BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G57760.1 Length=1416 Score E Sequences producing significant alignments: (Bits) Value Ahg486227 jgi|Araly1|486227|fgenesh2_kg.5__2219__AT3G57760.1 2001 0.0 > Ahg486227 jgi|Araly1|486227|fgenesh2_kg.5__2219__AT3G57760.1 Length=1293 Score = 2001 bits (1083), Expect = 0.0 Identities = 1230/1301 (95%), Gaps = 9/1301 (1%) Strand=Plus/Plus Query 8 ATGGTGTTTTCGCTTCTGAGTACCAATGATTTGAAATATTCTCTCTTTATTTCAGCTGTT 67 |||||| |||||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct 1 ATGGTGCTTTCGCTTCTGAGTACCAATGATTTG--AT-TT-TCTCTTTATTTCAGCTGTT 56 Query 68 GAGAGTGGATTAATGGAGTTCCTCTGAGGAGTTTACACACATTAAATCTGGTGCTCTTAA 127 |||||||||||||||||||| ||||||||||||||||||||| |||| | |||||||||| Sbjct 57 GAGAGTGGATTAATGGAGTTTCTCTGAGGAGTTTACACACATGAAATTTTGTGCTCTTAA 116 Query 128 GGATAAATCTTGTAGAGAGTCTTTACGATGGATTGGTTGAGAACAAAAAGAATCAGAGCC 187 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 117 GGATAAACCTTGTAGAGAGTCTTTACGATGGATTGGCTGAGAACAAAAAGAATCGGAGCC 176 Query 188 AAGAAAAGGAAGAGGAATGTCAAAGAGAATGGCGAGGTTGTTCTAAAAGAGCTCATTGAA 247 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 AAGACAAGGAAGAGGAATGTCAAAGAGAATGGCGAGGTTGTTCTAAAAGAGCTCATTGAA 236 Query 248 TGTTGTGATGGAAAATGCAATCCTATCAAGAACTTCTCTTACGACCAGATCATCAAAGCA 307 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 237 TGTTGTGATGGAAAATGCAATCCTATCAAGAACTTCTCTTACGATCAGATCATCAAAGCA 296 Query 308 ACAAATAACTTCTGCCAAAGTAACCGTGCTTCTCGGATTGATGTTTATTACCGTTGCTAT 367 ||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 297 ACAGATAACTTCTCCCAAAGTAACCGTGCTTCCCGGATTGATGTTTATTACCGTTGCTAT 356 Query 368 AAAGGCATGCTTGATGACCGGCCAGTGCTCATCAAGAAAGGGAAATACACACTTGATATG 427 ||||||||||| |||||||| ||||| || ||||||||||| |||||||||||||||||| Sbjct 357 AAAGGCATGCTCGATGACCGCCCAGTACTTATCAAGAAAGGAAAATACACACTTGATATG 416 Query 428 AAAGAGATTTGTCGCGACATAGCTATCTCATCGATGGTTAGTGGTCATAAGAACTTCCTC 487 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 417 AAAGAGATTTGTCGCGACATAGCGATCTCATCGATGGTTAGTGGTCATAAGAACTTCCTC 476 Query 488 AAACTATTGGGATGTTGTCTTGAGTTCACTCCTCCTGTCTTAGTTTTTGAGTATGCAGAG 547 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 477 AAGCTATTGGGATGTTGTCTTGAGTTCACTCCCCCTGTCTTAGTTTTTGAGTATGCAGAG 536 Query 548 GTTATAACTCTTGGTCCATTGCTTACATCTCATCCGGGATATCTGAGGAGGATAAAGATA 607 |||||||||||||||| ||||| |||||||||| || ||||||||||||| |||||| Sbjct 537 ATTATAACTCTTGGTCCGCTGCTTGTATCTCATCCGAGAAATCTGAGGAGGATCAAGATA 596 Query 608 GCAAGAGAGGTCGCAAA-TGCTTTGACTTACCTTCACACAGCATTCTCAAGAGTTTTCAT 666 ||||||||||||||||| | |||||||||| ||||| || ||||| |||||||||||||| Sbjct 597 GCAAGAGAGGTCGCAAACT-CTTTGACTTATCTTCATACCGCATTTTCAAGAGTTTTCAT 655 Query 667 CCATTCGAATCTAGATCCTTTCACCATTTTCTTAGATGGAAATGGGGTCGCAAAGCTCGG 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 CCATTCGAATCTAGATCCTTTCACCATTTTCTTAGATGGAAATGGGGTCGCAAAGCTCGG 715 Query 727 GAATTTCTGCAACTGTATCACAATTCCAGAAGGAGAGACATTTGTTCATGATGATACATT 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 716 GAATTTCTGCAACTGTATCACAATTCCAGAAGGAGAGACATTTGTTCATGATGATACATT 775 Query 787 ACAGAAATACCATGAGTTGAGGCATAATACATTAAAGGGGACACATGGGCTTGGTGTATG 846 |||||||||||||||||| ||||| | |||||||||||| || ||||| ||||||||||| Sbjct 776 ACAGAAATACCATGAGTTTAGGCACATTACATTAAAGGGAACCCATGGACTTGGTGTATG 835 Query 847 TAACTTACCGGTCATTGATCCCGACTACAAATCAACCGGTAAAGTCACGACAAAGACTGA 906 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 836 TAACTTACCGGTCATTGATCCCGACTGCAAATCAACCGGTAATGTCACGACAAAGACTGA 895 Query 907 TATGCACAGCTTTGGAGGATTCATGCTAGCTCTTGTGCAGATAAGGGAAGTTGATGATGA 966 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 896 TATGCACAGCTTTGGAGCATTCATGCTAGCTCTTGTCCAGATAAGGGAAGTTGATGATGA 955 Query 967 GCTATCTCTATCTTCGGATATGCTGAGAGCATTAGCTGACTTGTTCATCAAACCTTATGA 1026 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 956 GCTATCTCTATCTTCGGATATGCTGAGAGCATTATCTGATTTGTTCATCAAACCTTATGA 1015 Query 1027 TGATGTTCGCTATGTTCACTTCCCGCTTCACCATCATGTTTCTAAGATACTGAGGAAGTT 1086 ||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| Sbjct 1016 TGATGTTCGCTATGTTCGCTTCCCGCTTCACCATCGTGTCTCTAAGATACTGAGGAAGTT 1075 Query 1087 TGGGTATGCAGAGGTTGTAGATTCAGATATGAGCGAGGTAGCTGCTTGGCCAATTAAAGC 1146 ||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| Sbjct 1076 TGGGTATGCAGAGGTTGTAGATTCAGATATGAGTGAGGTAGCTGTTTGGCCAGTTAAAGC 1135 Query 1147 CTTTCTTAGATTAGCGTTGAGATGCATTGGATGCAAGTTGGGAGACCCGTTGAGTAGCAT 1206 |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 1136 CTTTCTTAGATTAGCGTTGAGATGCATTGGATGCAACTTGGGAGACCCGTTGAATAGCAT 1195 Query 1207 GATTCAAGTGACGAAAGAGCTCAGGCTGATTGAGAAATCTGCATATTATCCATCAAACAA 1266 |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 1196 GATTCAAGTGGCGAACGAGCTCAGGCTGATTGAGAAATGTGCATATTATCCATCAAACTG 1255 Query 1267 CAGATCACAGATGAGCTCCATATGACAGGATTCTTTTTGTA 1307 ||| || | |||||| |||||||||| |||| |||||||| Sbjct 1256 CAGG-CA-A-ATGAGCACCATATGACAAGATTTTTTTTGTA 1293 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52945440550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5