BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57750.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486225 jgi|Araly1|486225|fgenesh2_kg.5__2217__AT3G57750.2 1823 0.0
> Ahg486225 jgi|Araly1|486225|fgenesh2_kg.5__2217__AT3G57750.2
Length=1199
Score = 1823 bits (987), Expect = 0.0
Identities = 1056/1090 (97%), Gaps = 1/1090 (0%)
Strand=Plus/Plus
Query 25 AGATGAGCAAGAACAATAAGAAGAAGAGAAGATGGGATTTGAAGAACGGAGGGATTCTAT 84
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 74 AGATGAGCAAGAACAATAAGAAGAAGAGAAGATCGGATTTGAAGAACGGAGGGATTCTAT 133
Query 85 TAGAGGAGCTAATCGCTTCCTTCGACGGCAAAACCAATCCGATTCGTTGCTTCTCCTCCG 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TAGAGGAGCTAATCGCTTCCTTCGACGGCAAAACCAATCCGATTCGTTGCTTCTCCTCCG 193
Query 145 ATCAGATCCTTAAAGCTACCGACAATTTCTCCGAAAGCCGAATTATCTCCAGCTGGGGAT 204
|||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 194 ATCAGATCCTTAAAGCGACCGACAATTTCTCCGAGAGCAGAATTATCTCCAGCTGGGGAT 253
Query 205 ACTTCATATGGTACAAAGGCGTAATCGAAGAAAGACAAGTTTCAATCAAGAAATGGTCGA 264
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 254 ACTTCATCTGGTACAAAGGCGTAATCGAAGAAAGACCAGTTTCAATCAAGAAATGGTCGA 313
Query 265 GTCAAAATCTCTCAAGCTTCACAGAAGCGTATAGAGATATCTCTGTATCCTCTCAGATGA 324
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 314 GTCAGAATCTCTCAAGCTTCACAGAAGCGTATCGAGATATCTCTGTATCCTCTCAGATGA 373
Query 325 GTGGACACAAGAACGCTTTAAAGCTTATAGGTTGTTGTTTGGAGTTTGATCTTCCAGCTT 384
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 374 GTGGACACAAGAATGCTTTAAAGCTTATAGGTTGTTGTTTGGAATTTGATCTTCCAGCTT 433
Query 385 TAGTCTGTGAATACACAGAACACGGACCGCTTAATAGAGACGGAGGACTCTCAAGTGGAG 444
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TAATCTGTGAATACACAGAACACGGACCGCTTAATAGAGACGGAGGACTCTCAAGTGGAG 493
Query 445 TGGTTTTACCATGGAAAGTGAGATTGAAGATTGCTAAAGAGATAGCTAGTTCTGTGACTT 504
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 494 AGGTTTTACCATGGAAAGTGCGATTGAAGATTGCTAAGGAGATAGCTAGTTCTGTGACTT 553
Query 505 ATCTTCACACGGCGTTTCCAGAGACTATAGTCCATCGGAATATAAATCCGACGAACATTT 564
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 554 ATCTTCACACGGCGTTTCCAGAGACTATAATCCATCGGAATATAAATCCAACGAACATTT 613
Query 565 TCATTGATGAGAATTGGACGGCGAAGCTTTCTGATTTCTGGTTCTGTGTTGCAATACCAG 624
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 614 TCATTGACGAGAATTGGACGGCGAAGCTTTCTGATTTCTGGTTCTGTGTTGCTATACCAG 673
Query 625 AGGGGGAATTGTATGTAGAAGATGATGTGAAAGGTGTGATTGGTTTTGTTGATCCGGACT 684
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 674 AAGGGGAATTGTATGTAGAAGATGATGTGAAAGGTGTGATTGGTTTTGTTGATCCAGATT 733
Query 685 ATTACTGGACAATGAAAGTTACTGAGAAAGTGGATATTTATAGCTTTGGTGTTGTGATGT 744
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 734 ATTACTGGACAATGAAAGTTACTGAGAAAGTTGATATTTATAGCTTTGGTGTTGTGATGT 793
Query 745 TGGTTTTGTTGTCTGGAAGAGCTGCTGTGTTTAATGGACCAGATGAGGCTCCTATGTCGC 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TGGTTTTGTTGTCTGGAAGAGCTGCTGTGTTTAATGGACCAGATGAGGCTCCTATGTCGC 853
Query 805 TTAATGATCATGTGTCTGAGGTAATGGAGAAAGGTGAGTTTGATGAGATTGTTGATAAAG 864
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 TTAACGATCATGTGTCTGAGGTAATGGAGAAAGGTGAGTTTGATGAGATTGTTGATAAAG 913
Query 865 AGATATGGAATGATTTGGGTGGGGATGATGATTTGGTTTTGAGACGGTCTCAGGTTAAAG 924
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 914 AGATATGGAATGATTTGGGTGGGGATGATGATTTGGTTCTGAGACGGTCACAGGTTAAAG 973
Query 925 CGTTTCTTAGATTAGCGTTGAGATGTGTAAGATATAAGAAGGAAGATCCAGTGAGTGGTA 984
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||
Sbjct 974 CGTTTCTTAGATTAGCGTTGAGATGTGTACGATATAAGAAGCAAGATCCAGTGGGTAGTA 1033
Query 985 TGCTTGAAGTTGCTAAAGAGCTCAAATTGATTGAGAAACTCTCTTGATTAGTCTTCCTTG 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TGCTTGAAGTTGCTAAAGAGCTCAAATTGATTGAGAAACTCTCTTGATTAGTCTTCCTTG 1093
Query 1045 TCTTGTTAGTTTCTTCATACCTCTTGAAAGAATGATAACTTCTGAGAAGTTTTAGTGATG 1104
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TCTTGTTAGTGTCTTTATACCTCTTGAAAGAATGATAACTTCTGAGAAGTTTTAGTGATA 1153
Query 1105 TCTCAA-TGT 1113
||||| |||
Sbjct 1154 ACTCAAATGT 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5