BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G57780.1
Length=2237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486231 jgi|Araly1|486231|fgenesh2_kg.5__2223__AT3G57780.1 2579 0.0
Ahg939011 jgi|Araly1|939011|scaffold_503202.1 335 9e-91
Ahg898936 jgi|Araly1|898936|Al_scaffold_0005_2902 302 9e-81
> Ahg486231 jgi|Araly1|486231|fgenesh2_kg.5__2223__AT3G57780.1
Length=2070
Score = 2579 bits (1396), Expect = 0.0
Identities = 1687/1824 (92%), Gaps = 34/1824 (2%)
Strand=Plus/Plus
Query 443 TTCAGAGAAAACTGAGAAGGAAGAGACTATAAATGGCTTGGCTTGTGATGATGAAGATGA 502
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| ||
Sbjct 252 TTCAGAGAAAACTGAGAAGGAAGAGAGTGTAAATGGCTTGGCCTGTGATGATGAAGAGGA 311
Query 503 GGAGGAGAAGGAAGAAAGCAAAGAATTAGATGCTATAGCTCACGAGAAGACAGATTCTGT 562
|||||||||||| ||||||||||| || |||||||||||||| || ||||||||||||||
Sbjct 312 GGAGGAGAAGGACGAAAGCAAAGACTTTGATGCTATAGCTCATGAAAAGACAGATTCTGT 371
Query 563 ATCTTCTCCTGAAACTTGCGAAGGTGTCAATGTTGATAAGGTAGTCGAAGTTTGGGATGA 622
||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 372 ATCTTATTCTGAAACTTGCAAAGGTGTCAATGTTGATAAGGCAGTCGAAGTTTGGGATGA 431
Query 623 TGCTTCGAATGGTGGTCTAAGCGGTGGAAGTGAGAACGAGGCAGGTGATGTCAAAGAGAA 682
|||||| |||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||
Sbjct 432 TGCTTCAAATGGTGGCCTAAGCGGTGGAAGTGAAAACGAGGAAGGTGATGTTAAAGAGAA 491
Query 683 AAATGAGAATTTTGAGGAGGATGAAGAAATGTTGAAGCAAATGGTTGA-GACTTTGGAGA 741
|| |||||| |||||||||| |||||| ||||| |||| |||||| || ||||||||
Sbjct 492 AAGTGAGAAACTTGAGGAGGAAGAAGAAGCATTGAAACAAAAGGTTGAGGA-TTTGGAGA 550
Query 742 CAAGAGTTGAGAAACTTGAAGAAGAGCTAAGAGAAGTTGCAGCGCTCGAGATTTCGCTCT 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CAAGAGTTGAGAAACTTGAAGAAGAGCTAAGAGAAGTTGCAGCGCTCGAGATTTCGCTCT 610
Query 802 ATTCGGTTGTACCAGACCACTCTAGCTCAGCTCACAAGCTTCACACACCTGCTCGAAGAA 861
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 611 ATTCGGTTGTACCAGACCACTCTAGCTCAGAGCACAAGCTTCACACACCTGCTCGGAGAA 670
Query 862 TTTCAAGAATCTATATTCATGCTTGTAAACATTGGAGTCAAGGAAAACGAGCAACTGTCG 921
|||||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 671 TTTCAAGACTCTATATCCATGCTTGTAAACATTGGAGTCAAGGAAAGCAAGCAACTGTCG 730
Query 922 CTAGAAACTCTGTGTCTGGTCTCATTTTAGCTGCTAAATCTTGCGGAAATGATGTTTCAA 981
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 731 CTAGAAACTCCGTGTCTGGTCTCATTTTAGCTGCTAAATCTTGCGGAAATGATGTTTCCA 790
Query 982 GGTTGACCTTCTGGTTATCGAACATCATTTCTCTCAGAGAGATCATTTTGCAGGCTTTTG 1041
||||||||||||||||||||||||||||| || | |||||||||||||||||||| ||||
