BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57730.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486223 jgi|Araly1|486223|fgenesh2_kg.5__2215__AT3G57730.1 1024 0.0
Ahg938756 jgi|Araly1|938756|scaffold_502947.1 797 0.0
Ahg938755 jgi|Araly1|938755|scaffold_502946.1 745 0.0
Ahg898723 jgi|Araly1|898723|Al_scaffold_0005_2689 84.2 3e-15
> Ahg486223 jgi|Araly1|486223|fgenesh2_kg.5__2215__AT3G57730.1
Length=1465
Score = 1024 bits (554), Expect = 0.0
Identities = 673/730 (92%), Gaps = 9/730 (1%)
Strand=Plus/Plus
Query 849 ATAGAAGCGGAAGACGTGCTGGGTACATATGGTTACCTTGATCCATTATACTTTGCAACT 908
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 737 ATAGAAGCGGAAGACGTGCTGGGCACATATGGTTACCTTGATCCATTATACTTTGCAACT 796
Query 909 AGAATTGTGACAGAATATACGGATGTGTACAGCTTTGGAGTCTTTTTGATGGTTGTTATC 968
|||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 797 AGAATTGTGACAGAGTATACTGATGTGTACAGCTTTGGAGTCCTTTTGATGGTTGTTATG 856
Query 969 ACTGGTATATCGGTTTACTTCACCGGATCTGATGGGTATCCTGTAGGTATTCTTGGATAT 1028
||||| | ||||||||||||||| ||| |||| || |||| ||||||||||||| ||||
Sbjct 857 ACTGGCAGATCGGTTTACTTCACTGGACCTGACGGATATCGAGTAGGTATTCTTGCATAT 916
Query 1029 ATGAAAGGCTTAGCTGAGAATGGGAAGCTCAATGAAATAGTATATCCTATGATAATGAAA 1088
||||||| ||| |||||||||||||||||| |||| || ||| ||||||||| ||| ||
Sbjct 917 GTGAAAGGTTTATCTGAGAATGGGAAGCTCAGTGAAGTAATATGTCCTATGATGATGCAA 976
Query 1089 GAGATGACAAGTGCTCAAAGATTGCAGGTGGAAGCATGCGTTTTACTTGCACTGAGATGC 1148
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 977 GACATGACAAGTGCTCAAAGATTGCAGGTGGAAGCGTGTGTTTTACTTGCACTGAGATGC 1036
Query 1149 TGCGAGGAGAGGGTAGAAGACAGACCGAAGATGATTCAGGTAGCTAAAGAACTCAAGCGG 1208
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGCGAGGAGAGGGTTGAAGACAGACCGAAGATGATTCAGGTAGCTAAAGAACTCAAGCGG 1096
Query 1209 ATTGAACATCATGTTTTGAGATCCTAGCTAGAGATCAGCTCTACTCTTAGACTGTATAGC 1268
|| |||||||||||||||||||||||||||| |||| || |||||| ||||||||||||
Sbjct 1097 ATAGAACATCATGTTTTGAGATCCTAGCTAGTGATCCTCTATACTCTCAGACTGTATAGC 1156
Query 1269 CAAGTTTCAAATTTATTACTTTTGAAAGTTTGGAACGC-ATATGATTGTGGACCTGAAGG 1327
|||||||||||||||||| || |||||||||||||| | | |||| ||||||||||||
Sbjct 1157 CAAGTTTCAAATTTATTAGTTCTGAAAGTTTGGAACTCAAGCGGATTATGGACCTGAAGG 1216
Query 1328 ATGCCAAAGAGTTTAAGGGGTTAGAAAGACTTGTGAAAGCCTCTATGTCCGACCCAAACA 1387
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1217 ATGCCAAAGAGTTTAAGGGGTTAGAAAGACTT-TGAAAGCCTCTATGTCCGACCCAAACA 1275
Query 1388 AAGTCTACTTTGTGTAGAGTTGTCTAAAAGCCTATGCTTATATATGGTCTTTCTCTGTTT 1447
