||||
Sbjct 731 A-GGGAACAATCGGGTACCTCGATCCAGTATATTATACCACGAAAATGGTGACTGAATAT 789
Query 1587 ACAGACGTGTACAGCTTTGGAGTCTTTTAGATGGTTGTTCTCACTGCTAGACCAGCTCTT 1646
|| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 790 ACCGATGTGTACAGCTTTGGAGTCTTTTTGATGGTTGTTCTCACTGCTAGACCAGCTCTC 849
Query 1647 GTC-TCTGCTGGATTTGATGGGGAATACAGAGGTATTACTGGCTATGTGAAAGGCTTAT- 1704
| | || || | | ||||||||| |||| | |||| ||||||||||||||||||| |
Sbjct 850 G-CATCCACTAGCTCTGATGGGGACTACAAACATATTGCTGGCTATGTGAAAGGCTT-TC 907
Query 1705 ACGAGAATGGGAAGCTCGATA-AAGTAATTGAT-CGAATGATGTTCAAAGACAATACAAA 1762
| ||||||||| |||||||| || |||| ||| | || | || | |||||| |||||
Sbjct 908 ATGAGAATGGGCAGCTCGATGGAA-TAATAGATTCAAAGG-TGATGGAAGACATTACAAG 965
Query 1763 TGGTCAAAGA-TCACAGGTGGAAGCATGCGTTGTACTT-GCGTTGAGATGCTGTGAGGAA 1820
|| ||||| | | | |||||||| || || || || | | ||||||| ||||||
Sbjct 966 TGCTCAAAAAGTG-CTTGTGGAAGCGTGTGTGGTG-TTAGGGCTGAGATGTTGTGAGCTG 1023
Query 1821 AGAGACGAAGACAGACCGAAGATGATCCAAGTAGCTAAGGAACTCAAGCGGATTGA 1876
||||| ||| |||||||||||||||||||| ||||||| |||||||||| ||||||
Sbjct 1024 AGAGATGAAAACAGACCGAAGATGATCCAAATAGCTAAAGAACTCAAGCAGATTGA 1079
> Ahg938755 jgi|Araly1|938755|scaffold_502946.1
Length=1105
Score = 791 bits (428), Expect = 0.0
Identities = 860/1059 (81%), Gaps = 67/1059 (6%)
Strand=Plus/Plus
Query 111 aaggaaaaagacattcaggaagaa-aagTGGTTCTTAGACAACGGAAGCATCTTCTTGAA 169
|||||||| |||| | || ||| | ||||||||| || ||||||||||||||||| ||
Sbjct 69 AAGGAAAAGGACA---A-GACGAAGAGGTGGTTCTTGGATAACGGAAGCATCTTCTT-AA 123
Query 170 -AGAACTTATTGCTGATTGTAACGGTAAATCCATTCCTATACGTAACTTTTCTTCTGACC 228
||||||| | ||||||||||||||||||||||||||||| || | |||||| |||| |
Sbjct 124 CAGAACTTGTCGCTGATTGTAACGGTAAATCCATTCCTATTCGCAGTTTTTCTCCTGAGC 183
Query 229 AGATCTTGAAAGCTAC-AAGTAACTTCGGTTCCAGTTGTTTTGTAACCGCAGAGGGGTTT 287
|||| ||||||||||| || || |||| ||| ||||||||||| | ||| || || |
Sbjct 184 AGATATTGAAAGCTACCAAC-AATTTCGATTCTAGTTGTTTTGTCTC-GCA-AGATGTAT 240
Query 288 TA-TGTA--TGGTACAAAGGT-ATCATAGAAGATAGATCTTACATGATCAAGAGATTCTC 343
| | || ||||| | |||| | || ||||||||||||||||||||||||||||||||
Sbjct 241 -ACTATAAGTGGTATAGAGGTCAA-ATCGAAGATAGATCTTACATGATCAAGAGATTCTC 298
Query 344 TGAGTAT-AAAGTTACTC-AATAC-A----GAGT-AGCAGAGGTTTACAACGAAATTGTC 395
||| || ||| |||| || || | |||| | ||||||||||||||| ||||||
Sbjct 299 CGAGGATGAAA-TTACAGGAAAACGACATAGAGTTAA-AGAGGTTTACAACGACATTGTC 356
Query 396 TTGTCTGCTCGGATGAGCAACCACAACAACTTTCTTAAACTTAT-AGGAT-TCTGTCTTG 453
||||||||||||||||| || |||| ||||||||| ||||| || ||||| | ||||| |
Sbjct 357 TTGTCTGCTCGGATGAGTAATCACAGCAACTTTCTGAAACT-ATTAGGATGT-TGTCTCG 414
Query 454 AGTTTAGTCTTCCGGTTCTTGTGTTTGAATAT-GCAGAACATGGAGTTTTGAATCA-CAG 511