Sbjct 791 GGTTGACCTTCTGGTTATCGAACATCATTGCTTTGAGAGAGATCATTTTGCAGGCATTTG 850
Query 1042 GTAAAACTAGTGTTCCTAGTCATTTCACAGAGACCTCTGCATCAAATGGGAGTGAACATA 1101
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |
Sbjct 851 GTAAAACTAGTGTTCCTAGACATTTCACAGAGACCTCTGAATCAAATGGGAGTGAAAACA 910
Query 1102 ATGTTTTAGGGAAGGTAAGAAGGAAGAAGAACCAATGGACTAAGCAGTCAAATGGTTTTA 1161
||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 911 ATGGTTTAGGGAAGCTAAAAAGGAAGAAGAACCAATGGACTAAGCAGTCAAATGGTTTCA 970
Query 1162 AGCAGGTTTTCGAAGATTGGCAGGAATCACAAACCTTCACTGCTGCATTAGAGAAAGTCG 1221
|||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||||||
Sbjct 971 AGCAGGTTTTAGAAGATTGGCAGGAACCAGAAACCTTCACTGCCGCATTAGAGAAAGTCG 1030
Query 1222 AATTCTGGATTTTCTCTAGAATTGTTGAATCTGTTTGGTGGCAGGTTTTCACTCCTCACA 1281
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1031 AATTCTGGATTTTCTCTAGAATCGTTGAATCTGTTTGGTGGCAGGTTTTCACTCCTCACA 1090
Query 1282 TGCAATCACCGGAAAATGGCGGTAAAACAAAGGAG---C-A-T---A--T--CTTGGGAG 1329
||||||| ||||||||||||||||| || || ||| | | | | | ||||||||
Sbjct 1091 TGCAATCCCCGGAAAATGGCGGTAATACGAATGAGAAACTAATGGGACCTGTCTTGGGAG 1150
Query 1330 ATATTGAGCAAGGAAGCTTTTCAATCAGCCTATGGAAAAACGCTTTCAAAGTTACACTAT 1389
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1151 ATAATGAGCAAGGAAGCTTTTCAATCAGCCTATGGAAAAACGCTTTCAAAGTTGCTCTAT 1210
Query 1390 CGCGGCTCTGTCCTATGCGAGGAGC-GCGGCACGAGTGCGGTTGCTTACCTATCTTGGCT 1448
||||||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||
Sbjct 1211 CGCGGCTCTGTCCTATGCGTGGAGCAG-GGCACGAGTGCGGTTGTTTACCTATCTTGGCT 1269
Query 1449 AAAATGGTAATGGAGAAGTGTATAGCTCGAATTGACGTAGCCATGTTCAACGCAATTCTG 1508
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1270 AAAATGGTAATGGAGAAGTGTATATCTCGAATTGACGTAGCCATGTTCAACGCAATTCTA 1329
Query 1509 CGTGAGTCAGAGCATCAGATTCCCACGGATCCTGTCTCTGATCCTATCCTTGATTCCAAA 1568
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1330 CGTGAGTCAGAGCATCAGATTCCCACGGATCCTGTCTCAGATCCTATCCTAGATTCCAAA 1389
Query 1569 GTTCTGCCTATCCTTTCTGGAAACTTAAGCTTTGGATCCGGTGCACAGCTTAAAAACGCG 1628
||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1390 GTTCTGCCTATACTTGCTGGAAACTTAAGCTTTGGATCCGGGGCACAGCTTAAAAATGCG 1449
Query 1629 ATTGGGAATTGGTCTAGATGCCTTGCAGAAATGTTCTCCATAAACACTAGAGATTCAGTT 1688
||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1450 ATTGGCAATTGGTCAAGATGCCTCGCTGAAATGTTCTCCATAAACACTAGAGATTCAGTA 1509
Query 1689 GAAGAAAATGATCCAATAGAAAGTGAGAAATCTTTCAGTTTGCTAAACGAACTCAGTGAT 1748