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1276 AAGTCTACTTTGTGTAGAGTTGTCTAAAAGCCTTTGCTTATATATGGTCTTTCTCTGTTT 1335
Query 1448 TTCAGTTTTCTCTAGTATTTTTGTTGTTATGTA---TGGCTAGATTTCAGTTTGGCCCTG 1504
||||| |||||||||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct 1336 TTCAGATTTCTCTAGTATTTTTGTTGATATGTAACATGGCTAGATTTCAGTTTGGGCCTA 1395
Query 1505 ATGGCGTCATAATGAAACTGCAAAGCT----CTGCATTATTAGTTTCAGAACTTACAAAG 1560
||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1396 ATGGCGTCATAATGAAACTGCAAAGCTATTTCTGCATTATTAGTTCCAGAAGTTACAAAG 1455
Query 1561 ATGGTTTACA 1570
||| ||||||
Sbjct 1456 ATGATTTACA 1465
Score = 852 bits (461), Expect = 0.0
Identities = 548/590 (93%), Gaps = 6/590 (1%)
Strand=Plus/Plus
Query 183 AAGAAATTGAAGCAAAATCTGAGAACTGGGTCCTG-gaaaaagaaggaaaaaagcatgaa 241
||||| ||||| |||||||||||| |||||||| | |||||||| |||||||||||||||
Sbjct 149 AAGAAGTTGAAACAAAATCTGAGATCTGGGTCC-GTGAAAAAGACGGAAAAAAGCATGAA 207
Query 242 gaaggaaagATGGTTCTTAGAGAATGGAAGTATCTTCTTAAAAGAGCTCATCGTTGATTG 301
||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||
Sbjct 208 GAAGGAAAGATGGTTTTTGGAGAACGGAAGTATCTTCTTAAAAGAGCTCATCGCTGATTG 267
Query 302 TAATGGTAAATCCATTCCTATACGTAGCTTTACTTCTTCCCAGATTCGTAAAGCCACCAA 361
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 268 TAATGGTAAATCCATTCCTATACGTAGCTTTACCTCTTCCCAGATTCGCAAAGCCACCAA 327
Query 362 GAATTTCGATTTAAGCTGTTTTGT-AGCTGAAGAAGGGTTCTACATATGGTACAAAGGTG 420
||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 328 GAATTTCGATTCCAGTTGTTTTGTCA-CTGAAGAAGGGTTCTACATATGGTACAAAGGTG 386
Query 421 TAATCGAAGATAGATCTTACATGATCAAGAGATTCTCTGAGTATAAAGTCACTGATTACA 480
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 387 TTATCGAAGATAGATCTTACATGATCAAGAGATTCTCTGAGTATAAAGTCACAGATTACA 446
Query 481 GAGTAAGTGAGGTTTATAAAGACATTGTCTTGTCTGCTCGTATGAGCAACCACAACAACT 540
||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 447 GAGTAGGAGAGGTTTATAAAGACATTGTCTTGTCTGCTCGGATGAGCAACCACAGCAACT 506
Query 541 TTCTTAAACTACTAGGATGTTGTCTTGAGTTCCCTTTTCCTGTTCTTGTGTTTGAATTTG 600
||||| || || |||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 507 TTCTTCAATTATTAGGATGTTGTCTTGATTTCCCTTTTCCGGTTCTTGTGTTTGAATTTG 566
Query 601 CTGAGCATGGAGTTTTGAATTACCGAGGAGGTATTACGGTTAACGGTGAAGAGTCTTTAT 660
|||| |||||| |||||||| | ||||||||| |||| |||||||| || || |||||||
Sbjct 567 CTGAACATGGATTTTTGAATCATCGAGGAGGTGTTACCGTTAACGGGGAGGAATCTTTAT 626
Query 661 TGCCTTTGAGTTTGAGGTTGAAGATTGGGAAGGAGATTGCAAATGCCTTGGCTTATCTTC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 TGCCTTTGAGTTTGAGGTTGAAGATTGGGAAGGAGATTGCAAATGCCTTGGCTTATCTTC 686
