BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57760.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486227 jgi|Araly1|486227|fgenesh2_kg.5__2219__AT3G57760.1 2001 0.0
> Ahg486227 jgi|Araly1|486227|fgenesh2_kg.5__2219__AT3G57760.1
Length=1293
Score = 2001 bits (1083), Expect = 0.0
Identities = 1230/1301 (95%), Gaps = 9/1301 (1%)
Strand=Plus/Plus
Query 8 ATGGTGTTTTCGCTTCTGAGTACCAATGATTTGAAATATTCTCTCTTTATTTCAGCTGTT 67
|||||| |||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 1 ATGGTGCTTTCGCTTCTGAGTACCAATGATTTG--AT-TT-TCTCTTTATTTCAGCTGTT 56
Query 68 GAGAGTGGATTAATGGAGTTCCTCTGAGGAGTTTACACACATTAAATCTGGTGCTCTTAA 127
|||||||||||||||||||| ||||||||||||||||||||| |||| | ||||||||||
Sbjct 57 GAGAGTGGATTAATGGAGTTTCTCTGAGGAGTTTACACACATGAAATTTTGTGCTCTTAA 116
Query 128 GGATAAATCTTGTAGAGAGTCTTTACGATGGATTGGTTGAGAACAAAAAGAATCAGAGCC 187
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 117 GGATAAACCTTGTAGAGAGTCTTTACGATGGATTGGCTGAGAACAAAAAGAATCGGAGCC 176
Query 188 AAGAAAAGGAAGAGGAATGTCAAAGAGAATGGCGAGGTTGTTCTAAAAGAGCTCATTGAA 247
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AAGACAAGGAAGAGGAATGTCAAAGAGAATGGCGAGGTTGTTCTAAAAGAGCTCATTGAA 236
Query 248 TGTTGTGATGGAAAATGCAATCCTATCAAGAACTTCTCTTACGACCAGATCATCAAAGCA 307
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 237 TGTTGTGATGGAAAATGCAATCCTATCAAGAACTTCTCTTACGATCAGATCATCAAAGCA 296
Query 308 ACAAATAACTTCTGCCAAAGTAACCGTGCTTCTCGGATTGATGTTTATTACCGTTGCTAT 367
||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 297 ACAGATAACTTCTCCCAAAGTAACCGTGCTTCCCGGATTGATGTTTATTACCGTTGCTAT 356
Query 368 AAAGGCATGCTTGATGACCGGCCAGTGCTCATCAAGAAAGGGAAATACACACTTGATATG 427
||||||||||| |||||||| ||||| || ||||||||||| ||||||||||||||||||
Sbjct 357 AAAGGCATGCTCGATGACCGCCCAGTACTTATCAAGAAAGGAAAATACACACTTGATATG 416
Query 428 AAAGAGATTTGTCGCGACATAGCTATCTCATCGATGGTTAGTGGTCATAAGAACTTCCTC 487
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 AAAGAGATTTGTCGCGACATAGCGATCTCATCGATGGTTAGTGGTCATAAGAACTTCCTC 476
Query 488 AAACTATTGGGATGTTGTCTTGAGTTCACTCCTCCTGTCTTAGTTTTTGAGTATGCAGAG 547
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 AAGCTATTGGGATGTTGTCTTGAGTTCACTCCCCCTGTCTTAGTTTTTGAGTATGCAGAG 536
Query 548 GTTATAACTCTTGGTCCATTGCTTACATCTCATCCGGGATATCTGAGGAGGATAAAGATA 607
|||||||||||||||| ||||| |||||||||| || ||||||||||||| ||||||
Sbjct 537 ATTATAACTCTTGGTCCGCTGCTTGTATCTCATCCGAGAAATCTGAGGAGGATCAAGATA 596
Query 608 GCAAGAGAGGTCGCAAA-TGCTTTGACTTACCTTCACACAGCATTCTCAAGAGTTTTCAT 666
||||||||||||||||| | |||||||||| ||||| || ||||| ||||||||||||||
Sbjct 597 GCAAGAGAGGTCGCAAACT-CTTTGACTTATCTTCATACCGCATTTTCAAGAGTTTTCAT 655
Query 667 CCATTCGAATCTAGATCCTTTCACCATTTTCTTAGATGGAAATGGGGTCGCAAAGCTCGG 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CCATTCGAATCTAGATCCTTTCACCATTTTCTTAGATGGAAATGGGGTCGCAAAGCTCGG 715
Query 727 GAATTTCTGCAACTGTATCACAATTCCAGAAGGAGAGACATTTGTTCATGATGATACATT 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GAATTTCTGCAACTGTATCACAATTCCAGAAGGAGAGACATTTGTTCATGATGATACATT 775
Query 787 ACAGAAATACCATGAGTTGAGGCATAATACATTAAAGGGGACACATGGGCTTGGTGTATG 846
|||||||||||||||||| ||||| | |||||||||||| || ||||| |||||||||||
Sbjct 776 ACAGAAATACCATGAGTTTAGGCACATTACATTAAAGGGAACCCATGGACTTGGTGTATG 835
Query 847 TAACTTACCGGTCATTGATCCCGACTACAAATCAACCGGTAAAGTCACGACAAAGACTGA 906
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 836 TAACTTACCGGTCATTGATCCCGACTGCAAATCAACCGGTAATGTCACGACAAAGACTGA 895
Query 907 TATGCACAGCTTTGGAGGATTCATGCTAGCTCTTGTGCAGATAAGGGAAGTTGATGATGA 966
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 896 TATGCACAGCTTTGGAGCATTCATGCTAGCTCTTGTCCAGATAAGGGAAGTTGATGATGA 955
Query 967 GCTATCTCTATCTTCGGATATGCTGAGAGCATTAGCTGACTTGTTCATCAAACCTTATGA 1026
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 956 GCTATCTCTATCTTCGGATATGCTGAGAGCATTATCTGATTTGTTCATCAAACCTTATGA 1015
Query 1027 TGATGTTCGCTATGTTCACTTCCCGCTTCACCATCATGTTTCTAAGATACTGAGGAAGTT 1086
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1016 TGATGTTCGCTATGTTCGCTTCCCGCTTCACCATCGTGTCTCTAAGATACTGAGGAAGTT 1075
Query 1087 TGGGTATGCAGAGGTTGTAGATTCAGATATGAGCGAGGTAGCTGCTTGGCCAATTAAAGC 1146
||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||
Sbjct 1076 TGGGTATGCAGAGGTTGTAGATTCAGATATGAGTGAGGTAGCTGTTTGGCCAGTTAAAGC 1135
Query 1147 CTTTCTTAGATTAGCGTTGAGATGCATTGGATGCAAGTTGGGAGACCCGTTGAGTAGCAT 1206
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1136 CTTTCTTAGATTAGCGTTGAGATGCATTGGATGCAACTTGGGAGACCCGTTGAATAGCAT 1195
Query 1207 GATTCAAGTGACGAAAGAGCTCAGGCTGATTGAGAAATCTGCATATTATCCATCAAACAA 1266
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1196 GATTCAAGTGGCGAACGAGCTCAGGCTGATTGAGAAATGTGCATATTATCCATCAAACTG 1255
Query 1267 CAGATCACAGATGAGCTCCATATGACAGGATTCTTTTTGTA 1307
||| || | |||||| |||||||||| |||| ||||||||
Sbjct 1256 CAGG-CA-A-ATGAGCACCATATGACAAGATTTTTTTTGTA 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5