||||| | ||||||||||||||||||||| | |||||| |||||| ||||||||| | |
Sbjct 415 AGTTTCCTTTTCCGGTTCTTGTGTTTGAAT-TCGCAGAATATGGAGCTTTGAATCAGC-G 472
Query 512 AGGAGGTGTTATAGTCAATGGGGAGGAAGT-TATATTGCCTTTGAGTTTAAGGTTGAAGA 570
|||||| |||| || ||||| || ||| | ||||||||| | |||| || |||||||||
Sbjct 473 TGGAGGTATTATGGTTAATGGTGAAGAA-TATATATTGCCGTGGAGTGTACGGTTGAAGA 531
Query 571 TTGG-AAAGGAGATTGCAAATGCTGTGACTTATCTTCACATGGCATTCCCCAAGATCCTC 629
|||| |||| |||||||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 532 TTGGGAAAG-AGATTGCAAATGCTGTGAGTTATCTTCACATGGCATTCCCTAAGATCATC 590
Query 630 ATACATAGACACATTAAGCCAAGGAATGTTTTCTTGGACGAGAATTGGACCCCAAAGTTG 689
||||||||| | |||| |||| | | |||||||||||| |||| |||||| ||||||||
Sbjct 591 ATACATAGAGATGTTAAACCAATGCACGTTTTCTTGGACAAGAACTGGACCGCAAAGTTG 650
Query 690 TCTGATTTCTC-TATCTCTATAAAC-CTCCCTGAGGGAAAATCAAGAATAGAAGTTGAAT 747
|||||||| || | |||| ||| | |||||||| ||||||||||||||||||| |||||
Sbjct 651 TCTGATTTATCCT-TCTCAATAT-CTCTCCCTGAAGGAAAATCAAGAATAGAAGCTGAAT 708
Query 748 GTGTTCAGGGAACAATCGGGTACCTTGATCCAGTATATTATACCACGAAAATGGTGACGG 807
| |||| |||||| | |||||||| |||||| ||||| ||| |||| | ||||| |
Sbjct 709 GGGTTCTTGGAACATTTGGGTACCTCGATCCATTATATCATAAGACGAGTTTTGTGACTG 768
Query 808 AATATACCGACGTGTACAGCTTTGGAGTCT-TCTTGATGGTTATTCTCACTGGTAAACCA 866
|||||||||| || |||||||||||| ||| | || |||||||||| |||||||||||
Sbjct 769 AATATACCGATGTCTACAGCTTTGGAATCTGTTTTC-TGGTTATTCTTACTGGTAAACCG 827
Query 867 GC-ACTTGCATCCACTAGCTCTGATGGGGA-CTACAAACATATTGCT-AGCTACGTGAAA 923
|| | | |||| |||| |||||||| || || ||| |||| || ||||| |||| |
Sbjct 828 GCTA-T--CATC-ACTATTTCTGATGGAGATCTCCAAGG-TATT-CTTAGCTATGTGAGA 881
Query 924 GGCTT-TCATGAGAATGGGCAGCTTGATGGAGTAATAGATCCTAAGGT-GATGGAAGACA 981
|| || | |||||||||| |||| |||| |||||||||||| || || |||| |||| |
Sbjct 882 GGGTTATG-TGAGAATGGGAAGCTCGATGAAGTAATAGATCC-AATGTTGATGAAAGATA 939
Query 982 TTACAAGTGCTCAAAAAGT-GCATGTGGAAGCGTGTGTGGTG-TTGGCGCTGAGATGCTG 1039
| ||||||| ||||| || ||| |||||||| ||||||| | ||| | ||||||||||
Sbjct 940 TCACAAGTGGTCAAAG-GTTGCAAGTGGAAGCTTGTGTGGAGCTTG-CTTTGAGATGCTG 997
Query 1040 CGAGCTGAGAGATGAAAACAGACCAAAGATGATCCAAATAGCTAAAGAACTCAAGCAGAT 1099
||| ||||||||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 998 TGAGGAAAGAGATGAAGACAGACCAAAGATGATCCAAGTAGCTAAAGAACTCAAGCGGAT 1057
Query 1100 TGA-GACATTATTTCGGAGAT-CATAGCTACAGATCCTC 1136
||| | ||| | | | | || | |||||| ||||||||
Sbjct 1058 TGAAG-CATCACTGAGAA-ATTC-TAGCTAGAGATCCTC 1093
Score = 438 bits (237), Expect = 6e-122
Identities = 601/767 (78%), Gaps = 63/767 (8%)
Strand=Plus/Plus
Query 1167 GACTATGGAGTGAAAGAGATTTACAATGACATTGTCTTGTGTGAC-CGCATGAGCAATCG 1225