Query 721 ACATGGCGTTTCC-TAAGATCATCATATATAGAGATGTGAAGCCACTGCA 769
||||||| ||||| ||||||||| |||| |||||||||||||||| ||||
Sbjct 687 ACATGGC-TTTCCCTAAGATCATTATATTTAGAGATGTGAAGCCAATGCA 735
Score = 150 bits (81), Expect = 3e-35
Identities = 104/115 (90%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 1 GTCTATCATTTCGTTCTGTGGAATTTTCAACGATGGGTTTTGTCTTCTGTATTCAAGCCG 60
|||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||
Sbjct 1 GTCTCTCATTTCGTTCTGTGGAATTTTCAACGATGGGTTCCGTCTTTTGTCTTCAAACCG 60
Query 61 GGAAAAGGTGCTGTCTTTGTAATGCACCCAGAAAGTTTAAAGAGTGGATTTTCAG 115
||||||||| ||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 61 GGAAAAGGTACTGTCTT-GTT-TGCACCCAGAAAGTTTAAAGATTGGATTTTCAG 113
> Ahg938756 jgi|Araly1|938756|scaffold_502947.1
Length=1125
Score = 797 bits (431), Expect = 0.0
Identities = 890/1108 (80%), Gaps = 46/1108 (4%)
Strand=Plus/Plus
Query 158 TATTTGTTGAATGGAATCGATGGTGAAGAAATTGAAGCAAAATCTGAGAACTGGGTC--C 215
|||||||| |||| |||| || |||||||| |||||||| | ||||||| |||| || |
Sbjct 12 TATTTGTTAAATGAAATCAATTGTGAAGAAGTTGAAGCAGAGTCTGAGATCTGGATCGTC 71
Query 216 TG-gaaaaagaagg---a--aaaaag-ca-tgaagaaggaaagATGGTTCTTAGAGAATG 267
| ||||| ||||| | |||||| || | | ||| ||||| || ||||| || || |
Sbjct 72 AGAGAAAAGGAAGGAAAAGGAAAAAGACATTCAGGAA-GAAAGGTGTTTCTTGGAAAACG 130
Query 268 GAAGTATCTTCTTAAAAGAGCTCATCGTTGATTGTAATGGTAAATCCATTCCTATACGTA 327
|||| |||||||| ||||| || || | ||||||||| ||||||||||||||||||||||
Sbjct 131 GAAGCATCTTCTTGAAAGAACTTATTGCTGATTGTAACGGTAAATCCATTCCTATACGTA 190
Query 328 GCTTTACTTCTTCCCAGATTCGT-AAAGCCACCAAG-AATTTCGATTTAAGCTGTTTTGT 385
||||| ||||| |||| || | ||||| | |||| || |||| || || ||||||||
Sbjct 191 GCTTTTCTTCTGATCAGA-TCTTGAAAGCTA-CAAGTAACTTCGGTTCCAGTTGTTTTGT 248
Query 386 AGCTGAAGAAGGGTTCTACATATGGTACAAAGGTGTAATCGAAGATAGATCTTACATGAT 445
| | | || ||||||||| | |||||||||||| | || ||||||||||||||||||||
Sbjct 249 AACCGCTGAGGGGTTCTACGTGTGGTACAAAGGTATCATAGAAGATAGATCTTACATGAT 308
Query 446 CAAGAGATTCTCTGAGTATAAAGTCACTGATTACAGAGTAAG-TGAGGTTTATAAAGACA 504
|||||||||||| ||||||||||| ||| |||||||||| || |||||||| || || |
Sbjct 309 CAAGAGATTCTCCGAGTATAAAGTTACTCATTACAGAGT-AGCAGAGGTTTACAACGAGA 367
Query 505 TTGTCTTGTCTGCTCGTATGAGCAACCACAACAACTTTCTTAAACTACTAGGATGT-TGT 563
|||| ||||||||||| |||||||||||||||||||||||||||||| |||||| | |||
Sbjct 368 TTGTTTTGTCTGCTCGGATGAGCAACCACAACAACTTTCTTAAACTAGTAGGAT-TCTGT 426
Query 564 CTTGAGTTCCCTTTTCCTGTTCTTGTGTTTGAATTTGCTGAGCATGGAGTTTTGAATTAC 623
|||||||| | |||| |||||||||||||||| ||| |||||||||||| ||||| ||
