BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57765.1
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg938754 jgi|Araly1|938754|scaffold_502945.1 409 2e-113
Ahg939397 jgi|Araly1|939397|scaffold_503588.1 183 1e-45
Ahg950479 jgi|Araly1|950479|scaffold_802366.1 174 8e-43
Ahg312655 jgi|Araly1|312655|fgenesh1_pm.C_scaffold_1001435 158 8e-38
Ahg898727 jgi|Araly1|898727|Al_scaffold_0005_2693 135 4e-31
Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220 130 2e-29
> Ahg938754 jgi|Araly1|938754|scaffold_502945.1
Length=1070
Score = 409 bits (221), Expect = 2e-113
Identities = 372/442 (84%), Gaps = 21/442 (5%)
Strand=Plus/Minus
Query 1 GAATTCAGTATGCAGATACGTTACAGCATCTGCAATCTCCTTAGCGA-TCTTCAATCTTA 59
|||||||||||||||||||||||||||||||||||||||||| |||| || |||| ||||
Sbjct 543 GAATTCAGTATGCAGATACGTTACAGCATCTGCAATCTCCTTGGCGATTC-TCAACCTTA 485
Query 60 CACTCCAAGCCAATGGCTTGATTACC-TC-CCCCGCACCTCCTATATAGGCAAGAGCTCC 117
|| |||||| |||||| || || || | ||| || |||| || ||||||||
Sbjct 484 CATTCCAAGGGAATGGCCGGA-CGCCTTCTTTTC-CACGTCTTATACAGTTTAGAGCTCC 427
Query 118 CTTTTCTGGGTATTCACACACGAGAACCGGACGAGGAAACTCTAGACAACACCCCAAG-A 176
||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| || |
Sbjct 426 ATTTTCTGGGTACTCACACACGAGAACAGGACGAGGAAACTCTAGACAACA-CCCTAGAA 368
Query 177 GCTTGAGAACATTCTTATGGCTGCTCATCATCGATGAAACCGCAATATCACGGTAAAAGT 236
|||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 367 GCTTGAGAACATTCTTATGGCTACTCATCAAAGATGAAACCGCAATGTCACGGTAAAAGT 308
Query 237 TGTCAGGGTCAAAGTTAAAGGGTTCA-CCTT-TATAGTACTTGATCAGCACG-GCTCTGT 293
|||||| ||| | ||| | || ||| | | | ||||||||| ||| | |||||
Sbjct 307 TGTCAGCGTC---G-AAAACAGAACAGTCTTGGA-ATTTCTTGATCAGTACGAG-TCTGT 254
Query 294 TTTCAATCGTACCTTTGTACCACACGAATCTGTCTACACCGATTGCATAGCTCCAGTCGA 353
|||||||| |||||||||||||||||||||||||| || |||| | ||| ||||||| |
Sbjct 253 TTTCAATCATACCTTTGTACCACACGAATCTGTCTTCAGAGATTACGTAGTTCCAGTCAA 194
Query 354 AGTTG-TTTGTAGCTTCAAGGATTTGGT-GAGAAGAAAACGTACGGATGGGATTGTATTT 411
|| || ||||| |||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 193 AG-TGATTTGTGGCTTGAAGGATTTGGTCG-GAAGAAAACGTACGGATGGGATTGTATTT 136
Query 412 ACCTCCTGACGATGCAATGAGT 433
||||||||| | ||||||||||
Sbjct 135 ACCTCCTGAAGTTGCAATGAGT 114
> Ahg939397 jgi|Araly1|939397|scaffold_503588.1
Length=376
Score = 183 bits (99), Expect = 1e-45
Identities = 125/137 (91%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 480 AGTATAAATAAGAAGCTC-CGCCC-ATCGTCCAAATCATACCTTTCTCGGCCTTTTGGCT 537
||||||||| || || || |||| || | || ||||||||||||||||||||||||||
Sbjct 135 AGTATAAATCAG-AGGTCGAGCCCAAT-TTGCATATCATACCTTTCTCGGCCTTTTGGCT 78
Query 538 AAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGGCCATCGGCCC 597
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 77 AAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGGGTCATCGGTCC 18
Query 598 ACACGATATTAACTCTA 614
|||||||||||||||||
Sbjct 17 ACACGATATTAACTCTA 1
> Ahg950479 jgi|Araly1|950479|scaffold_802366.1
Length=211
Score = 174 bits (94), Expect = 8e-43
Identities = 102/106 (96%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 509 CAAATCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGT 568
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 CAATTCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGT 47
Query 569 TTAATATCTGATATGTGGGCCATCGGCCCACACGATATTAACTCTA 614
|||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 46 TTAATATCTGGTATGTGGGTCATTGGCCCACACGATATTAACTCTA 1
> Ahg312655 jgi|Araly1|312655|fgenesh1_pm.C_scaffold_1001435
Length=255
Score = 158 bits (85), Expect = 8e-38
Identities = 85/85 (100%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 507 TCCAAATCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCA 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 TCCAAATCATACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCA 26
Query 567 GTTTAATATCTGATATGTGGGCCAT 591
|||||||||||||||||||||||||
Sbjct 25 GTTTAATATCTGATATGTGGGCCAT 1
> Ahg898727 jgi|Araly1|898727|Al_scaffold_0005_2693
Length=552
Score = 135 bits (73), Expect = 4e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 519 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTG 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTG 14
Query 579 ATATGTGGGCCAT 591
|||||||||||||
Sbjct 13 ATATGTGGGCCAT 1
> Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220
Length=420
Score = 130 bits (70), Expect = 2e-29
Identities = 72/73 (99%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 519 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTG 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 73 CTTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATTTG 14
Query 579 ATATGTGGGCCAT 591
|||||||||||||
Sbjct 13 ATATGTGGGCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32251987782
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5