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1510 GAAGAAAATGATTCAATAGAAAGTGAGAAATCTTTCAGTTTGCTAAACGAACTCAGCGAT 1569
Query 1749 CTACTTATGCTTCCAAAAGACATGCTTATGGACCGATCCACTAGAGAAGAGGTATGTCCA 1808
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1570 CTACTTATGCTCCCAAAAGACATGCTTATGGACCGATCCACAAGAGAAGAGGTATGCCCA 1629
Query 1809 TCGATAAGTCTTGCGTTGATCAAAAGAATACTCTGCAACTTTACACCTGATGAGTTTTGT 1868
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1630 TCGATAAGTCTTCCGTTGATCAAAAGAATACTCTGTAACTTTACACCTGATGAGTTTTGT 1689
Query 1869 CCTGATGATGTCCCTGGAGCTGTCCTAGAAGAGCTTAATAACGAGAGCATTTCAGAGCAG 1928
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 CCTGATGATGTCCCTGGTGCTGTCCTAGAAGAGCTTAATAACGAGAGCATTTCAGAGCAG 1749
Query 1929 AAGTTATCAGGAGTTAGCTTCCCTTACGCAGCTTCTCCTGTTTCGTACACTCCTCCATCA 1988
||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1750 AAGGTATCAGGAGTTAGCTTCCCTTACGCAGCTTCTCCTGTTTCATACAATCCTCCATCA 1809
Query 1989 TCAAC-CAATGTTGCAGAG---GT---AG-G--AG-ACAT--CTCTAGAATGTCGAGGAA 2035
||| | |||||| |||||| || || | || | || ||||||||||||||||||
Sbjct 1810 TCA-CTCAATGTAGCAGAGAAAGTTCCAGAGGTAGGAGATATCTCTAGAATGTCGAGGAA 1868
Query 2036 TGTGTCTATGATACAAAGAAAAGGATACACAAGCGATGACGAGCTGGAGGAACTGGATTC 2095
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1869 TGTATCTATGATACAAAGAAAAGGATACACAAGCGATGAGGAGCTGGAGGAACTAGATTC 1928
Query 2096 TCCTCTTACATCCATCATTGAAAACGTATCGCTGTCACCAATTTCCGCACAGGGCAGGAA 2155
|||||||||||||||||| ||||| |||||| ||||||||||||||| |||| |||||||
Sbjct 1929 TCCTCTTACATCCATCATCGAAAAAGTATCGTTGTCACCAATTTCCGTACAGAGCAGGAA 1988
Query 2156 TGTGAAGCAGGAAGCTGAGAAAATAGG-GCCAGGGGT-GACAATTTCAAGATATGAGCTT 2213
||||||||||||| ||||| | ||||| || || ||| | ||| | ||||||||||||||
Sbjct 1989 TGTGAAGCAGGAAACTGAGCATATAGGTGC-AGTGGTAG-CAAATGCAAGATATGAGCTT 2046
Query 2214 CTTAGGGAAGTGTGGTCTATGTGA 2237
|||||||||| |||||||||||||
Sbjct 2047 CTTAGGGAAGCGTGGTCTATGTGA 2070
Score = 303 bits (164), Expect = 3e-81
Identities = 204/223 (91%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 225 ATGAAGGGAAGAACAACCAACAACAGTGTACAGTCGAATCGCTCTACGAAGAATGGGAAA 284
||||||||| |||||| | ||||||| | |||| |||||| ||||||||||||||||||
Sbjct 1 ATGAAGGGACGAACAA-C--CAACAGTATGCAGTTGAATCGGTCTACGAAGAATGGGAAA 57
Query 285 AGAGATCAAAAGCCACAGAAGACAAATGGTGCTAAACGATCTTCAGAGCAAGAAAGACTC 344
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 58 AGAGATCAAAAGCCACAGAAGACGAATGGTGCTAAAAGATCTTCAGAGCAAGAAAGACTC 117