Sbjct 427 CTTGAGTTTTGTCTTCCGGTTCTTGTGTTTGAATATGCAGAGCATGGAGTTCTGAATCAC 486
Query 624 CGAGGAGGTATTACGGTTAACGGTGAAGAGTCTTTATTGCCTTTGAGTTTGAGGTTGAAG 683
|||||||| ||| |||||| || || || | | |||||||||||||||| |||||||||
Sbjct 487 AGAGGAGGTGTTATGGTTAATGGGGAGGAATATATATTGCCTTTGAGTTTAAGGTTGAAG 546
Query 684 ATTGGGAAGGAGATTGCAAATGCCTTGGCTTATCTTCACATGGCGTTTCCTAAGATCATC 743
||||| |||||||||||||||||| || ||||||||||||||||||| || |||||| ||
Sbjct 547 ATTGGAAAGGAGATTGCAAATGCCGTGACTTATCTTCACATGGCGTTCCCCAAGATCCTC 606
Query 744 ATATATAGAGATGTGAAGCCACTGCATGTTTTCTTGGACAATAATTGGACTGCAAAGTTG 803
||| ||||| | | || ||| | ||||||| |||||||| ||||||||||||||||||
Sbjct 607 ATACATAGACACATTAATCCAAGGAATGTTTTTTTGGACAAGAATTGGACTGCAAAGTTG 666
Query 804 TCTGATTTATCTTTCTCAAT-ATCGCTGGAAGAGGGAAAATCACA-GATAGAAGCGGAA- 860
|||||||| || |||| || | | | |||||||||||| | |||||||| |||
Sbjct 667 TCTGATTTCTCCATCTCCATAAAC-ATCCCTGAGGGAAAATCA-AGGATAGAAGTTGAAT 724
Query 861 GACGTGCTGGGTACATAT-GGTTACCTTGATCCATTATACTT-TGCAACTAGAATTGTGA 918
| ||| | ||| ||| || || ||||| |||||| |||| || | | || | ||| ||||
Sbjct 725 G-CGTTCAGGGAACA-ATCGGGTACCTCGATCCAGTATA-TTATACCACGAAAATGGTGA 781
Query 919 CAGAATATACGGATGTGTACAGCTTTGGAGTCTTTTTGATGGTTGTTATCACTGGTATAT 978
| |||||||| |||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 782 CTGAATATACCGATGTGTACAGCTTTGGAGTCTTTTTGATGGTTGTTCTCACTGCTAGAC 841
Query 979 CGGTT-TA-CTTC-ACCGGATCTGATGGGTA-TCCTGTAGGTATT-CTTGGATATATGAA 1033
| | | | | || || | ||||||||| | | | | |||| || || ||| ||||
Sbjct 842 CAGCTCTCGCATCCACTAGCTCTGATGGGGACTACAA-ACATATTGCT-GGCTATGTGAA 899
Query 1034 AGGCTTAGC-TGAGAATGGGAAGCTCAATGAAATAGTATATCCTATGATAATGAAAGAGA 1092
|||||| | |||||||||| ||||| ||| |||| || || | | | | ||| |||| |
Sbjct 900 AGGCTTT-CATGAGAATGGGCAGCTCGATGGAATAATAGATTCAAAGGTGATGGAAGACA 958
Query 1093 TGACAAGTGCTCAAAGATTGCAGGTGGAAGCATGCGTTTTACTT-GCACTGAGATGCTGC 1151
| ||||||||||||| | ||| |||||||| || || | || | |||||||| ||
Sbjct 959 TTACAAGTGCTCAAAAAGTGCTTGTGGAAGCGTGTGTGGTG-TTAGGGCTGAGATGTTGT 1017
Query 1152 GAG--GAGAGGGTAGAAGACAGACCGAAGATGATTCAGGTAGCTAAAGAACTCAAGCGGA 1209
||| ||||| | ||| |||||||||||||||| || |||||||||||||||||| ||
Sbjct 1018 GAGCTGAGAGA-T-GAAAACAGACCGAAGATGATCCAAATAGCTAAAGAACTCAAGCAGA 1075
Query 1210 TTGAA-CATCATGTTTTGAGATCCTAGC 1236
|||| ||| || ||| |||||||||||
Sbjct 1076 TTGAGGCATTAT-TTTGGAGATCCTAGC 1102
> Ahg938755 jgi|Araly1|938755|scaffold_502946.1
Length=1105
Score = 745 bits (403), Expect = 0.0
Identities = 864/1079 (80%), Gaps = 61/1079 (6%)
Strand=Plus/Plus
