BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57740.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486224 jgi|Araly1|486224|fgenesh2_kg.5__2216__AT3G57740.1 1642 0.0
> Ahg486224 jgi|Araly1|486224|fgenesh2_kg.5__2216__AT3G57740.1
Length=1077
Score = 1642 bits (889), Expect = 0.0
Identities = 1015/1077 (94%), Gaps = 3/1077 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTGTTGGAGGAAGAAGTC---GAAGAAGAAGAACTCAGAAGCAAATCAACGGCAA 57
||||||||||||||||| || | |||||||||||||| |||| ||||||||||| |
Sbjct 1 ATGAGTTGTTGGAGGAACAACACAAAGAAGAAGAAGAACTTTGAAGTAAATCAACGGCTA 60
Query 58 AGATGGTTCCAAGAGAACGGGAAGGTACTCTTAGAAGATCTCATCGAGCTTTGCAATGGC 117
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATTGTTCCAAGAGAACGGGAAGGTACTCTTAGAAGATCTCATCGAGCTTTGCAATGGC 120
Query 118 AAATCCAATCCAATCAAAACCTTCTCTGCTGAAGAAATCCTCCAAGCCACCGATAACTTC 177
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 121 AAATCCAATCCAATCAAAACCTTCTCTGCTAAAGAAATCCTCGAAGCCACCGATAACTTC 180
Query 178 AGCGAGAGCAATCTCGTGATTCGGTTCAACTTTATGTACAGAGGTATACTCCAAAACCGT 237
||||||||||||||||||||||||||| | ||||||||||||| ||| ||||||||||||
Sbjct 181 AGCGAGAGCAATCTCGTGATTCGGTTCGAGTTTATGTACAGAGATATGCTCCAAAACCGT 240
Query 238 CCTGTTTTGATCAAAAGAGCCACATGGAACTACTACAAATCTGATACATTAGAAAAGATC 297
|||||| | ||||||||| ||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct 241 CCTGTTCTAATCAAAAGAACCATATGGAGTTACTACAAATCCGATACATTAGATAAGATC 300
Query 298 TGTCGTGACATAGCGGTCTCATCAATGGTTAGTGGTCACAAGAATTTCCTCAAATTGTTA 357
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 301 TGTCGTGACATAGCAGTCTCATCAATGGTGAGTGGTCACAAGAATTTCCTCAAATTTTTA 360
Query 358 GGATGTTGTCTTGAGTTTGAGCATCCGGTCTTAGTTTGCGAGTATGCAGAACGTATACCA 417
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 GGATGTTGTCTTGAGTTTGAGCATCCGGTCTTAGTTTGTGAGTATGCAGAACGTATACCT 420
Query 418 TTCAATACTCCAAACCCGGAAATGTTGTTACCGTGGAGAATGCGAATAAAGATTGCCAAA 477
|| ||||||||||||||||||||||||||||| ||| |||||||||||||| |||| |||
Sbjct 421 TTTAATACTCCAAACCCGGAAATGTTGTTACCTTGGGGAATGCGAATAAAGGTTGCGAAA 480
Query 478 GAGATTGCGATTGCGGTTTCTTACCTTCACACCGCGTTGTCAAGAACTATGATTCATACG 537
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 481 GAGATTGCGATTGCGGTTTCTTACCTTCACACCGCCTTTTCAAGAACTATGATTCATACG 540
Query 538 GATATACAACCTTTTAACATTTTCGTGGATTCCAATGGGACAGCAAAGCTAAGTGACTTT 597
||||||||||||| |||||||||| ||||||| |||||||||||||||||||||| |||
Sbjct 541 GATATACAACCTTCTAACATTTTCTTGGATTCAAATGGGACAGCAAAGCTAAGTGGGTTT 600
Query 598 TGTCTTTGTATCGCAATTCCAGAAGGAGAGACATTTGTTAAGGTTCATGCTGATAGAGTA 657
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGTCTTTGTATCTCAATTCCTGAAGGAGAGACATTTGTTAAGGTTCATGCTGATAGAGTA 660
Query 658 GAAGGAACATTAGATTATCTAGAGTATAACTACGCGGCGACCGGATTGATCACCGAGTAT 717
||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 661 GAAGGCACATTAGATTATCTTGAGTATAACTATGCGGCGACCGGATTGATCACTGAGTAT 720
Query 718 ACCGATGTTTTTAGCTTTGGAGTGTTGTTGCAAAACTTTTTCACAAGAACGTACGGAGTG 777
||||||||||||||||| |||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 721 ACCGATGTTTTTAGCTTCGGAGTGTTGTTGCAAAACTTTTTCACCAGAATGTATGGAGTG 780
Query 778 GTTGATTGTTGTTGCAGTGAAGATGAGAGTCTATTTGAAGAGTTTGAAGACAAACAAAAT 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTGATTGTTGTTGCAGTGAAGATGAGAGTCTATTTGAAGAGTTTGAAGACAAACAAAAC 840
Query 838 GTAATGAATCTAAGGATTTCAGATAGGATATCCAAATTTGTGGAAGAGGGAAGAATCTTT 897
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 841 GTAATGAATCTAAGGATTTCAGATAGGATATCCAAATTTATAGAAGAGGGAAGAATCTTT 900
Query 898 GACATGTTGGATCCAAAAATGTTGGAAAGTATGGGTGATGATGAAACCGAAGAACACAAG 957
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GAGATGTTGGATCCAAAAATGTTGGAAAGTATGGGTGATGATGAAACCGAAGAACACAAG 960
Query 958 ATACGACGAATGAAAGCAGTCCTTATGCTCTCACTCAGATGTACTGGTCATAGAGGTGAT 1017
||||| |||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 961 ATACGGCGAATGGAAGCAGTTCTTATGCTGTCACTCAGATGCACTGGTCATAGAGGTGAT 1020
Query 1018 GTTCCAAAGATGATGGAAGTTGCCAAGGAACTAAAAAGGATTGAGAGATGGACATAG 1074
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 GTTCCAAAGATGATGGAAGTTGCCAAGGAACTCAAAAGGATTGAGAGATGGACATAG 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5