Query 345 AAAGCTACTAAGGAGGAATCTAATGTCTCAGTAGTAGTAGATGATACAACTACACAATCA 404
|||||| ||| || |||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 118 AAAGCTTTTAAAGAAGAATCTAACGTCCCAGTAGTAGTAGATGATACAACTACACATTCA 177
Query 405 AAGCTCTCTGATGATGATGATCATGCAGTGAATGACTCTTCAG 447
|||||||||||||||||||||||||||||||| || |||||||
Sbjct 178 AAGCTCTCTGATGATGATGATCATGCAGTGAACGAGTCTTCAG 220
> Ahg939011 jgi|Araly1|939011|scaffold_503202.1
Length=466
Score = 335 bits (181), Expect = 9e-91
Identities = 228/249 (92%), Gaps = 9/249 (4%)
Strand=Plus/Plus
Query 202 GGAAAACTGAAAAGAGTTTGATGATGAAGGGAAGAACAACCAACAACAGTGTACAGTCGA 261
||||||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||
Sbjct 1 GGAAAACTGAAAAGAGTTTTATGATGAAGGGAAGAACAA-C--CAACATTGTACAGTCGA 57
Query 262 ATCGCTCTACGAAGAATGGGAAAAGAGATCAAAAGCCACAGAAGACAA-ATGGTGCTAAA 320
|||| ||| | ||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 58 ATCGGTCTTCCAAGAATGGGAAAAGAGATCAAAAGCCACAGAAGACAACATG-TGCTAAA 116
Query 321 CGATCT-TCAGAGCAAGAAAGACTCAAAGCTACTAAGGAGGAATCTAATGTCTCAGTAGT 379
||||| | |||||||||||||||| ||||| ||| ||||||||||||||||||||| |
Sbjct 117 AGATCTCT-AGAGCAAGAAAGACTCGAAGCTTTTAAAGAGGAATCTAATGTCTCAGTACT 175
Query 380 AGTAGATGATACAACTACACAATCAAAGCTCTCTGATGA-TGATGATCATGCAGTGAATG 438
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 176 AGTAGATGATACAACTACACAATCAAAGCTCTCT-ATGAATGATGATCATGCAGTGAATG 234
Query 439 ACTCTTCAG 447
| |||||||
Sbjct 235 AGTCTTCAG 243
> Ahg898936 jgi|Araly1|898936|Al_scaffold_0005_2902
Length=327
Score = 302 bits (163), Expect = 9e-81
Identities = 203/221 (92%), Gaps = 7/221 (3%)
Strand=Plus/Plus
Query 229 AGGGAAGAACAACCAACAACAGTGTACAGTCGAATCGCTCTACGAAGAATGGGAAAAGAG 288
|||||||||||| | ||||| ||||||||||||||| ||| | ||||||||||||||||
Sbjct 32 AGGGAAGAACAA-C--CAACATTGTACAGTCGAATCGGTCTTCCAAGAATGGGAAAAGAG 88
Query 289 ATCAAAAGCCACAGAAGACAA-ATGGTGCTAAACGATCTTC-AGAGCAAGAAAGACTCAA 346
||||||||||||||||||||| | ||||||||| |||| || |||||||||||||||| |
Sbjct 89 ATCAAAAGCCACAGAAGACAACA-GGTGCTAAAAGATC-TCTAGAGCAAGAAAGACTCGA 146
Query 347 AGCTACTAAGGAGGAATCTAATGTCTCAGTAGTAGTAGATGATACAACTACACAATCAAA 406
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 147 AGCTTTTAAAGAGGAATCTAATGTCTCAGTAGTAGTAGATGATACAACTACACAATTAAA 206
Query 407 GCTCTCTGATGATGATGATCATGCAGTGAATGACTCTTCAG 447
||||||||||||||||||||||||||||||||| |||||||
Sbjct 207 GCTCTCTGATGATGATGATCATGCAGTGAATGAGTCTTCAG 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84217531695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5