Query 197 AAATCTGAGAACTGGGTCCT-Ggaaaaagaaggaaaaaagcatgaagaaggaa-agATGG 254
||||||| | |||||| || ||| || ||||| ||||| | ||| | ||| || |||
Sbjct 42 AAATCTG-GGTCTGGGT-CTCGGACAAGGAAGG--AAAAGGA-CAAG-ACGAAGAGGTGG 95
Query 255 TTCTTAGAGAATGGAAGTATCTTCTTAAAAGAGCTCATCGTTGATTGTAATGGTAAATCC 314
||||| || || ||||| |||||||||| ||| || ||| ||||||||| |||||||||
Sbjct 96 TTCTTGGATAACGGAAGCATCTTCTTAACAGAACTTGTCGCTGATTGTAACGGTAAATCC 155
Query 315 ATTCCTATACGTAGCTTTACTTCTTCCCAGAT-TCGTAAAGCCACCAAGAATTTCGATT- 372
|||||||| || || ||| || || ||||| | | ||||| ||||| ||||||||||
Sbjct 156 ATTCCTATTCGCAGTTTTTCTCCTGAGCAGATATTG-AAAGCTACCAACAATTTCGATTC 214
Query 373 TAAGCTGTTTTGTAGCT-G-AAGAAGGGTTCTACATA-TGGTACAAAGGTGTAATCGAAG 429
| || |||||||| || | |||| | | ||| | | ||||| | |||| ||||||||
Sbjct 215 T-AGTTGTTTTGT--CTCGCAAGATGTATACTATA-AGTGGTATAGAGGTCAAATCGAAG 270
Query 430 ATAGATCTTACATGATCAAGAGATTCTCTGAGTAT-AAAGTCACTG-ATTAC-A----GA 482
|||||||||||||||||||||||||||| ||| || ||| | || | | || | ||
Sbjct 271 ATAGATCTTACATGATCAAGAGATTCTCCGAGGATGAAATT-ACAGGAAAACGACATAGA 329
Query 483 GT-AAGTGAGGTTTATAAAGACATTGTCTTGTCTGCTCGTATGAGCAACCACAACAACTT 541
|| || |||||||| || |||||||||||||||||||| ||||| || |||| ||||||
Sbjct 330 GTTAAA-GAGGTTTACAACGACATTGTCTTGTCTGCTCGGATGAGTAATCACAGCAACTT 388
Query 542 TCTTAAACTACTAGGATGTTGTCTTGAGTTCCCTTTTCCTGTTCTTGTGTTTGAATTTGC 601
||| |||||| ||||||||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 389 TCTGAAACTATTAGGATGTTGTCTCGAGTTTCCTTTTCCGGTTCTTGTGTTTGAATTCGC 448
Query 602 TGAGCATGGAGTTTTGAATTACCGAGGAGGTATTACGGTTAACGGTGAAGAGTCTTTATT 661
|| |||||| ||||||| | || |||||||||| |||||| |||||||| | | ||||
Sbjct 449 AGAATATGGAGCTTTGAATCAGCGTGGAGGTATTATGGTTAATGGTGAAGAATATATATT 508
Query 662 GCCTTTGAGTTTGA-GGTTGAAGATTGGGAAGGAGATTGCAAATGCCT-TG-GCTTATCT 718
||| | |||| | | |||||||||||||||| |||||||||||||| | || | ||||||
Sbjct 509 GCCGTGGAGTGT-ACGGTTGAAGATTGGGAAAGAGATTGCAAATGC-TGTGAG-TTATCT 565
Query 719 TCACATGGCGTTTCCTAAGATCATCATATATAGAGATGTGAAGCCACTGCATGTTTTCTT 778
||||||||| || ||||||||||||||| |||||||||| || ||| |||| ||||||||
Sbjct 566 TCACATGGCATTCCCTAAGATCATCATACATAGAGATGTTAAACCAATGCACGTTTTCTT 625
Query 779 GGACAATAATTGGACTGCAAAGTTGTCTGATTTATCTTTCTCAATATCGCTGGAAGAGGG 838
|||||| || ||||| |||||||||||||||||||| ||||||||||| || || ||
Sbjct 626 GGACAAGAACTGGACCGCAAAGTTGTCTGATTTATCCTTCTCAATATCTCTCCCTGAAGG 685
Query 839 AAAATCACAGA-TAGAAGCGGAA-GACGTGCTGGGTACATATGGTTACCTTGATCCATTA 896
||||||| ||| ||||||| ||| | || || || |||| ||| ||||| |||||||||
Sbjct 686 AAAATCA-AGAATAGAAGCTGAATGG-GTTCTTGGAACATTTGGGTACCTCGATCCATTA 743