||| || |||| |||||| ||||||| ||||||||||||| || | || ||||| ||||
Sbjct 322 GAC-ATAGAGTTAAAGAGGTTTACAACGACATTGTCTTGTCTG-CTCGGATGAGTAATCA 379
Query 1226 CAGCAACTTTCTCAAGCTATTAGGATGTTGTCTCGAGTTTCCTTTTATGATTCTTGTGTT 1285
|||||||||||| || |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 380 CAGCAACTTTCTGAAACTATTAGGATGTTGTCTCGAGTTTCCTTTTCCGGTTCTTGTGTT 439
Query 1286 TCAAGAT-GCAGAACT-TGGAG-TTATGAACCATCGAGGAGCTATTAAGGTTAATGGGGA 1342
| || | |||||| | ||||| || |||| || || |||| ||||| ||||||||| ||
Sbjct 440 TGAAT-TCGCAGAA-TATGGAGCTT-TGAATCAGCGTGGAGGTATTATGGTTAATGGTGA 496
Query 1343 GGAA-ACTTTACTGCCGTGGAGT-T----T-GCA-A-----A------T-GCA--T--TG 1378
||| | | || ||||||||||| | | | | | | | ||| | ||
Sbjct 497 AGAATA-TATATTGCCGTGGAGTGTACGGTTGAAGATTGGGAAAGAGATTGCAAATGCTG 555
Query 1379 --ACTTATCTTCAGATGGCGTTTCCGAAGATCATCATACACAGAGATGTTAAGCCAGTG- 1435
| ||||||||| ||||| || || |||||||||||||| ||||||||||| ||| ||
Sbjct 556 TGAGTTATCTTCACATGGCATTCCCTAAGATCATCATACATAGAGATGTTAAACCAATGC 615
Query 1436 AGGATTTTCTTGGATAAGAACTGGACCGCAATGCTGACCAATTTATCGTTTTCCAATCTC 1495
| | |||||||||| |||||||||||||||| | || | ||||||| || || ||| ||
Sbjct 616 ACG-TTTTCTTGGACAAGAACTGGACCGCAAAGTTGTCTGATTTATCCTTCTC-AATATC 673
Query 1496 TCTTCCTGAGGGAAAAACAAGAATTGAAACTGAAAGAGTAATGGGAACAGTAGGGTACCT 1555
||| ||||| |||||| ||||||| ||| ||||| | || | |||||| | ||||||||
Sbjct 674 TCTCCCTGAAGGAAAATCAAGAATAGAAGCTGAATGGGTTCTTGGAACATTTGGGTACCT 733
Query 1556 GGATCCATCC-A-C----GA--AGTTT-GTGACGGAATATACAGACGTGTACAGCTTTGG 1606
||||||| | | || ||||| ||||| |||||||| || || |||||||||||
Sbjct 734 CGATCCATTATATCATAAGACGAGTTTTGTGACTGAATATACCGATGTCTACAGCTTTGG 793
Query 1607 AGTCT-TTTAGATGGTTGTTCTCACTGCTAGACCAGCTCTTGTCTCTGCTGGATT-TGAT 1664
| ||| ||| ||||| |||| |||| || ||| ||| | || || | || ||||
Sbjct 794 AATCTGTTTTC-TGGTTATTCTTACTGGTAAACCGGCTATCATCACTA-T---TTCTGAT 848
Query 1665 GGGGAA-TACAGAGGTATTACTG-GCTATGTGAAAGGCTTATACGAGAATGGGAAGCTCG 1722
|| || | || ||||||| || ||||||||| ||| |||| ||||||||||||||||
Sbjct 849 GGAGATCTCCA-AGGTATT-CTTAGCTATGTGAGAGGGTTATGTGAGAATGGGAAGCTCG 906
Query 1723 ATAAAGTAATTGATCGAATGATGTTCAAAGACAAT-ACAAATGGTCAAAGATCACAGGTG 1781
|| ||||||| |||| |||| || | ||||| | | |||| ||||||||| | || |||
Sbjct 907 ATGAAGTAATAGATCCAATGTTGATGAAAGATA-TCACAAGTGGTCAAAGGTTGCAAGTG 965
Query 1782 GAAGCATGCGTTGTA-CTTGCGTTGAGATGCTGTGAGGAAAGAGACGAAGACAGACCGAA 1840
||||| || || | | ||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 966 GAAGCTTGTGTGG-AGCTTGCTTTGAGATGCTGTGAGGAAAGAGATGAAGACAGACCAAA 1024
Query 1841 GATGATCCAAGTAGCTAAGGAACTCAAGCGGATTGAAACATCACTGA 1887