Query 897 TA-CTTT-GCAACTAGAATTGTGACAGAATATACGGATGTGTACAGCTTTGGAGTCT-TT 953
|| | | | | | || ||||||| |||||||| ||||| |||||||||||| ||| ||
Sbjct 744 TATCATAAG-A-CGAGTTTTGTGACTGAATATACCGATGTCTACAGCTTTGGAATCTGTT 801
Query 954 TTGATGGTTGTTATCACTGGTATATCGGTT-TACTTCACCGGATCTGATGG-GTATCCTG 1011
|| ||||| || | ||||||| | ||| | | | |||| |||||||| | ||| |
Sbjct 802 TTC-TGGTTATTCTTACTGGTAAACCGGCTAT-CATCACTATTTCTGATGGAG-ATC-TC 857
Query 1012 TA-GGTATTCTTGGATATATGAAAGGCTTA-GCTGAGAATGGGAAGCTCAATGAAATAGT 1069
| ||||||||| | ||| ||| ||| ||| | |||||||||||||||| ||||| || |
Sbjct 858 CAAGGTATTCTTAGCTATGTGAGAGGGTTATG-TGAGAATGGGAAGCTCGATGAAGTAAT 916
Query 1070 ATATCCTATGATAATGAAAGAGATGACAAGTGCTCAAAGATTGCAGGTGGAAGCATGCGT 1129
| |||| ||| | |||||||| || ||||||| |||||| ||||| |||||||| || ||
Sbjct 917 AGATCCAATGTTGATGAAAGATATCACAAGTGGTCAAAGGTTGCAAGTGGAAGCTTGTGT 976
Query 1130 TTTA-CTTGCACTGAGATGCTGCGAGGAGAGGG-TAGAAGACAGACCGAAGATGATTCAG 1187
| ||||| |||||||||| ||||| || | | ||||||||||| |||||||| ||
Sbjct 977 GG-AGCTTGCTTTGAGATGCTGTGAGGAAAGAGAT-GAAGACAGACCAAAGATGATCCAA 1034
Query 1188 GTAGCTAAAGAACTCAAGCGGATTGAA-CATCA-TGTTTTGAGATCCTAGCTAGAGATC 1244
||||||||||||||||||||||||||| ||||| || || || |||||||||||||
Sbjct 1035 GTAGCTAAAGAACTCAAGCGGATTGAAGCATCACTGA---GAAATTCTAGCTAGAGATC 1090
> Ahg898723 jgi|Araly1|898723|Al_scaffold_0005_2689
Length=348
Score = 84.2 bits (45), Expect = 3e-15
Identities = 210/286 (73%), Gaps = 26/286 (9%)
Strand=Plus/Plus
Query 252 TGGTTCTTAGAGAATGGAAG--TATCTTCTTAAAAGAGCTCATCGTT-GATTGTAATGGT 308
||||||||||| || ||||| || ||| | ||||||||||| ||| || || || |||
Sbjct 43 TGGTTCTTAGACAACGGAAGCACAT-TTC-TCAAAGAGCTCATTGTTGGA-TGCAACGGT 99
Query 309 AAATCCATTCCTATACGTAGCTTTACTTCTTCCCAGATTCGT-AAAGCCACCAA-GAATT 366
||| | | |||||| | |||||| | ||| ||||| || | || ||||| || | ||
Sbjct 100 AAAACAAATCCTATCCAAAGCTTTTCCTCTGACCAGA-TCCTCAAGGCCACAAATGGCTT 158
Query 367 TCGATTTAAGCTGTTTTGT-AGCTGAAG-AAGGGTT-CTACATATGGTACAAAGGT-GTA 422
| ||| |||| | | ||| | | | || | || ||||| |||| || |||| |
Sbjct 159 T-GATCCAAGCCGCTATGTCA-C-G-AGTGACCTTTACTACACCTGGTTCACAGGTAG-C 213
Query 423 ATCGAAGATAGATCTTACATGATCAAGA-GATTCTCTGAGTATAAAGTCACTG-AT-TAC 479
|||||||||||||||||||||||||||| | ||| ||||| | ||||||| | | |
Sbjct 214 ATCGAAGATAGATCTTACATGATCAAGATGTTTC-CTGAGGAGAAAGTCAGAGGAGATGG 272
Query 480 AGA-GTAAGTG-AG--GTTTATAAAGACATTGTCTTGTCTGCTCGT 521
||| | || || || ||||| || ||||||||| | |||||||||
Sbjct 273 AGATGGAATTGGAGCTGTTTACAACGACATTGTCATATCTGCTCGT 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5