|||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1025 GATGATCCAAGTAGCTAAAGAACTCAAGCGGATTGAAGCATCACTGA 1071
> Ahg486223 jgi|Araly1|486223|fgenesh2_kg.5__2215__AT3G57730.1
Length=1465
Score = 538 bits (291), Expect = 6e-152
Identities = 512/615 (83%), Gaps = 30/615 (5%)
Strand=Plus/Plus
Query 48 AAATC-GATGGTGAAGAAGTTGAAGCAGAGTCTGAGATCTGGAT-CGTTAGAgaaaagga 105
||||| ||| | ||||||||||| || | |||||||||||| | || | || |||| ||
Sbjct 136 AAATCAGATATTTAAGAAGTTGAAACAAAATCTGAGATCTGGGTCCG-T-GA-AAAA-GA 191
Query 106 aggaaaaggaaaaagacattcaggaagaaaag-TGGTTCTTAGACAACGGAAGCATCTTC 164
|| | |||||| || | | |||| |||| ||||| || || |||||||| ||||||
Sbjct 192 CGG---A--AAAAAG-CA-TGAAGAAGGAAAGATGGTTTTTGGAGAACGGAAGTATCTTC 244
Query 165 TTGAAAGAACTTATTGCTGATTGTAACGGTAAATCCATTCCTATACGTAACTTTTCTTCT 224
|| ||||| || || ||||||||||| |||||||||||||||||||||| |||| | |||
Sbjct 245 TTAAAAGAGCTCATCGCTGATTGTAATGGTAAATCCATTCCTATACGTAGCTTTACCTCT 304
Query 225 GACCAGATCTTG-AAAGCTA-CAAGTAACTTCGGTTCCAGTTGTTTTGTAACCGCAGAGG 282
|||||| | | ||||| | |||| || |||| ||||||||||||||| || | ||| |
Sbjct 305 TCCCAGAT-TCGCAAAGCCACCAAG-AATTTCGATTCCAGTTGTTTTGTCACTGAAGAAG 362
Query 283 GGTTTTATGTATGGTACAAAGGTATCATAGAAGATAGATCTTACATGATCAAGAGATTCT 342
|||| || |||||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct 363 GGTTCTACATATGGTACAAAGGTGTTATCGAAGATAGATCTTACATGATCAAGAGATTCT 422
Query 343 CTGAGTATAAAGTTACTCAATACAGAGTAGCAGAGGTTTACAACGAAATTGTCTTGTCTG 402
||||||||||||| || | |||||||||| ||||||||| || || |||||||||||||
Sbjct 423 CTGAGTATAAAGTCACAGATTACAGAGTAGGAGAGGTTTATAAAGACATTGTCTTGTCTG 482
Query 403 CTCGGATGAGCAACCACAACAACTTTCTTAAACTTAT-AGGAT-TCTGTCTTGAGTTTAG 460
|||||||||||||||||| |||||||||| || |||| ||||| | |||||||| |||
Sbjct 483 CTCGGATGAGCAACCACAGCAACTTTCTTCAA-TTATTAGGATGT-TGTCTTGA-TTTCC 539
Query 461 -TCTTCCGGTTCTTGTGTTTGAATATGCAGAACATGGAGTTTTGAATCA-CAGAGGAGGT 518
| ||||||||||||||||||||| ||| ||||||||| |||||||||| | ||||||||
Sbjct 540 CTTTTCCGGTTCTTGTGTTTGAATTTGCTGAACATGGATTTTTGAATCATC-GAGGAGGT 598
Query 519 GTTATAGTCAATGGGGAGGAAG-TTATATTGCCTTTGAGTTTAAGGTTGAAGATTGGAAA 577
|||| || || ||||||||| || |||||||||||||||| |||||||||||||| ||
Sbjct 599 GTTACCGTTAACGGGGAGGAATCTT-TATTGCCTTTGAGTTTGAGGTTGAAGATTGGGAA 657
Query 578 GGAGATTGCAAATGC-TGTGACTTATCTTCACATGGCATTCCCCAAGATCCTCATACATA 636
||||||||||||||| | || |||||||||||||||| ||||| |||||| | ||| ||
Sbjct 658 GGAGATTGCAAATGCCT-TGGCTTATCTTCACATGGCTTTCCCTAAGATCATTATATTTA 716
Query 637 GACACATTAAGCCAA 651
|| | | |||||||
Sbjct 717 GAGATGTGAAGCCAA 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75380594855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5